Wall clock time and date at job start Tue Mar 31 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46763 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00192 * 3 2 1 5 5 N 1.46500 * 109.47264 * 65.00323 * 3 2 1 6 6 C 1.39679 * 119.99564 * 275.00036 * 5 3 2 7 7 C 1.38999 * 120.04428 * 359.97438 * 6 5 3 8 8 C 1.38147 * 120.06445 * 179.97438 * 7 6 5 9 9 C 1.38172 * 120.14289 * 359.97438 * 8 7 6 10 10 C 1.38919 * 120.07909 * 0.02562 * 9 8 7 11 11 O 1.35744 * 120.03000 * 179.97438 * 10 9 8 12 12 C 1.34837 * 116.99736 * 174.48571 * 11 10 9 13 13 H 1.08000 * 119.99865 * 5.07642 * 12 11 10 14 14 C 1.38651 * 119.99853 * 185.08154 * 12 11 10 15 15 N 1.31558 * 120.00254 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00025 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47090 * 89.99853 * 16 14 12 18 18 H 1.48495 * 109.47302 * 209.99946 * 16 14 12 19 19 H 1.48507 * 109.46962 * 330.00084 * 16 14 12 20 20 C 1.38752 * 120.03643 * 179.72307 * 6 5 3 21 21 C 1.53001 * 109.46929 * 185.00206 * 3 2 1 22 22 H 1.08997 * 115.55313 * 325.66799 * 21 3 2 23 23 C 1.52999 * 117.49740 * 111.37711 * 21 3 2 24 24 C 1.53000 * 117.49630 * 179.97438 * 21 3 2 25 25 C 1.53006 * 117.49990 * 359.97438 * 24 21 3 26 26 C 1.53002 * 117.50006 * 144.99799 * 24 21 3 27 27 H 1.09000 * 109.47395 * 60.00206 * 1 2 3 28 28 H 1.08995 * 109.46875 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47271 * 299.99624 * 1 2 3 30 30 H 1.09000 * 109.47395 * 119.99794 * 2 1 3 31 31 H 1.09000 * 109.47271 * 240.00375 * 2 1 3 32 32 H 0.96994 * 120.00408 * 94.99842 * 5 3 2 33 33 H 1.08006 * 119.96699 * 359.97438 * 7 6 5 34 34 H 1.07997 * 119.93074 * 179.97438 * 8 7 6 35 35 H 1.07997 * 119.96301 * 180.02562 * 9 8 7 36 36 H 0.97001 * 120.00017 * 180.02562 * 15 14 12 37 37 H 1.08006 * 120.07298 * 359.97438 * 20 6 5 38 38 H 1.08995 * 117.50093 * 214.97203 * 23 21 3 39 39 H 1.08996 * 117.50106 * 0.02562 * 23 21 3 40 40 H 1.08997 * 109.46866 * 60.00165 * 25 24 21 41 41 H 1.09001 * 109.47043 * 179.97438 * 25 24 21 42 42 H 1.08999 * 109.47255 * 299.99965 * 25 24 21 43 43 H 1.08999 * 109.47048 * 59.99548 * 26 24 21 44 44 H 1.08998 * 109.47067 * 179.97438 * 26 24 21 45 45 H 1.09003 * 109.46990 * 299.99792 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.3908 2.6850 1.3711 7 6 -0.4975 2.6491 0.3026 8 6 -1.7456 3.2295 0.4203 9 6 -2.1152 3.8467 1.5999 10 6 -1.2322 3.8861 2.6716 11 8 -1.5962 4.4932 3.8299 12 6 -0.7398 4.3970 4.8668 13 1 0.2227 3.9264 4.7304 14 6 -1.0948 4.9021 6.1083 15 7 -2.2670 5.4756 6.2744 16 14 0.0914 4.7681 7.5451 17 1 0.9625 5.9703 7.5815 18 1 -0.6756 4.6741 8.8132 19 1 0.9304 3.5536 7.3828 20 6 0.0207 3.3005 2.5583 21 6 3.5648 1.4445 -0.1258 22 1 4.0780 0.6172 0.3645 23 6 4.1655 1.9765 -1.4284 24 6 4.2703 2.8019 -0.1450 25 6 3.3969 4.0537 -0.0376 26 6 5.6423 2.8947 0.5259 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.2718 2.1233 1.9978 33 1 -0.2116 2.1670 -0.6206 34 1 -2.4338 3.2007 -0.4114 35 1 -3.0918 4.2992 1.6889 36 1 -2.5152 5.8293 7.1429 37 1 0.7073 3.3259 3.3917 38 1 5.0741 1.4993 -1.7955 39 1 3.4744 2.3256 -2.1957 40 1 2.8426 4.0304 0.9006 41 1 4.0292 4.9412 -0.0638 42 1 2.6969 4.0811 -0.8727 43 1 6.3319 2.2047 0.0396 44 1 6.0228 3.9121 0.4356 45 1 5.5497 2.6331 1.5800 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397734234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:39 Heat of formation + Delta-G solvation = 2.615491 kcal Electronic energy + Delta-G solvation = -23511.146201 eV Core-core repulsion = 20301.248229 eV Total energy + Delta-G solvation = -3209.897971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08419 -40.08549 -38.45076 -36.22520 -34.21797 -33.53983 -30.72314 -30.44954 -29.67417 -28.33477 -27.36103 -26.42049 -23.56321 -23.14641 -22.32794 -21.21560 -19.89183 -19.40826 -18.93616 -17.19159 -16.89692 -16.62739 -16.04021 -15.88218 -15.58438 -15.42652 -15.10243 -14.90982 -14.51274 -14.41562 -14.23097 -13.78310 -13.58697 -13.46962 -13.19561 -13.14784 -12.88273 -12.68781 -12.59729 -12.50007 -12.32937 -12.13048 -12.11328 -12.02722 -11.73518 -11.39678 -11.23749 -11.04673 -10.84119 -10.59957 -10.21765 -9.03168 -8.43540 -8.08121 -6.11216 0.82433 0.98726 1.33672 1.44341 1.51278 2.19114 2.40038 2.92161 3.04487 3.31851 3.55117 3.64134 3.83875 4.01064 4.15403 4.20832 4.25244 4.28330 4.37412 4.49698 4.54594 4.68244 4.73830 4.79617 4.80513 4.84661 4.95780 4.98114 5.06804 5.09294 5.11583 5.15353 5.17966 5.18869 5.19854 5.27394 5.34680 5.40147 5.49651 5.55195 5.57598 5.80157 5.86686 6.08656 6.17474 6.69945 6.94593 7.02403 7.87214 8.80360 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015061 B = 0.004658 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.708999 B = 6009.208870 C = 7046.407219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.128 4.128 3 C 0.188 3.812 4 H 0.076 0.924 5 N -0.730 5.730 6 C 0.269 3.731 7 C -0.258 4.258 8 C -0.032 4.032 9 C -0.265 4.265 10 C 0.151 3.849 11 O -0.235 6.235 12 C -0.407 4.407 13 H 0.098 0.902 14 C -0.025 4.025 15 N -0.923 5.923 16 Si 1.017 2.983 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.255 1.255 20 C -0.317 4.317 21 C -0.158 4.158 22 H 0.114 0.886 23 C -0.149 4.149 24 C -0.125 4.125 25 C -0.114 4.114 26 C -0.114 4.114 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.396 0.604 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.101 0.899 36 H 0.271 0.729 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.050 -10.336 -15.671 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.167 4.167 3 C 0.084 3.916 4 H 0.094 0.906 5 N -0.358 5.358 6 C 0.164 3.836 7 C -0.280 4.280 8 C -0.051 4.051 9 C -0.286 4.286 10 C 0.100 3.900 11 O -0.142 6.142 12 C -0.483 4.483 13 H 0.115 0.885 14 C -0.222 4.222 15 N -0.562 5.562 16 Si 0.836 3.164 17 H -0.188 1.188 18 H -0.196 1.196 19 H -0.179 1.179 20 C -0.341 4.341 21 C -0.177 4.177 22 H 0.132 0.868 23 C -0.186 4.186 24 C -0.125 4.125 25 C -0.172 4.172 26 C -0.171 4.171 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.230 0.770 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.767 -10.207 -15.649 23.815 hybrid contribution 0.132 0.338 1.445 1.489 sum 14.899 -9.869 -14.205 22.829 Atomic orbital electron populations 1.22127 0.96183 1.01193 1.01950 1.21975 0.95867 0.96248 1.02586 1.20509 0.92041 0.92678 0.86422 0.90616 1.44750 1.13132 1.61520 1.16364 1.17410 0.85824 0.88580 0.91753 1.20763 0.95301 1.12347 0.99599 1.20775 0.96114 0.93024 0.95146 1.20198 1.00178 1.13573 0.94659 1.19618 0.93248 0.90061 0.87025 1.83944 1.46253 1.65856 1.18143 1.21755 0.98551 1.40461 0.87574 0.88494 1.26551 0.99149 0.95799 1.00657 1.70194 1.22285 1.38384 1.25348 0.84618 0.76753 0.79584 0.75426 1.18818 1.19559 1.17863 1.20470 0.98713 1.15056 0.99839 1.22654 0.93488 0.97989 1.03569 0.86797 1.23331 1.03025 1.02102 0.90169 1.21513 0.97263 0.91833 1.01927 1.21360 0.98407 0.95723 1.01680 1.21355 0.93404 1.02334 0.99969 0.91683 0.92978 0.93808 0.92401 0.89495 0.77011 0.83634 0.83546 0.88106 0.91989 0.87321 0.87061 0.88512 0.93186 0.92625 0.93145 0.91234 0.92177 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.22 71.98 0.59 -2.88 16 2 C -0.13 -2.38 5.59 30.60 0.17 -2.21 16 3 C 0.19 3.75 1.75 44.99 0.08 3.83 16 4 H 0.08 1.57 6.11 -2.38 -0.01 1.55 16 5 N -0.73 -19.43 3.22 -318.99 -1.03 -20.46 16 6 C 0.27 9.37 5.43 38.20 0.21 9.58 16 7 C -0.26 -8.18 6.72 22.43 0.15 -8.03 16 8 C -0.03 -1.12 10.03 22.23 0.22 -0.89 16 9 C -0.27 -11.98 9.99 22.42 0.22 -11.76 16 10 C 0.15 7.91 6.65 22.56 0.15 8.06 16 11 O -0.24 -14.78 9.76 -22.74 -0.22 -15.00 16 12 C -0.41 -24.55 9.49 67.92 0.64 -23.90 16 13 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 14 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 15 N -0.92 -58.30 13.67 21.61 0.30 -58.00 16 16 Si 1.02 44.19 29.55 68.60 2.03 46.21 16 17 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 20 C -0.32 -14.29 9.01 22.52 0.20 -14.09 16 21 C -0.16 -2.59 4.95 -10.79 -0.05 -2.64 16 22 H 0.11 1.70 8.11 -2.39 -0.02 1.69 16 23 C -0.15 -2.08 9.46 30.58 0.29 -1.79 16 24 C -0.13 -2.19 2.67 -52.19 -0.14 -2.33 16 25 C -0.11 -2.56 8.69 71.98 0.63 -1.94 16 26 C -0.11 -1.76 9.85 71.98 0.71 -1.05 16 27 H 0.06 1.30 6.35 -2.39 -0.02 1.28 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 1.26 5.39 -2.39 -0.01 1.25 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.40 10.55 8.55 -92.71 -0.79 9.76 16 33 H 0.15 3.68 4.00 -2.91 -0.01 3.67 16 34 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 35 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 36 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 37 H 0.11 5.09 5.63 -2.91 -0.02 5.07 16 38 H 0.11 1.20 8.05 -2.39 -0.02 1.18 16 39 H 0.10 1.34 7.95 -2.39 -0.02 1.32 16 40 H 0.05 1.36 6.52 -2.39 -0.02 1.35 16 41 H 0.05 1.18 7.92 -2.39 -0.02 1.16 16 42 H 0.05 1.14 7.77 -2.39 -0.02 1.12 16 43 H 0.07 0.86 7.90 -2.39 -0.02 0.84 16 44 H 0.06 0.93 7.92 -2.39 -0.02 0.91 16 45 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -71.21 351.89 5.81 -65.39 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.20 Total: 34.88 kcal Atomic # 6 Polarization: -57.56 SS G_CDS: 4.54 Total: -53.02 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -0.73 Total: -78.47 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.22 Total: -15.00 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -71.21 5.81 -65.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397734234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.009 kcal (2) G-P(sol) polarization free energy of solvation -71.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds