Wall clock time and date at job start Tue Mar 31 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47374 * 2 1 4 4 C 1.53000 * 109.47112 * 119.99723 * 2 1 3 5 5 N 1.46908 * 109.47289 * 305.75212 * 4 2 1 6 6 C 1.46843 * 110.99828 * 282.63546 * 5 4 2 7 7 C 1.53033 * 109.52525 * 174.16164 * 6 5 4 8 8 C 1.53117 * 109.27787 * 59.17369 * 7 6 5 9 9 C 1.53120 * 109.16486 * 302.34569 * 8 7 6 10 10 H 1.09000 * 109.50292 * 297.68228 * 9 8 7 11 11 C 1.50696 * 109.50514 * 177.59234 * 9 8 7 12 12 H 1.08001 * 120.00527 * 335.23839 * 11 9 8 13 13 C 1.37878 * 119.99602 * 155.23563 * 11 9 8 14 14 N 1.31511 * 120.00352 * 355.32042 * 13 11 9 15 15 Si 1.86805 * 119.99546 * 175.32218 * 13 11 9 16 16 H 1.48496 * 109.47633 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46899 * 239.99863 * 15 13 11 18 18 H 1.48497 * 109.46862 * 120.00378 * 15 13 11 19 19 C 1.46845 * 110.99782 * 158.42254 * 5 4 2 20 20 C 1.50699 * 109.47501 * 239.99982 * 2 1 3 21 21 C 1.38235 * 119.99788 * 269.73403 * 20 2 1 22 22 C 1.38230 * 120.00021 * 179.81037 * 21 20 2 23 23 C 1.38239 * 119.99811 * 0.39164 * 22 21 20 24 24 C 1.38233 * 120.00154 * 359.85663 * 23 22 21 25 25 C 1.38225 * 120.00037 * 89.99808 * 20 2 1 26 26 H 1.08998 * 109.47652 * 300.00359 * 1 2 3 27 27 H 1.09008 * 109.46751 * 59.99966 * 1 2 3 28 28 H 1.08995 * 109.47594 * 179.97438 * 1 2 3 29 29 H 0.96696 * 114.00013 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47310 * 185.74993 * 4 2 1 31 31 H 1.09009 * 109.46870 * 65.74917 * 4 2 1 32 32 H 1.09002 * 109.46359 * 54.13728 * 6 5 4 33 33 H 1.09008 * 109.45206 * 294.17188 * 6 5 4 34 34 H 1.09002 * 109.50103 * 299.23492 * 7 6 5 35 35 H 1.09001 * 109.50697 * 179.11805 * 7 6 5 36 36 H 1.09004 * 109.52035 * 182.44490 * 8 7 6 37 37 H 1.08996 * 109.57306 * 62.28761 * 8 7 6 38 38 H 0.96998 * 119.99979 * 5.34220 * 14 13 11 39 39 H 1.09000 * 109.46402 * 65.82688 * 19 5 4 40 40 H 1.09000 * 109.46409 * 305.85328 * 19 5 4 41 41 H 1.08001 * 120.00239 * 359.97438 * 21 20 2 42 42 H 1.08004 * 120.00599 * 180.22920 * 22 21 20 43 43 H 1.08002 * 119.99814 * 179.84020 * 23 22 21 44 44 H 1.08002 * 120.00020 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.00237 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.4402 -0.1134 2.4447 6 6 2.0996 1.1559 2.7769 7 6 1.3587 1.8297 3.9340 8 6 1.3635 0.8973 5.1486 9 6 0.7147 -0.4347 4.7623 10 1 -0.3241 -0.2649 4.4789 11 6 0.7684 -1.3794 5.9351 12 1 1.5273 -1.2561 6.6936 13 6 -0.1513 -2.4012 6.0399 14 7 -1.1306 -2.4966 5.1673 15 14 -0.0063 -3.6502 7.4214 16 1 1.1736 -3.3240 8.2620 17 1 0.1577 -5.0090 6.8451 18 1 -1.2347 -3.6111 8.2549 19 6 1.4744 -1.0429 3.5811 20 6 2.0324 -0.7104 -1.2304 21 6 2.2680 -2.0720 -1.1945 22 6 2.7251 -2.7244 -2.3242 23 6 2.9543 -2.0137 -3.4876 24 6 2.7236 -0.6511 -3.5220 25 6 2.2627 0.0005 -2.3933 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 2.9703 1.4236 0.0004 30 1 3.1250 -0.6329 1.3023 31 1 1.7630 -1.7743 1.1993 32 1 2.0857 1.8112 1.9059 33 1 3.1318 0.9630 3.0697 34 1 0.3303 2.0352 3.6371 35 1 1.8577 2.7642 4.1906 36 1 0.7995 1.3550 5.9613 37 1 2.3900 0.7227 5.4708 38 1 -1.1623 -1.8961 4.4063 39 1 2.5094 -1.2253 3.8701 40 1 1.0062 -1.9845 3.2943 41 1 2.0925 -2.6267 -0.2846 42 1 2.9058 -3.7889 -2.2974 43 1 3.3139 -2.5229 -4.3695 44 1 2.9030 -0.0958 -4.4308 45 1 2.0823 1.0650 -2.4202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397853502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:57 Heat of formation + Delta-G solvation = -33.777998 kcal Electronic energy + Delta-G solvation = -23831.122725 eV Core-core repulsion = 20619.646613 eV Total energy + Delta-G solvation = -3211.476111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.09605 -38.35902 -36.77660 -33.70745 -32.77894 -31.59084 -30.93949 -29.41313 -29.12627 -26.22194 -24.46092 -23.34510 -22.71161 -21.78578 -21.45174 -19.97703 -18.90559 -17.62873 -16.77691 -16.27287 -15.43332 -14.99481 -14.96391 -14.60958 -13.97798 -13.82760 -13.72810 -13.63527 -13.36838 -13.21880 -12.71737 -12.61361 -12.21222 -12.09698 -11.88829 -11.77913 -11.37195 -11.25056 -11.16683 -10.96634 -10.80113 -10.64452 -10.45577 -10.22494 -10.11637 -9.82965 -9.37205 -9.10609 -9.01196 -8.83781 -8.42199 -8.24311 -7.59990 -6.30866 -4.02929 1.23346 1.30910 3.44559 3.47310 3.61364 3.68078 4.19526 4.36988 4.55268 4.81841 4.82200 4.91693 5.07418 5.12203 5.25124 5.40270 5.41399 5.48993 5.67585 5.70365 5.76598 5.87924 5.91882 5.95216 6.01711 6.09402 6.17503 6.21322 6.37025 6.38854 6.41115 6.48528 6.49790 6.57584 6.64438 6.67108 6.84186 6.90166 6.91633 6.97628 7.50158 7.62214 7.67726 7.81101 7.83027 8.35326 8.50230 8.94485 9.70239 11.07806 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.004235 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.360010 B = 6610.417131 C = 7537.206034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.181 3.819 3 O -0.546 6.546 4 C 0.032 3.968 5 N -0.529 5.529 6 C 0.050 3.950 7 C -0.115 4.115 8 C -0.105 4.105 9 C 0.037 3.963 10 H 0.039 0.961 11 C -0.596 4.596 12 H 0.047 0.953 13 C 0.022 3.978 14 N -0.912 5.912 15 Si 1.069 2.931 16 H -0.290 1.290 17 H -0.288 1.288 18 H -0.287 1.287 19 C 0.068 3.932 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.105 4.105 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.369 0.631 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.014 0.986 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.040 0.960 38 H 0.274 0.726 39 H 0.013 0.987 40 H 0.062 0.938 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.245 4.031 -15.624 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.139 3.861 3 O -0.351 6.351 4 C -0.097 4.097 5 N -0.253 5.253 6 C -0.078 4.078 7 C -0.153 4.153 8 C -0.143 4.143 9 C 0.018 3.982 10 H 0.057 0.943 11 C -0.634 4.634 12 H 0.065 0.935 13 C -0.183 4.183 14 N -0.548 5.548 15 Si 0.898 3.102 16 H -0.216 1.216 17 H -0.215 1.215 18 H -0.213 1.213 19 C -0.059 4.059 20 C -0.110 4.110 21 C -0.130 4.130 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.142 4.142 25 C -0.123 4.123 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.216 0.784 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.032 0.968 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.031 0.969 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.359 2.944 -15.022 16.576 hybrid contribution 2.383 0.772 -0.547 2.564 sum 8.742 3.716 -15.570 18.239 Atomic orbital electron populations 1.21568 0.90863 1.02444 1.02933 1.20072 0.95713 0.80924 0.89342 1.86571 1.26040 1.26233 1.96256 1.22769 0.96248 0.99066 0.91629 1.61999 1.54086 1.04854 1.04382 1.22349 0.94322 0.92126 0.99002 1.21609 1.00451 0.97390 0.95872 1.21602 0.99725 0.97197 0.95765 1.18849 0.95466 0.91581 0.92286 0.94273 1.22006 1.18062 1.14956 1.08409 0.93485 1.25770 0.92384 0.98394 1.01749 1.70703 1.30010 1.40428 1.13679 0.83553 0.75647 0.75778 0.75226 1.21644 1.21475 1.21347 1.22554 0.98246 0.94845 0.90305 1.20664 0.99431 0.94491 0.96413 1.21233 0.98788 0.94193 0.98770 1.21165 0.99726 0.99900 0.93119 1.21155 1.00582 0.94504 0.98030 1.21141 1.00105 0.94723 0.98271 1.21015 0.98727 1.00397 0.92168 0.89595 0.93170 0.91601 0.78396 0.95188 0.90233 0.89242 0.96754 0.91933 0.93317 0.93250 0.94125 0.91410 0.96853 0.91977 0.85553 0.86085 0.86352 0.86256 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 8.60 37.15 0.32 -1.48 16 2 C 0.18 2.46 1.00 -91.78 -0.09 2.37 16 3 O -0.55 -7.05 9.14 -35.23 -0.32 -7.37 16 4 C 0.03 0.49 3.82 -3.82 -0.01 0.48 16 5 N -0.53 -9.82 3.56 -234.66 -0.84 -10.66 16 6 C 0.05 0.86 5.21 -3.84 -0.02 0.84 16 7 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 8 C -0.11 -2.27 5.26 -26.61 -0.14 -2.41 16 9 C 0.04 0.93 1.99 -91.69 -0.18 0.75 16 10 H 0.04 1.08 6.68 -51.93 -0.35 0.73 16 11 C -0.60 -16.58 8.32 -34.44 -0.29 -16.87 16 12 H 0.05 1.32 7.81 -52.49 -0.41 0.91 16 13 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 14 N -0.91 -27.19 13.62 55.43 0.76 -26.43 16 15 Si 1.07 25.18 29.91 -169.99 -5.08 20.10 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 19 C 0.07 1.52 4.68 -3.83 -0.02 1.50 16 20 C -0.11 -1.36 4.81 -104.63 -0.50 -1.86 16 21 C -0.11 -1.37 9.14 -39.59 -0.36 -1.73 16 22 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 23 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 25 C -0.11 -1.18 9.35 -39.59 -0.37 -1.55 16 26 H 0.09 1.46 7.46 -51.93 -0.39 1.07 16 27 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.37 3.73 8.99 45.56 0.41 4.14 16 30 H 0.03 0.45 7.97 -51.93 -0.41 0.04 16 31 H 0.08 1.27 5.79 -51.92 -0.30 0.97 16 32 H 0.09 1.40 5.22 -51.93 -0.27 1.13 16 33 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.27 8.18 6.66 -40.82 -0.27 7.91 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 1.51 7.92 -51.93 -0.41 1.10 16 41 H 0.13 1.55 6.03 -52.49 -0.32 1.23 16 42 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.13 1.34 7.49 -52.48 -0.39 0.95 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -29.99 348.74 -9.91 -39.90 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.56 Total: 5.89 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -3.12 Total: -26.69 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.08 Total: -37.09 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.32 Total: -7.37 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.10 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.99 -9.91 -39.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397853502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.122 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds