Wall clock time and date at job start Tue Mar 31 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47374 * 2 1 4 4 C 1.53000 * 109.47112 * 119.99723 * 2 1 3 5 5 N 1.46908 * 109.47289 * 305.75212 * 4 2 1 6 6 C 1.46843 * 110.99828 * 282.63546 * 5 4 2 7 7 C 1.53033 * 109.52525 * 174.16164 * 6 5 4 8 8 C 1.53117 * 109.27787 * 59.17369 * 7 6 5 9 9 C 1.53120 * 109.16486 * 302.34569 * 8 7 6 10 10 H 1.09000 * 109.50292 * 297.68228 * 9 8 7 11 11 C 1.50696 * 109.50514 * 177.59234 * 9 8 7 12 12 H 1.08001 * 120.00527 * 335.23839 * 11 9 8 13 13 C 1.37878 * 119.99602 * 155.23563 * 11 9 8 14 14 N 1.31511 * 120.00352 * 355.32042 * 13 11 9 15 15 Si 1.86805 * 119.99546 * 175.32218 * 13 11 9 16 16 H 1.48496 * 109.47633 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46899 * 239.99863 * 15 13 11 18 18 H 1.48497 * 109.46862 * 120.00378 * 15 13 11 19 19 C 1.46845 * 110.99782 * 158.42254 * 5 4 2 20 20 C 1.50699 * 109.47501 * 239.99982 * 2 1 3 21 21 C 1.38235 * 119.99788 * 269.73403 * 20 2 1 22 22 C 1.38230 * 120.00021 * 179.81037 * 21 20 2 23 23 C 1.38239 * 119.99811 * 0.39164 * 22 21 20 24 24 C 1.38233 * 120.00154 * 359.85663 * 23 22 21 25 25 C 1.38225 * 120.00037 * 89.99808 * 20 2 1 26 26 H 1.08998 * 109.47652 * 300.00359 * 1 2 3 27 27 H 1.09008 * 109.46751 * 59.99966 * 1 2 3 28 28 H 1.08995 * 109.47594 * 179.97438 * 1 2 3 29 29 H 0.96696 * 114.00013 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47310 * 185.74993 * 4 2 1 31 31 H 1.09009 * 109.46870 * 65.74917 * 4 2 1 32 32 H 1.09002 * 109.46359 * 54.13728 * 6 5 4 33 33 H 1.09008 * 109.45206 * 294.17188 * 6 5 4 34 34 H 1.09002 * 109.50103 * 299.23492 * 7 6 5 35 35 H 1.09001 * 109.50697 * 179.11805 * 7 6 5 36 36 H 1.09004 * 109.52035 * 182.44490 * 8 7 6 37 37 H 1.08996 * 109.57306 * 62.28761 * 8 7 6 38 38 H 0.96998 * 119.99979 * 5.34220 * 14 13 11 39 39 H 1.09000 * 109.46402 * 65.82688 * 19 5 4 40 40 H 1.09000 * 109.46409 * 305.85328 * 19 5 4 41 41 H 1.08001 * 120.00239 * 359.97438 * 21 20 2 42 42 H 1.08004 * 120.00599 * 180.22920 * 22 21 20 43 43 H 1.08002 * 119.99814 * 179.84020 * 23 22 21 44 44 H 1.08002 * 120.00020 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.00237 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.4402 -0.1134 2.4447 6 6 2.0996 1.1559 2.7769 7 6 1.3587 1.8297 3.9340 8 6 1.3635 0.8973 5.1486 9 6 0.7147 -0.4347 4.7623 10 1 -0.3241 -0.2649 4.4789 11 6 0.7684 -1.3794 5.9351 12 1 1.5273 -1.2561 6.6936 13 6 -0.1513 -2.4012 6.0399 14 7 -1.1306 -2.4966 5.1673 15 14 -0.0063 -3.6502 7.4214 16 1 1.1736 -3.3240 8.2620 17 1 0.1577 -5.0090 6.8451 18 1 -1.2347 -3.6111 8.2549 19 6 1.4744 -1.0429 3.5811 20 6 2.0324 -0.7104 -1.2304 21 6 2.2680 -2.0720 -1.1945 22 6 2.7251 -2.7244 -2.3242 23 6 2.9543 -2.0137 -3.4876 24 6 2.7236 -0.6511 -3.5220 25 6 2.2627 0.0005 -2.3933 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 2.9703 1.4236 0.0004 30 1 3.1250 -0.6329 1.3023 31 1 1.7630 -1.7743 1.1993 32 1 2.0857 1.8112 1.9059 33 1 3.1318 0.9630 3.0697 34 1 0.3303 2.0352 3.6371 35 1 1.8577 2.7642 4.1906 36 1 0.7995 1.3550 5.9613 37 1 2.3900 0.7227 5.4708 38 1 -1.1623 -1.8961 4.4063 39 1 2.5094 -1.2253 3.8701 40 1 1.0062 -1.9845 3.2943 41 1 2.0925 -2.6267 -0.2846 42 1 2.9058 -3.7889 -2.2974 43 1 3.3139 -2.5229 -4.3695 44 1 2.9030 -0.0958 -4.4308 45 1 2.0823 1.0650 -2.4202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397853502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:56 Heat of formation + Delta-G solvation = -51.250288 kcal Electronic energy + Delta-G solvation = -23831.880380 eV Core-core repulsion = 20619.646613 eV Total energy + Delta-G solvation = -3212.233767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.15828 -39.71237 -37.99000 -35.49219 -34.24106 -32.91196 -31.77158 -31.23785 -30.19628 -27.58977 -26.51421 -24.52240 -23.77612 -23.39872 -22.78893 -21.06389 -20.62825 -18.88164 -18.50064 -17.31250 -16.64613 -16.25734 -16.20655 -15.68343 -15.66433 -15.53335 -15.08565 -14.99140 -14.78408 -14.29786 -14.23432 -13.70316 -13.67268 -13.33361 -13.25110 -13.12288 -12.96649 -12.70854 -12.55847 -12.46977 -12.19507 -12.05845 -11.94773 -11.73050 -11.62097 -11.48344 -11.03406 -10.89824 -10.44387 -10.27646 -9.83992 -9.69747 -9.11959 -8.58076 -6.30625 0.38746 0.48265 1.51621 1.60161 1.76641 2.56202 2.83100 2.92351 3.24015 3.27242 3.72072 3.82376 3.99720 4.11314 4.13993 4.15461 4.19587 4.22366 4.29586 4.48100 4.55373 4.61111 4.67742 4.69346 4.75704 4.81671 4.85651 4.92436 4.94502 4.99201 5.08890 5.13497 5.15750 5.22416 5.25614 5.38418 5.56427 5.57604 5.60813 5.65292 5.72937 5.98844 6.09337 6.25909 6.30540 6.34068 6.70630 6.77041 7.50572 8.80187 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.004235 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.360010 B = 6610.417131 C = 7537.206034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.195 3.805 3 O -0.549 6.549 4 C 0.034 3.966 5 N -0.536 5.536 6 C 0.052 3.948 7 C -0.109 4.109 8 C -0.101 4.101 9 C 0.033 3.967 10 H 0.005 0.995 11 C -0.609 4.609 12 H 0.040 0.960 13 C -0.027 4.027 14 N -0.936 5.936 15 Si 1.114 2.886 16 H -0.274 1.274 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.088 3.912 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.109 4.109 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.384 0.616 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.019 0.981 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.260 0.740 39 H 0.006 0.994 40 H 0.032 0.968 41 H 0.115 0.885 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.950 4.657 -17.277 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.154 3.846 3 O -0.357 6.357 4 C -0.094 4.094 5 N -0.260 5.260 6 C -0.075 4.075 7 C -0.147 4.147 8 C -0.138 4.138 9 C 0.013 3.987 10 H 0.023 0.977 11 C -0.648 4.648 12 H 0.058 0.942 13 C -0.226 4.226 14 N -0.573 5.573 15 Si 0.937 3.063 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.040 4.040 20 C -0.121 4.121 21 C -0.148 4.148 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.127 4.127 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.233 0.767 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.024 0.976 40 H 0.050 0.950 41 H 0.133 0.867 42 H 0.154 0.846 43 H 0.163 0.837 44 H 0.164 0.836 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.088 3.597 -16.690 18.891 hybrid contribution 1.883 0.617 -0.101 1.984 sum 9.971 4.214 -16.790 19.977 Atomic orbital electron populations 1.21504 0.92168 1.01725 1.02219 1.19733 0.94668 0.81237 0.88991 1.86522 1.27542 1.25446 1.96142 1.22821 0.96683 0.98791 0.91146 1.61913 1.55459 1.04792 1.03825 1.22430 0.94049 0.91419 0.99578 1.21576 1.00619 0.97965 0.94541 1.21502 0.98976 0.96148 0.97216 1.18812 0.94224 0.93146 0.92479 0.97676 1.22363 1.17674 1.15550 1.09196 0.94156 1.27164 0.91845 1.00204 1.03374 1.70825 1.31372 1.40886 1.14201 0.82967 0.76447 0.73917 0.72959 1.19915 1.20559 1.20570 1.22054 0.96707 0.94228 0.91016 1.20487 1.00813 0.94542 0.96275 1.21274 0.99983 0.94373 0.99204 1.21411 0.99353 1.00866 0.92997 1.21516 0.99461 0.94663 0.98465 1.21481 0.98933 0.95016 0.98736 1.21143 0.98715 1.00780 0.92078 0.92055 0.91963 0.92431 0.76686 0.94150 0.91268 0.86844 0.96262 0.92880 0.90028 0.94095 0.94067 0.92894 0.97618 0.94956 0.86687 0.84607 0.83690 0.83642 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.56 8.60 71.98 0.62 -2.94 16 2 C 0.19 5.18 1.00 -11.54 -0.01 5.17 16 3 O -0.55 -13.04 9.14 -148.98 -1.36 -14.40 16 4 C 0.03 1.06 3.82 86.30 0.33 1.39 16 5 N -0.54 -20.14 3.56 -896.32 -3.19 -23.34 16 6 C 0.05 1.73 5.21 86.33 0.45 2.18 16 7 C -0.11 -3.86 6.09 30.64 0.19 -3.68 16 8 C -0.10 -4.38 5.26 30.67 0.16 -4.22 16 9 C 0.03 1.68 1.99 -11.49 -0.02 1.66 16 10 H 0.01 0.29 6.68 -2.39 -0.02 0.28 16 11 C -0.61 -34.92 8.32 25.60 0.21 -34.70 16 12 H 0.04 2.31 7.81 -2.91 -0.02 2.29 16 13 C -0.03 -1.57 5.46 84.66 0.46 -1.11 16 14 N -0.94 -57.83 13.62 21.45 0.29 -57.54 16 15 Si 1.11 51.14 29.91 68.60 2.05 53.19 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 C 0.09 4.10 4.68 86.33 0.40 4.51 16 20 C -0.12 -2.85 4.81 -19.87 -0.10 -2.95 16 21 C -0.13 -3.11 9.14 22.27 0.20 -2.91 16 22 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 23 C -0.12 -2.07 10.05 22.27 0.22 -1.84 16 24 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 25 C -0.11 -2.20 9.35 22.27 0.21 -1.99 16 26 H 0.06 2.13 7.46 -2.39 -0.02 2.11 16 27 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.38 6.69 8.99 -74.06 -0.67 6.02 16 30 H 0.04 1.18 7.97 -2.39 -0.02 1.16 16 31 H 0.07 2.30 5.79 -2.38 -0.01 2.29 16 32 H 0.11 3.26 5.22 -2.39 -0.01 3.25 16 33 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.04 1.80 8.14 -2.38 -0.02 1.79 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.26 16.43 6.66 -92.71 -0.62 15.81 16 39 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.03 1.66 7.92 -2.39 -0.02 1.65 16 41 H 0.12 2.92 6.03 -2.91 -0.02 2.90 16 42 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 44 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.13 2.47 7.49 -2.91 -0.02 2.45 16 Total: -1.00 -66.47 348.74 2.02 -64.45 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.45 Total: 23.26 kcal Atomic # 6 Polarization: -49.41 SS G_CDS: 3.78 Total: -45.63 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -2.90 Total: -80.88 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -1.36 Total: -14.40 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.05 Total: 53.19 kcal Total: -66.47 2.02 -64.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397853502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.197 kcal (2) G-P(sol) polarization free energy of solvation -66.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds