Wall clock time and date at job start Tue Mar 31 2020 06:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42911 * 109.47034 * 2 1 4 4 C 1.52993 * 109.47414 * 120.00178 * 2 1 3 5 5 N 1.46898 * 109.47325 * 306.84579 * 4 2 1 6 6 C 1.46849 * 111.00116 * 168.23478 * 5 4 2 7 7 C 1.53036 * 109.52624 * 185.84089 * 6 5 4 8 8 C 1.53125 * 109.27397 * 300.82097 * 7 6 5 9 9 C 1.53113 * 109.16056 * 57.65501 * 8 7 6 10 10 H 1.09000 * 109.53950 * 62.30321 * 9 8 7 11 11 C 1.50706 * 109.50284 * 182.40351 * 9 8 7 12 12 H 1.08002 * 120.00360 * 119.80250 * 11 9 8 13 13 C 1.37878 * 119.99818 * 299.80150 * 11 9 8 14 14 N 1.31516 * 119.99886 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99849 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47197 * 90.00225 * 15 13 11 17 17 H 1.48497 * 109.46962 * 210.00030 * 15 13 11 18 18 H 1.48501 * 109.47180 * 329.99793 * 15 13 11 19 19 C 1.46849 * 111.00155 * 292.44294 * 5 4 2 20 20 C 1.50703 * 109.47114 * 240.00462 * 2 1 3 21 21 C 1.38226 * 119.99956 * 269.72489 * 20 2 1 22 22 C 1.38237 * 119.99920 * 179.76219 * 21 20 2 23 23 C 1.38235 * 120.00008 * 0.48609 * 22 21 20 24 24 C 1.38234 * 119.99886 * 359.78936 * 23 22 21 25 25 C 1.38236 * 119.99859 * 89.99493 * 20 2 1 26 26 H 1.08994 * 109.47295 * 65.51647 * 1 2 3 27 27 H 1.08998 * 109.46992 * 185.52350 * 1 2 3 28 28 H 1.09004 * 109.46651 * 305.51315 * 1 2 3 29 29 H 0.96695 * 113.99920 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46997 * 66.84767 * 4 2 1 31 31 H 1.09005 * 109.47232 * 186.84580 * 4 2 1 32 32 H 1.09000 * 109.46182 * 305.85557 * 6 5 4 33 33 H 1.09004 * 109.46369 * 65.82217 * 6 5 4 34 34 H 1.08999 * 109.50667 * 180.88445 * 7 6 5 35 35 H 1.08997 * 109.50053 * 60.75691 * 7 6 5 36 36 H 1.09001 * 109.52568 * 297.74357 * 8 7 6 37 37 H 1.09005 * 109.57096 * 177.58731 * 8 7 6 38 38 H 0.97001 * 119.99830 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.46524 * 294.17891 * 19 5 4 40 40 H 1.09006 * 109.46119 * 54.15535 * 19 5 4 41 41 H 1.07999 * 119.99897 * 359.97438 * 21 20 2 42 42 H 1.08008 * 119.99880 * 180.24839 * 22 21 20 43 43 H 1.08003 * 119.99834 * 179.76458 * 23 22 21 44 44 H 1.07996 * 119.99750 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.00457 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 1.4203 -0.1307 2.4429 6 6 1.6622 -0.9635 3.6280 7 6 0.8838 -0.3980 4.8181 8 6 1.3374 1.0408 5.0810 9 6 1.1196 1.8754 3.8160 10 1 0.0569 1.9018 3.5751 11 6 1.6181 3.2788 4.0471 12 1 2.4065 3.6806 3.4279 13 6 1.0676 4.0496 5.0490 14 7 0.1079 3.5600 5.8032 15 14 1.6860 5.7888 5.3359 16 1 0.8949 6.7377 4.5119 17 1 1.5366 6.1366 6.7718 18 1 3.1180 5.8746 4.9522 19 6 1.8911 1.2440 2.6550 20 6 2.0323 -0.7103 -1.2305 21 6 2.2681 -2.0719 -1.1948 22 6 2.7242 -2.7243 -2.3249 23 6 2.9541 -2.0133 -3.4880 24 6 2.7237 -0.6508 -3.5221 25 6 2.2626 0.0007 -2.3934 26 1 -0.3633 0.4259 -0.9352 27 1 -0.3633 -1.0229 0.0989 28 1 -0.3633 0.5970 0.8365 29 1 2.9703 1.4237 -0.0004 30 1 1.7802 -1.7782 1.1899 31 1 3.1232 -0.6164 1.3125 32 1 1.3315 -1.9829 3.4292 33 1 2.7275 -0.9660 3.8589 34 1 1.0760 -1.0072 5.7013 35 1 -0.1826 -0.4080 4.5933 36 1 2.3952 1.0470 5.3440 37 1 0.7558 1.4630 5.9006 38 1 -0.2791 4.1022 6.5083 39 1 2.9554 1.2312 2.8904 40 1 1.7265 1.8280 1.7494 41 1 2.0927 -2.6265 -0.2848 42 1 2.9046 -3.7888 -2.2981 43 1 3.3141 -2.5225 -4.3698 44 1 2.9037 -0.0953 -4.4306 45 1 2.0829 1.0654 -2.4200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397853504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:59 Heat of formation + Delta-G solvation = -24.407888 kcal Electronic energy + Delta-G solvation = -23853.043238 eV Core-core repulsion = 20641.973445 eV Total energy + Delta-G solvation = -3211.069793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.08929 -38.28976 -36.59479 -33.65727 -32.47834 -31.28039 -30.91262 -29.72739 -29.05235 -26.12572 -24.84557 -23.28184 -22.66005 -21.69724 -21.17146 -19.90992 -18.52109 -17.62955 -16.41971 -16.13547 -15.43249 -15.00857 -14.89482 -14.64068 -14.36366 -13.81544 -13.74462 -13.40987 -13.04417 -12.95847 -12.55855 -12.35948 -12.20558 -12.07650 -11.86432 -11.75493 -11.49550 -11.17585 -11.10698 -10.88522 -10.67574 -10.62114 -10.51728 -10.09610 -9.89145 -9.66759 -9.31012 -9.01552 -8.87687 -8.75307 -8.44308 -8.22267 -7.57308 -5.89603 -3.94572 1.23691 1.30715 3.35844 3.42172 3.45205 3.68276 4.26009 4.40518 4.52310 4.83506 4.84326 4.90928 5.08227 5.15195 5.28527 5.40002 5.40648 5.49147 5.66859 5.78204 5.83782 5.86892 5.94249 5.98588 6.11214 6.14084 6.21583 6.34374 6.37802 6.41140 6.50964 6.53997 6.70689 6.76196 6.78454 6.85153 6.90654 7.22522 7.31116 7.48718 7.75943 7.83332 7.84655 7.92807 8.20316 8.27128 8.59037 9.09856 9.69055 11.16546 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.004096 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.111301 B = 6834.915699 C = 7641.702874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.178 3.822 3 O -0.537 6.537 4 C 0.033 3.967 5 N -0.528 5.528 6 C 0.062 3.938 7 C -0.116 4.116 8 C -0.112 4.112 9 C 0.057 3.943 10 H 0.032 0.968 11 C -0.508 4.508 12 H 0.052 0.948 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.888 3.112 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.044 3.956 20 C -0.107 4.107 21 C -0.114 4.114 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.104 4.104 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.371 0.629 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.054 0.946 33 H 0.020 0.980 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.089 0.911 38 H 0.258 0.742 39 H 0.008 0.992 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -12.299 -14.520 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.137 3.863 3 O -0.343 6.343 4 C -0.096 4.096 5 N -0.252 5.252 6 C -0.066 4.066 7 C -0.154 4.154 8 C -0.150 4.150 9 C 0.038 3.962 10 H 0.050 0.950 11 C -0.547 4.547 12 H 0.071 0.929 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.082 4.082 20 C -0.108 4.108 21 C -0.132 4.132 22 C -0.141 4.141 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.122 4.122 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.219 0.781 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.026 0.974 40 H 0.121 0.879 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.166 -12.101 -14.427 19.095 hybrid contribution 1.944 0.616 0.371 2.073 sum 5.111 -11.485 -14.056 18.858 Atomic orbital electron populations 1.21566 0.90907 1.02399 1.02855 1.20012 0.95763 0.81412 0.89091 1.86644 1.26341 1.25442 1.95875 1.22753 0.96248 0.98640 0.91968 1.62026 1.57987 1.03787 1.01445 1.22038 0.97442 0.95569 0.91583 1.21654 0.99983 0.98900 0.94816 1.21669 0.98903 0.91495 1.02922 1.18633 0.96031 0.92591 0.88972 0.95008 1.21164 1.19646 0.98074 1.15852 0.92929 1.24931 0.95022 0.97907 0.96070 1.69897 1.26060 1.36405 1.20581 0.86658 0.79159 0.85354 0.77167 1.20742 1.21406 1.20095 1.22883 0.95796 0.86626 1.02870 1.20687 0.99207 0.94424 0.96447 1.21170 0.99284 0.94173 0.98571 1.21132 1.00025 0.99749 0.93201 1.21145 1.00661 0.94525 0.98034 1.21159 0.99896 0.94696 0.98344 1.21077 0.98338 1.00626 0.92109 0.93164 0.91858 0.89409 0.78124 0.90745 0.95389 0.92793 0.96217 0.93759 0.92135 0.95428 0.89283 0.93210 0.97387 0.87905 0.85750 0.86238 0.86400 0.86205 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 8.48 37.16 0.32 -1.44 16 2 C 0.18 2.47 0.92 -91.77 -0.08 2.39 16 3 O -0.54 -8.10 8.66 -35.23 -0.31 -8.40 16 4 C 0.03 0.48 3.82 -3.83 -0.01 0.46 16 5 N -0.53 -9.54 3.70 -234.67 -0.87 -10.41 16 6 C 0.06 1.09 5.46 -3.83 -0.02 1.07 16 7 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 8 C -0.11 -2.69 5.03 -26.61 -0.13 -2.83 16 9 C 0.06 1.43 2.26 -91.69 -0.21 1.23 16 10 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 11 C -0.51 -14.16 8.56 -34.44 -0.29 -14.46 16 12 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 13 C 0.06 1.73 5.31 -17.82 -0.09 1.63 16 14 N -0.89 -25.79 11.36 55.43 0.63 -25.16 16 15 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.04 0.94 4.31 -3.83 -0.02 0.93 16 20 C -0.11 -1.30 4.81 -104.63 -0.50 -1.80 16 21 C -0.11 -1.26 9.14 -39.59 -0.36 -1.62 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 25 C -0.10 -1.19 9.35 -39.58 -0.37 -1.56 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.53 7.63 -51.93 -0.40 1.14 16 29 H 0.37 4.64 9.04 45.56 0.41 5.05 16 30 H 0.07 0.97 5.92 -51.93 -0.31 0.66 16 31 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.05 0.82 8.00 -51.93 -0.42 0.41 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.10 2.20 4.87 -51.93 -0.25 1.95 16 41 H 0.12 1.26 6.01 -52.49 -0.32 0.95 16 42 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 43 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.13 1.47 7.48 -52.48 -0.39 1.08 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -29.67 346.83 -10.08 -39.76 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.60 Total: 5.69 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -3.14 Total: -23.30 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.24 Total: -35.57 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.31 Total: -8.40 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.67 -10.08 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397853504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.348 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds