Wall clock time and date at job start Tue Mar 31 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42911 * 109.47034 * 2 1 4 4 C 1.52993 * 109.47414 * 120.00178 * 2 1 3 5 5 N 1.46898 * 109.47325 * 306.84579 * 4 2 1 6 6 C 1.46849 * 111.00116 * 168.23478 * 5 4 2 7 7 C 1.53036 * 109.52624 * 185.84089 * 6 5 4 8 8 C 1.53125 * 109.27397 * 300.82097 * 7 6 5 9 9 C 1.53113 * 109.16056 * 57.65501 * 8 7 6 10 10 H 1.09000 * 109.53950 * 62.30321 * 9 8 7 11 11 C 1.50706 * 109.50284 * 182.40351 * 9 8 7 12 12 H 1.08002 * 120.00360 * 119.80250 * 11 9 8 13 13 C 1.37878 * 119.99818 * 299.80150 * 11 9 8 14 14 N 1.31516 * 119.99886 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99849 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47197 * 90.00225 * 15 13 11 17 17 H 1.48497 * 109.46962 * 210.00030 * 15 13 11 18 18 H 1.48501 * 109.47180 * 329.99793 * 15 13 11 19 19 C 1.46849 * 111.00155 * 292.44294 * 5 4 2 20 20 C 1.50703 * 109.47114 * 240.00462 * 2 1 3 21 21 C 1.38226 * 119.99956 * 269.72489 * 20 2 1 22 22 C 1.38237 * 119.99920 * 179.76219 * 21 20 2 23 23 C 1.38235 * 120.00008 * 0.48609 * 22 21 20 24 24 C 1.38234 * 119.99886 * 359.78936 * 23 22 21 25 25 C 1.38236 * 119.99859 * 89.99493 * 20 2 1 26 26 H 1.08994 * 109.47295 * 65.51647 * 1 2 3 27 27 H 1.08998 * 109.46992 * 185.52350 * 1 2 3 28 28 H 1.09004 * 109.46651 * 305.51315 * 1 2 3 29 29 H 0.96695 * 113.99920 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46997 * 66.84767 * 4 2 1 31 31 H 1.09005 * 109.47232 * 186.84580 * 4 2 1 32 32 H 1.09000 * 109.46182 * 305.85557 * 6 5 4 33 33 H 1.09004 * 109.46369 * 65.82217 * 6 5 4 34 34 H 1.08999 * 109.50667 * 180.88445 * 7 6 5 35 35 H 1.08997 * 109.50053 * 60.75691 * 7 6 5 36 36 H 1.09001 * 109.52568 * 297.74357 * 8 7 6 37 37 H 1.09005 * 109.57096 * 177.58731 * 8 7 6 38 38 H 0.97001 * 119.99830 * 179.97438 * 14 13 11 39 39 H 1.09005 * 109.46524 * 294.17891 * 19 5 4 40 40 H 1.09006 * 109.46119 * 54.15535 * 19 5 4 41 41 H 1.07999 * 119.99897 * 359.97438 * 21 20 2 42 42 H 1.08008 * 119.99880 * 180.24839 * 22 21 20 43 43 H 1.08003 * 119.99834 * 179.76458 * 23 22 21 44 44 H 1.07996 * 119.99750 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.00457 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 1.4203 -0.1307 2.4429 6 6 1.6622 -0.9635 3.6280 7 6 0.8838 -0.3980 4.8181 8 6 1.3374 1.0408 5.0810 9 6 1.1196 1.8754 3.8160 10 1 0.0569 1.9018 3.5751 11 6 1.6181 3.2788 4.0471 12 1 2.4065 3.6806 3.4279 13 6 1.0676 4.0496 5.0490 14 7 0.1079 3.5600 5.8032 15 14 1.6860 5.7888 5.3359 16 1 0.8949 6.7377 4.5119 17 1 1.5366 6.1366 6.7718 18 1 3.1180 5.8746 4.9522 19 6 1.8911 1.2440 2.6550 20 6 2.0323 -0.7103 -1.2305 21 6 2.2681 -2.0719 -1.1948 22 6 2.7242 -2.7243 -2.3249 23 6 2.9541 -2.0133 -3.4880 24 6 2.7237 -0.6508 -3.5221 25 6 2.2626 0.0007 -2.3934 26 1 -0.3633 0.4259 -0.9352 27 1 -0.3633 -1.0229 0.0989 28 1 -0.3633 0.5970 0.8365 29 1 2.9703 1.4237 -0.0004 30 1 1.7802 -1.7782 1.1899 31 1 3.1232 -0.6164 1.3125 32 1 1.3315 -1.9829 3.4292 33 1 2.7275 -0.9660 3.8589 34 1 1.0760 -1.0072 5.7013 35 1 -0.1826 -0.4080 4.5933 36 1 2.3952 1.0470 5.3440 37 1 0.7558 1.4630 5.9006 38 1 -0.2791 4.1022 6.5083 39 1 2.9554 1.2312 2.8904 40 1 1.7265 1.8280 1.7494 41 1 2.0927 -2.6265 -0.2848 42 1 2.9046 -3.7888 -2.2981 43 1 3.3141 -2.5225 -4.3698 44 1 2.9037 -0.0953 -4.4306 45 1 2.0829 1.0654 -2.4200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397853504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:58 Heat of formation + Delta-G solvation = -41.812625 kcal Electronic energy + Delta-G solvation = -23853.797964 eV Core-core repulsion = 20641.973445 eV Total energy + Delta-G solvation = -3211.824519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.12090 -39.57322 -37.85232 -35.43056 -33.89339 -32.69616 -31.71700 -31.57667 -30.08673 -27.45180 -26.86115 -24.41775 -23.65193 -23.15864 -22.66097 -20.97898 -20.30606 -18.69764 -18.23726 -17.27175 -16.73367 -16.54951 -16.07122 -15.97355 -15.47640 -15.18015 -14.95574 -14.79661 -14.35451 -14.29634 -14.02069 -13.91067 -13.63524 -13.21902 -13.07103 -13.04085 -12.85343 -12.77354 -12.66490 -12.40080 -12.29507 -12.05173 -11.74802 -11.69341 -11.57990 -11.36137 -11.09381 -10.73443 -10.35640 -10.16388 -9.78838 -9.63228 -9.03617 -8.05231 -6.18426 0.44091 0.53328 1.40930 1.41529 1.51562 2.44280 2.88977 3.05555 3.21478 3.33084 3.78742 3.91614 4.10899 4.17902 4.20759 4.26403 4.31423 4.34453 4.45163 4.58765 4.67125 4.68695 4.75164 4.80190 4.86566 4.97387 5.00674 5.02603 5.09797 5.14106 5.16949 5.20360 5.38852 5.43104 5.46394 5.59654 5.61138 5.65516 5.66091 5.71380 6.01468 6.14080 6.22359 6.26571 6.43383 6.53160 6.81042 6.95167 7.48856 8.99478 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.004096 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.111301 B = 6834.915699 C = 7641.702874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.181 3.819 3 O -0.557 6.557 4 C 0.036 3.964 5 N -0.536 5.536 6 C 0.064 3.936 7 C -0.109 4.109 8 C -0.105 4.105 9 C 0.055 3.945 10 H -0.009 1.009 11 C -0.531 4.531 12 H 0.049 0.951 13 C 0.012 3.988 14 N -0.917 5.917 15 Si 0.952 3.048 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.269 1.269 19 C 0.064 3.936 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.118 4.118 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.380 0.620 30 H 0.100 0.900 31 H 0.032 0.968 32 H 0.090 0.910 33 H 0.022 0.978 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.018 0.982 37 H 0.054 0.946 38 H 0.259 0.741 39 H -0.001 1.001 40 H 0.099 0.901 41 H 0.134 0.866 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.705 -14.170 -16.104 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.141 3.859 3 O -0.364 6.364 4 C -0.092 4.092 5 N -0.260 5.260 6 C -0.064 4.064 7 C -0.147 4.147 8 C -0.144 4.144 9 C 0.036 3.964 10 H 0.009 0.991 11 C -0.570 4.570 12 H 0.067 0.933 13 C -0.186 4.186 14 N -0.557 5.557 15 Si 0.778 3.222 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.063 4.063 20 C -0.118 4.118 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.146 4.146 25 C -0.136 4.136 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.229 0.771 30 H 0.118 0.882 31 H 0.050 0.950 32 H 0.108 0.892 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.017 0.983 40 H 0.117 0.883 41 H 0.152 0.848 42 H 0.162 0.838 43 H 0.162 0.838 44 H 0.156 0.844 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.455 -13.984 -16.024 21.729 hybrid contribution 1.527 1.167 0.808 2.085 sum 5.982 -12.817 -15.216 20.774 Atomic orbital electron populations 1.21514 0.91889 1.02608 1.01376 1.19953 0.95044 0.81025 0.89910 1.86595 1.27295 1.26617 1.95911 1.22837 0.96209 0.99766 0.90359 1.61932 1.58607 1.02478 1.02998 1.22058 0.97184 0.96865 0.90281 1.21563 0.99598 0.96364 0.97187 1.21476 0.97631 0.94230 1.01028 1.18557 0.93964 0.92596 0.91297 0.99070 1.21540 1.19740 0.99706 1.15999 0.93308 1.25719 0.95198 1.01868 0.95829 1.70045 1.26967 1.37753 1.20913 0.85647 0.78868 0.80513 0.77159 1.20230 1.20867 1.19333 1.22498 0.94317 0.88689 1.00819 1.20469 1.00705 0.95000 0.95666 1.21323 0.99460 0.93626 0.99603 1.21459 0.99030 1.01041 0.92720 1.21513 0.99578 0.94296 0.98934 1.21419 0.99302 0.95374 0.98454 1.21121 0.99229 1.00479 0.92739 0.93011 0.90336 0.92870 0.77101 0.88223 0.95019 0.89178 0.96001 0.91421 0.93152 0.96345 0.92698 0.93210 0.98254 0.88288 0.84846 0.83814 0.83825 0.84409 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.41 8.48 71.98 0.61 -2.80 16 2 C 0.18 4.91 0.92 -11.54 -0.01 4.89 16 3 O -0.56 -17.00 8.66 -148.98 -1.29 -18.29 16 4 C 0.04 1.00 3.82 86.30 0.33 1.33 16 5 N -0.54 -19.02 3.70 -896.36 -3.32 -22.34 16 6 C 0.06 2.13 5.46 86.33 0.47 2.60 16 7 C -0.11 -4.29 6.09 30.65 0.19 -4.10 16 8 C -0.11 -5.24 5.03 30.67 0.15 -5.09 16 9 C 0.05 2.89 2.26 -11.49 -0.03 2.87 16 10 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 11 C -0.53 -30.62 8.56 25.60 0.22 -30.40 16 12 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 13 C 0.01 0.70 5.31 84.65 0.45 1.15 16 14 N -0.92 -54.95 11.36 21.45 0.24 -54.71 16 15 Si 0.95 45.14 29.54 68.60 2.03 47.17 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 C 0.06 2.77 4.31 86.32 0.37 3.14 16 20 C -0.12 -2.68 4.81 -19.87 -0.10 -2.77 16 21 C -0.12 -2.37 9.14 22.27 0.20 -2.16 16 22 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 23 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 24 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 25 C -0.12 -2.57 9.35 22.27 0.21 -2.36 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.92 7.63 -2.39 -0.02 1.90 16 29 H 0.38 9.60 9.04 -74.06 -0.67 8.93 16 30 H 0.10 2.26 5.92 -2.39 -0.01 2.24 16 31 H 0.03 0.87 8.11 -2.38 -0.02 0.85 16 32 H 0.09 2.41 8.00 -2.39 -0.02 2.39 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.05 3.09 6.16 -2.38 -0.01 3.07 16 38 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 39 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 40 H 0.10 4.38 4.87 -2.38 -0.01 4.37 16 41 H 0.13 2.25 6.01 -2.91 -0.02 2.23 16 42 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 44 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.12 2.76 7.48 -2.91 -0.02 2.74 16 Total: -1.00 -66.27 346.83 1.70 -64.57 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.30 Total: 22.88 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 3.74 Total: -39.28 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -3.07 Total: -77.05 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -1.29 Total: -18.29 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.27 1.70 -64.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397853504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.758 kcal (2) G-P(sol) polarization free energy of solvation -66.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds