Wall clock time and date at job start Tue Mar 31 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47021 * 2 1 4 4 C 1.53004 * 109.46912 * 239.99680 * 2 1 3 5 5 N 1.46898 * 109.47049 * 51.72468 * 4 2 1 6 6 C 1.46851 * 111.00049 * 52.37689 * 5 4 2 7 7 C 1.53035 * 109.52474 * 185.83630 * 6 5 4 8 8 C 1.53123 * 109.28115 * 300.82481 * 7 6 5 9 9 C 1.53100 * 109.15404 * 57.65095 * 8 7 6 10 10 H 1.09000 * 109.50481 * 62.28908 * 9 8 7 11 11 C 1.50697 * 109.48913 * 182.39966 * 9 8 7 12 12 H 1.08007 * 119.99831 * 119.80930 * 11 9 8 13 13 C 1.37877 * 119.99891 * 299.80778 * 11 9 8 14 14 N 1.31505 * 120.00280 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99722 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47111 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47301 * 120.00223 * 15 13 11 18 18 H 1.48509 * 109.46806 * 240.00283 * 15 13 11 19 19 C 1.46851 * 111.00003 * 176.58890 * 5 4 2 20 20 C 1.50697 * 109.46955 * 120.00024 * 2 1 3 21 21 C 1.38240 * 120.00181 * 89.72656 * 20 2 1 22 22 C 1.38237 * 119.99888 * 179.81017 * 21 20 2 23 23 C 1.38235 * 119.99832 * 0.41776 * 22 21 20 24 24 C 1.38235 * 120.00197 * 359.81239 * 23 22 21 25 25 C 1.38231 * 119.99904 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.46977 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46956 * 300.00311 * 1 2 3 28 28 H 1.09000 * 109.46802 * 59.99930 * 1 2 3 29 29 H 0.96706 * 113.99749 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47053 * 291.72164 * 4 2 1 31 31 H 1.08999 * 109.46548 * 171.72074 * 4 2 1 32 32 H 1.08990 * 109.46544 * 305.85903 * 6 5 4 33 33 H 1.09002 * 109.45909 * 65.83939 * 6 5 4 34 34 H 1.09001 * 109.50112 * 60.75979 * 7 6 5 35 35 H 1.08996 * 109.50789 * 180.88206 * 7 6 5 36 36 H 1.09000 * 109.52420 * 177.55542 * 8 7 6 37 37 H 1.08999 * 109.52117 * 297.68919 * 8 7 6 38 38 H 0.97005 * 120.00425 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.46096 * 294.17814 * 19 5 4 40 40 H 1.08993 * 109.46121 * 54.15268 * 19 5 4 41 41 H 1.07994 * 119.99727 * 359.97438 * 21 20 2 42 42 H 1.07997 * 120.00057 * 180.20722 * 22 21 20 43 43 H 1.08003 * 119.99893 * 179.79135 * 23 22 21 44 44 H 1.08003 * 119.99536 * 179.97438 * 24 23 22 45 45 H 1.08000 * 119.99537 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.3944 -0.1536 -2.4403 6 6 1.5408 1.3072 -2.4725 7 6 0.7360 1.8763 -3.6431 8 6 1.2449 1.2647 -4.9514 9 6 1.1263 -0.2597 -4.8728 10 1 0.0782 -0.5379 -4.7619 11 6 1.6797 -0.8727 -6.1333 12 1 2.5144 -1.5561 -6.0800 13 6 1.1206 -0.5611 -7.3545 14 7 0.1047 0.2713 -7.4194 15 14 1.8063 -1.3216 -8.9169 16 1 2.9407 -2.2170 -8.5751 17 1 0.7425 -2.1059 -9.5939 18 1 2.2814 -0.2458 -9.8238 19 6 1.9199 -0.7671 -3.6667 20 6 2.0323 -0.7104 1.2304 21 6 2.2573 -2.0740 1.1979 22 6 2.7218 -2.7249 2.3255 23 6 2.9531 -2.0138 3.4881 24 6 2.7235 -0.6510 3.5220 25 6 2.2623 0.0004 2.3935 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 2.9704 1.4236 0.0004 30 1 1.8025 -1.7828 -1.1783 31 1 3.1199 -0.5949 -1.3263 32 1 1.1715 1.7299 -1.5382 33 1 2.5929 1.5640 -2.5965 34 1 -0.3182 1.6316 -3.5130 35 1 0.8575 2.9590 -3.6761 36 1 0.6458 1.6343 -5.7836 37 1 2.2881 1.5425 -5.1017 38 1 -0.2884 0.4908 -8.2786 39 1 2.9702 -0.5006 -3.7848 40 1 1.8256 -1.8509 -3.5997 41 1 2.0728 -2.6302 0.2908 42 1 2.9008 -3.7897 2.2991 43 1 3.3128 -2.5229 4.3701 44 1 2.9039 -0.0956 4.4306 45 1 2.0826 1.0650 2.4202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397853506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:01 Heat of formation + Delta-G solvation = -21.507938 kcal Electronic energy + Delta-G solvation = -23718.769638 eV Core-core repulsion = 20507.825597 eV Total energy + Delta-G solvation = -3210.944042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.23777 -38.38789 -36.64795 -33.63954 -32.59952 -31.26976 -30.96408 -29.88772 -28.99844 -26.23277 -24.84411 -23.32162 -22.69489 -21.62422 -21.34406 -19.91149 -18.51122 -17.79534 -16.51726 -16.21768 -15.49917 -15.10667 -14.84931 -14.63383 -14.50999 -13.84287 -13.64152 -13.35209 -13.27675 -12.99426 -12.62423 -12.32359 -12.23106 -12.09413 -12.00999 -11.84832 -11.47788 -11.33851 -11.08052 -10.93675 -10.73743 -10.68156 -10.53455 -10.10830 -9.78613 -9.64850 -9.36765 -9.05526 -8.94115 -8.74030 -8.59454 -8.24277 -7.58273 -5.93908 -4.00113 1.18675 1.26568 3.31403 3.39395 3.42946 3.63469 4.17166 4.32182 4.48748 4.76015 4.79908 4.87051 5.02868 5.05095 5.23311 5.35389 5.36065 5.45188 5.70357 5.82290 5.84080 5.93283 5.98040 6.00856 6.03626 6.13375 6.26227 6.32453 6.36908 6.40512 6.47875 6.52603 6.55270 6.66639 6.84255 6.85709 6.92607 7.04807 7.30426 7.47465 7.62907 7.76008 7.79835 7.90602 8.13931 8.23259 8.52945 9.04328 9.63967 11.11841 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030019 B = 0.003598 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.533175 B = 7781.283044 C = 8390.472004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.175 3.825 3 O -0.545 6.545 4 C 0.032 3.968 5 N -0.530 5.530 6 C 0.042 3.958 7 C -0.119 4.119 8 C -0.110 4.110 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.514 4.514 12 H 0.053 0.947 13 C 0.062 3.938 14 N -0.888 5.888 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.067 3.933 20 C -0.108 4.108 21 C -0.112 4.112 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.105 4.105 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.371 0.629 30 H 0.080 0.920 31 H 0.028 0.972 32 H 0.105 0.895 33 H 0.013 0.987 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.027 0.973 38 H 0.258 0.742 39 H 0.016 0.984 40 H 0.055 0.945 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -1.128 20.183 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.134 3.866 3 O -0.352 6.352 4 C -0.096 4.096 5 N -0.254 5.254 6 C -0.085 4.085 7 C -0.156 4.156 8 C -0.149 4.149 9 C 0.038 3.962 10 H 0.052 0.948 11 C -0.553 4.553 12 H 0.071 0.929 13 C -0.139 4.139 14 N -0.526 5.526 15 Si 0.717 3.283 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.060 4.060 20 C -0.109 4.109 21 C -0.130 4.130 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.142 4.142 25 C -0.123 4.123 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.219 0.781 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.122 0.878 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.046 0.954 38 H 0.068 0.932 39 H 0.034 0.966 40 H 0.074 0.926 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.955 -1.028 20.063 20.306 hybrid contribution 1.999 -0.481 -0.966 2.272 sum 4.955 -1.509 19.097 19.787 Atomic orbital electron populations 1.21681 0.90793 1.02657 1.03052 1.20060 0.95752 0.81086 0.89674 1.86580 1.26431 1.25995 1.96148 1.22785 0.96066 0.99571 0.91200 1.62095 1.56470 1.05350 1.01490 1.22648 0.97610 0.87510 1.00740 1.21696 0.99858 0.97695 0.96395 1.21640 0.98912 0.98501 0.95803 1.18635 0.95880 0.91844 0.89881 0.94836 1.21201 1.16173 1.26539 0.91369 0.92920 1.24933 0.94927 0.95151 0.98852 1.69906 1.23409 1.34568 1.24763 0.86593 0.78953 0.79115 0.83641 1.19906 1.21055 1.21129 1.22310 0.96385 0.97647 0.89678 1.20610 0.99611 0.94464 0.96251 1.21230 0.98836 0.94140 0.98751 1.21161 0.99737 0.99907 0.93158 1.21162 1.00512 0.94509 0.98047 1.21145 1.00021 0.94722 0.98312 1.21026 0.98650 1.00442 0.92140 0.91411 0.92983 0.89553 0.78082 0.90196 0.95437 0.87763 0.96865 0.92424 0.93848 0.89377 0.95437 0.93161 0.96580 0.92637 0.85449 0.86089 0.86346 0.86233 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 8.37 37.16 0.31 -1.34 16 2 C 0.17 2.21 0.81 -91.77 -0.07 2.13 16 3 O -0.55 -6.74 8.48 -35.23 -0.30 -7.04 16 4 C 0.03 0.47 4.03 -3.82 -0.02 0.46 16 5 N -0.53 -9.61 3.90 -234.67 -0.91 -10.53 16 6 C 0.04 0.75 3.98 -3.83 -0.02 0.74 16 7 C -0.12 -2.40 6.09 -26.65 -0.16 -2.56 16 8 C -0.11 -2.68 5.03 -26.62 -0.13 -2.81 16 9 C 0.06 1.43 2.26 -91.70 -0.21 1.22 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.51 -14.25 8.56 -34.44 -0.29 -14.55 16 12 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 13 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 14 N -0.89 -25.60 11.36 55.43 0.63 -24.97 16 15 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 C 0.07 1.43 4.69 -3.83 -0.02 1.41 16 20 C -0.11 -1.24 4.80 -104.62 -0.50 -1.75 16 21 C -0.11 -1.23 9.14 -39.58 -0.36 -1.59 16 22 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 25 C -0.10 -1.10 9.35 -39.59 -0.37 -1.47 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 1.32 6.35 -51.93 -0.33 0.99 16 29 H 0.37 3.70 9.04 46.93 0.42 4.13 16 30 H 0.08 1.12 6.03 -51.93 -0.31 0.81 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 1.73 4.11 -50.66 -0.21 1.52 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 41 H 0.13 1.35 5.99 -52.49 -0.31 1.04 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 45 H 0.13 1.26 7.48 -52.49 -0.39 0.87 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -29.37 343.95 -10.04 -39.41 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.49 Total: 4.66 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -3.13 Total: -23.13 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.28 Total: -35.50 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.30 Total: -7.04 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.37 -10.04 -39.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397853506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.906 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds