Wall clock time and date at job start Tue Mar 31 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47004 * 2 1 4 4 C 1.53004 * 109.47200 * 239.99923 * 2 1 3 5 5 N 1.46901 * 109.46748 * 54.52600 * 4 2 1 6 6 C 1.46844 * 110.99502 * 201.79139 * 5 4 2 7 7 C 1.53041 * 109.52292 * 174.16071 * 6 5 4 8 8 C 1.53121 * 109.27459 * 59.18193 * 7 6 5 9 9 C 1.53126 * 109.15994 * 302.34407 * 8 7 6 10 10 H 1.09000 * 109.53243 * 297.69452 * 9 8 7 11 11 C 1.50698 * 109.50015 * 177.59664 * 9 8 7 12 12 H 1.07999 * 120.00429 * 245.78688 * 11 9 8 13 13 C 1.37878 * 120.00046 * 65.79420 * 11 9 8 14 14 N 1.31516 * 119.99976 * 198.25688 * 13 11 9 15 15 Si 1.86799 * 120.00289 * 18.25303 * 13 11 9 16 16 H 1.48501 * 109.47264 * 179.97438 * 15 13 11 17 17 H 1.48504 * 109.46869 * 59.99941 * 15 13 11 18 18 H 1.48499 * 109.47216 * 300.00370 * 15 13 11 19 19 C 1.46844 * 110.99974 * 77.58825 * 5 4 2 20 20 C 1.50697 * 109.46846 * 119.99959 * 2 1 3 21 21 C 1.38235 * 120.00045 * 89.73247 * 20 2 1 22 22 C 1.38234 * 119.99821 * 179.78843 * 21 20 2 23 23 C 1.38234 * 120.00426 * 0.43213 * 22 21 20 24 24 C 1.38234 * 119.99503 * 359.81935 * 23 22 21 25 25 C 1.38230 * 120.00385 * 359.97344 * 24 23 22 26 26 H 1.09007 * 109.47157 * 184.30784 * 1 2 3 27 27 H 1.08997 * 109.47230 * 304.31153 * 1 2 3 28 28 H 1.09006 * 109.47223 * 64.31208 * 1 2 3 29 29 H 0.96698 * 113.99446 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.46961 * 294.52830 * 4 2 1 31 31 H 1.08992 * 109.46873 * 174.52299 * 4 2 1 32 32 H 1.09002 * 109.46676 * 294.17757 * 6 5 4 33 33 H 1.09000 * 109.46574 * 54.15979 * 6 5 4 34 34 H 1.08998 * 109.50402 * 179.11458 * 7 6 5 35 35 H 1.08998 * 109.50511 * 299.24387 * 7 6 5 36 36 H 1.09005 * 109.52176 * 182.43857 * 8 7 6 37 37 H 1.08994 * 109.52700 * 62.25267 * 8 7 6 38 38 H 0.97000 * 120.00107 * 354.94644 * 14 13 11 39 39 H 1.08997 * 109.46670 * 65.81692 * 19 5 4 40 40 H 1.09008 * 109.45329 * 305.84265 * 19 5 4 41 41 H 1.07998 * 119.99937 * 359.97438 * 21 20 2 42 42 H 1.08003 * 119.99614 * 180.27407 * 22 21 20 43 43 H 1.08000 * 120.00345 * 179.83529 * 23 22 21 44 44 H 1.08003 * 119.99824 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00497 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.4454 -0.1092 -2.4450 6 6 1.4739 -1.0389 -3.5814 7 6 0.7194 -0.4254 -4.7631 8 6 1.3778 0.9021 -5.1489 9 6 1.3786 1.8345 -3.9343 10 1 0.3516 2.0478 -3.6379 11 6 2.0778 3.1216 -4.2886 12 1 3.0082 3.3815 -3.8056 13 6 1.5296 3.9676 -5.2292 14 7 2.2766 4.8857 -5.8026 15 14 -0.2739 3.8097 -5.6894 16 1 -0.6142 4.8286 -6.7147 17 1 -1.1130 4.0228 -4.4828 18 1 -0.5284 2.4525 -6.2358 19 6 2.1141 1.1554 -2.7767 20 6 2.0322 -0.7104 1.2305 21 6 2.2573 -2.0739 1.1979 22 6 2.7222 -2.7248 2.3253 23 6 2.9535 -2.0138 3.4880 24 6 2.7235 -0.6511 3.5220 25 6 2.2627 0.0005 2.3934 26 1 -0.3634 -1.0248 0.0772 27 1 -0.3633 0.5793 0.8488 28 1 -0.3634 0.4455 -0.9261 29 1 2.9703 1.4236 0.0004 30 1 1.7589 -1.7733 -1.2016 31 1 3.1255 -0.6371 -1.2996 32 1 2.5078 -1.2285 -3.8697 33 1 0.9988 -1.9772 -3.2951 34 1 0.7541 -1.1089 -5.6114 35 1 -0.3182 -0.2482 -4.4799 36 1 0.8176 1.3637 -5.9621 37 1 2.4036 0.7204 -5.4694 38 1 3.1927 5.0166 -5.5120 39 1 3.1450 0.9555 -3.0687 40 1 2.1039 1.8108 -1.9057 41 1 2.0729 -2.6301 0.2907 42 1 2.9023 -3.7894 2.2985 43 1 3.3142 -2.5227 4.3696 44 1 2.9038 -0.0956 4.4305 45 1 2.0833 1.0652 2.4199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397853508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:03 Heat of formation + Delta-G solvation = -46.983677 kcal Electronic energy + Delta-G solvation = -23882.881167 eV Core-core repulsion = 20670.832414 eV Total energy + Delta-G solvation = -3212.048753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.11960 -39.68006 -37.92060 -35.49873 -34.07520 -32.91206 -31.83900 -31.73152 -30.14118 -27.55792 -26.49322 -24.58093 -23.70884 -23.02735 -22.50177 -21.01820 -20.38975 -19.62217 -18.54196 -17.33174 -16.71307 -16.41364 -16.21372 -15.78412 -15.52911 -15.23153 -15.17252 -14.90582 -14.51388 -14.26100 -14.14472 -13.98600 -13.66407 -13.56771 -13.22296 -13.11178 -12.87169 -12.70687 -12.40892 -12.25153 -12.22713 -12.10670 -11.73429 -11.68770 -11.63123 -11.37708 -11.06035 -10.94174 -10.40076 -10.29968 -9.81666 -9.67063 -9.12665 -8.72154 -6.31956 0.41588 0.50556 1.45804 1.54600 1.74044 2.50211 2.85764 2.96083 3.09613 3.31723 3.76413 3.88922 4.04267 4.15037 4.16054 4.17875 4.21651 4.29614 4.34193 4.46576 4.55148 4.64964 4.71342 4.74950 4.78069 4.84838 4.92725 4.99057 5.00162 5.04209 5.13914 5.16099 5.18062 5.26549 5.31463 5.45510 5.57292 5.58608 5.62953 5.67992 5.83544 5.97074 6.07376 6.11548 6.30218 6.37781 6.63070 6.76412 7.44497 8.66565 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026069 B = 0.004140 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.805350 B = 6761.270442 C = 7233.770464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.180 3.820 3 O -0.561 6.561 4 C 0.035 3.965 5 N -0.532 5.532 6 C 0.059 3.941 7 C -0.113 4.113 8 C -0.122 4.122 9 C 0.026 3.974 10 H 0.022 0.978 11 C -0.598 4.598 12 H 0.012 0.988 13 C -0.021 4.021 14 N -0.943 5.943 15 Si 1.086 2.914 16 H -0.291 1.291 17 H -0.269 1.269 18 H -0.241 1.241 19 C 0.078 3.922 20 C -0.119 4.119 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.128 4.128 25 C -0.119 4.119 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.377 0.623 30 H 0.103 0.897 31 H 0.030 0.970 32 H 0.020 0.980 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.029 0.971 38 H 0.249 0.751 39 H -0.006 1.006 40 H 0.084 0.916 41 H 0.135 0.865 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.137 0.863 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -19.447 16.479 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.139 3.861 3 O -0.367 6.367 4 C -0.093 4.093 5 N -0.256 5.256 6 C -0.068 4.068 7 C -0.150 4.150 8 C -0.160 4.160 9 C 0.007 3.993 10 H 0.040 0.960 11 C -0.636 4.636 12 H 0.030 0.970 13 C -0.218 4.218 14 N -0.580 5.580 15 Si 0.908 3.092 16 H -0.218 1.218 17 H -0.194 1.194 18 H -0.165 1.165 19 C -0.049 4.049 20 C -0.120 4.120 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.137 4.137 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.226 0.774 30 H 0.121 0.879 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.012 0.988 40 H 0.102 0.898 41 H 0.153 0.847 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.155 0.845 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.282 -18.637 15.569 24.659 hybrid contribution 3.405 0.048 0.645 3.466 sum -0.877 -18.589 16.214 24.682 Atomic orbital electron populations 1.21567 0.91470 1.02470 1.02251 1.20020 0.95402 0.80906 0.89728 1.86616 1.27005 1.26864 1.96239 1.22829 0.96405 0.99587 0.90452 1.61914 1.55142 1.04213 1.04288 1.22146 0.98257 0.95612 0.90814 1.21622 0.99833 0.96026 0.97561 1.21970 0.98692 0.96294 0.99051 1.18912 0.95615 0.92526 0.92242 0.95982 1.22230 1.08212 1.06949 1.26226 0.96972 1.27175 1.08576 0.93051 0.93030 1.71001 1.09281 1.38546 1.39168 0.83551 0.70816 0.77888 0.76994 1.21780 1.19447 1.16505 1.22135 0.92876 0.90776 0.99112 1.20525 1.00704 0.95009 0.95743 1.21317 0.99488 0.93549 0.99619 1.21467 0.98939 1.01087 0.92753 1.21511 0.99612 0.94257 0.98985 1.21418 0.99321 0.95415 0.98466 1.21114 0.99343 1.00415 0.92840 0.90097 0.93256 0.91747 0.77429 0.87860 0.95212 0.96149 0.88389 0.90252 0.91417 0.93520 0.95183 0.94170 0.98755 0.89774 0.84681 0.83755 0.83851 0.84521 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 8.68 71.98 0.63 -2.54 16 2 C 0.18 4.65 1.00 -11.54 -0.01 4.64 16 3 O -0.56 -17.15 9.15 -148.98 -1.36 -18.51 16 4 C 0.04 0.91 3.82 86.30 0.33 1.24 16 5 N -0.53 -17.23 3.49 -896.37 -3.13 -20.37 16 6 C 0.06 1.72 5.42 86.33 0.47 2.19 16 7 C -0.11 -3.66 6.09 30.65 0.19 -3.47 16 8 C -0.12 -5.29 4.97 30.68 0.15 -5.14 16 9 C 0.03 1.28 1.84 -11.49 -0.02 1.26 16 10 H 0.02 1.10 6.78 -2.39 -0.02 1.08 16 11 C -0.60 -35.40 8.82 25.60 0.23 -35.17 16 12 H 0.01 0.78 7.99 -2.91 -0.02 0.76 16 13 C -0.02 -1.27 5.34 84.65 0.45 -0.82 16 14 N -0.94 -61.21 13.70 21.45 0.29 -60.92 16 15 Si 1.09 52.25 26.42 68.60 1.81 54.06 16 16 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.24 -10.25 5.59 99.48 0.56 -9.69 16 19 C 0.08 3.29 4.43 86.33 0.38 3.67 16 20 C -0.12 -2.63 4.80 -19.87 -0.10 -2.73 16 21 C -0.12 -2.25 9.14 22.27 0.20 -2.05 16 22 C -0.12 -1.95 10.05 22.27 0.22 -1.72 16 23 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 24 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 25 C -0.12 -2.60 9.35 22.27 0.21 -2.39 16 26 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 2.01 7.31 -2.38 -0.02 1.99 16 29 H 0.38 10.02 8.97 -74.06 -0.66 9.35 16 30 H 0.10 2.10 5.81 -2.39 -0.01 2.09 16 31 H 0.03 0.81 7.97 -2.39 -0.02 0.79 16 32 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 2.17 7.92 -2.39 -0.02 2.15 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 2.11 4.90 -2.38 -0.01 2.10 16 37 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.25 16.42 8.73 -92.71 -0.81 15.61 16 39 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.08 3.68 5.22 -2.38 -0.01 3.66 16 41 H 0.14 2.09 6.05 -2.91 -0.02 2.07 16 42 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 43 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 44 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 45 H 0.12 2.74 7.48 -2.91 -0.02 2.72 16 Total: -1.00 -70.58 342.70 1.50 -69.07 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.12 Total: 23.47 kcal Atomic # 6 Polarization: -50.59 SS G_CDS: 3.78 Total: -46.81 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -2.84 Total: -81.29 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -1.36 Total: -18.51 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 1.81 Total: 54.06 kcal Total: -70.58 1.50 -69.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397853508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.091 kcal (2) G-P(sol) polarization free energy of solvation -70.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds