Wall clock time and date at job start Tue Mar 31 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47221 * 2 1 4 4 H 1.08997 * 109.46618 * 55.00223 * 3 2 1 5 5 C 1.53002 * 109.47120 * 295.00692 * 3 2 1 6 6 C 1.52996 * 109.47095 * 175.00110 * 3 2 1 7 7 N 1.46495 * 109.47168 * 185.00121 * 6 3 2 8 8 C 1.34779 * 120.00324 * 180.02562 * 7 6 3 9 9 O 1.21278 * 119.99703 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.52996 * 109.47044 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47493 * 305.98058 * 11 10 8 13 13 C 1.50699 * 109.46802 * 65.98063 * 11 10 8 14 14 H 1.07996 * 120.00319 * 26.91275 * 13 11 10 15 15 C 1.37882 * 120.00193 * 206.90875 * 13 11 10 16 16 N 1.31519 * 119.99874 * 353.28371 * 15 13 11 17 17 Si 1.86801 * 120.00294 * 173.55447 * 15 13 11 18 18 H 1.48497 * 109.47144 * 269.72519 * 17 15 13 19 19 H 1.48498 * 109.46829 * 29.72826 * 17 15 13 20 20 H 1.48507 * 109.46835 * 149.72714 * 17 15 13 21 21 C 1.50699 * 109.47289 * 185.97873 * 11 10 8 22 22 C 1.38237 * 119.99863 * 294.44402 * 21 11 10 23 23 C 1.38237 * 119.99818 * 179.78435 * 22 21 11 24 24 C 1.38229 * 120.00057 * 0.44553 * 23 22 21 25 25 C 1.38236 * 119.99936 * 359.80698 * 24 23 22 26 26 C 1.38230 * 120.00146 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47567 * 59.99212 * 1 2 3 28 28 H 1.08993 * 109.47549 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46895 * 299.99513 * 1 2 3 30 30 H 1.09003 * 109.46745 * 240.01004 * 2 1 3 31 31 H 1.08992 * 109.47522 * 120.00463 * 2 1 3 32 32 H 1.08999 * 109.47341 * 60.00141 * 5 3 2 33 33 H 1.09007 * 109.46642 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.46992 * 299.99302 * 5 3 2 35 35 H 1.09006 * 109.46938 * 65.00592 * 6 3 2 36 36 H 1.08995 * 109.47200 * 305.00545 * 6 3 2 37 37 H 0.97006 * 119.99754 * 0.02562 * 7 6 3 38 38 H 1.09006 * 109.46831 * 60.00366 * 10 8 7 39 39 H 1.08995 * 109.47505 * 300.00197 * 10 8 7 40 40 H 0.97005 * 119.99795 * 354.69035 * 16 15 13 41 41 H 1.07999 * 119.99895 * 359.97438 * 22 21 11 42 42 H 1.08004 * 120.00271 * 180.27444 * 23 22 21 43 43 H 1.08007 * 120.00590 * 179.83396 * 24 23 22 44 44 H 1.08003 * 120.00202 * 180.02562 * 25 24 23 45 45 H 1.08004 * 120.00248 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 7 4.0433 2.8237 0.2458 8 6 5.3625 3.0712 0.3684 9 8 6.1535 2.1520 0.3788 10 6 5.8547 4.4903 0.4914 11 6 7.3795 4.4920 0.6172 12 1 7.6770 3.8417 1.4397 13 6 7.9899 3.9902 -0.6660 14 1 7.4584 4.1072 -1.5988 15 6 9.2271 3.3818 -0.6492 16 7 9.9325 3.3567 0.4605 17 14 9.9047 2.5998 -2.2045 18 1 9.4876 1.1759 -2.2648 19 1 9.3777 3.3207 -3.3910 20 1 11.3875 2.6813 -2.1939 21 6 7.8596 5.8948 0.8869 22 6 7.7002 6.8765 -0.0731 23 6 8.1367 8.1643 0.1761 24 6 8.7408 8.4682 1.3817 25 6 8.9049 7.4852 2.3397 26 6 8.4644 6.1986 2.0923 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.5488 2.1254 -1.3968 33 1 1.9982 3.1545 -1.3070 34 1 2.0698 1.5877 -2.1491 35 1 4.0029 0.9836 -0.7598 36 1 3.8571 0.8800 1.0112 37 1 3.4106 3.5590 0.2371 38 1 5.4169 4.9512 1.3769 39 1 5.5622 5.0544 -0.3942 40 1 9.6184 3.8318 1.2458 41 1 7.2320 6.6381 -1.0167 42 1 8.0082 8.9324 -0.5723 43 1 9.0842 9.4737 1.5754 44 1 9.3765 7.7227 3.2818 45 1 8.5930 5.4305 2.8406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421597913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:13 Heat of formation + Delta-G solvation = -44.547621 kcal Electronic energy + Delta-G solvation = -22894.464699 eV Core-core repulsion = 19682.521582 eV Total energy + Delta-G solvation = -3211.943117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.25820 -38.37021 -36.99103 -34.29838 -33.41521 -31.31359 -30.10557 -29.95972 -28.84727 -26.76592 -24.95932 -23.38347 -22.54744 -21.64416 -20.37554 -20.10939 -19.30436 -16.93891 -16.31657 -15.91751 -15.61673 -15.33801 -14.79978 -14.32143 -14.23210 -13.98680 -13.64797 -13.56668 -13.20677 -12.84758 -12.66092 -12.38249 -12.33490 -12.16511 -12.07015 -11.82276 -11.60695 -11.40097 -10.94427 -10.87331 -10.77824 -10.69602 -10.68080 -10.41762 -10.10663 -10.03205 -9.67255 -8.99502 -8.60984 -8.52740 -8.24778 -8.12979 -7.62288 -6.19884 -3.88523 2.20005 2.25681 3.51233 3.53685 3.57799 3.70332 3.71615 4.62242 4.65885 4.69512 4.70439 4.78831 5.14739 5.31436 5.33928 5.43645 5.49521 5.60413 5.64212 5.64585 5.72611 5.77425 5.79726 5.81699 5.87326 5.92014 6.02132 6.03862 6.11318 6.17981 6.22062 6.27403 6.32942 6.43787 6.71059 6.80378 6.94011 6.94596 7.22393 7.24315 7.39605 7.74955 7.87022 8.08378 8.25846 8.54803 8.99507 9.07323 9.80271 11.19702 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.004262 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.889544 B = 6567.627341 C = 7796.162823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.103 4.103 4 H 0.074 0.926 5 C -0.149 4.149 6 C 0.126 3.874 7 N -0.749 5.749 8 C 0.511 3.489 9 O -0.500 6.500 10 C -0.116 4.116 11 C 0.072 3.928 12 H 0.049 0.951 13 C -0.566 4.566 14 H 0.045 0.955 15 C 0.032 3.968 16 N -0.908 5.908 17 Si 1.063 2.937 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.288 1.288 21 C -0.032 4.032 22 C -0.107 4.107 23 C -0.130 4.130 24 C -0.153 4.153 25 C -0.125 4.125 26 C -0.130 4.130 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.391 0.609 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.271 0.729 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.303 1.804 0.329 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.122 4.122 4 H 0.092 0.908 5 C -0.206 4.206 6 C 0.002 3.998 7 N -0.405 5.405 8 C 0.298 3.702 9 O -0.372 6.372 10 C -0.157 4.157 11 C 0.053 3.947 12 H 0.067 0.933 13 C -0.604 4.604 14 H 0.063 0.937 15 C -0.174 4.174 16 N -0.543 5.543 17 Si 0.893 3.107 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.214 1.214 21 C -0.033 4.033 22 C -0.125 4.125 23 C -0.148 4.148 24 C -0.171 4.171 25 C -0.143 4.143 26 C -0.149 4.149 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.225 0.775 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.395 0.216 -0.262 14.399 hybrid contribution -1.492 1.286 0.495 2.031 sum -15.887 1.502 0.233 15.960 Atomic orbital electron populations 1.21807 0.95774 1.01506 1.01843 1.21501 0.95858 0.95774 1.02492 1.21397 0.94930 0.96973 0.98855 0.90802 1.21896 1.01017 1.00667 0.97033 1.21254 0.92480 0.84322 1.01780 1.46189 1.08143 1.07895 1.78224 1.20850 0.80974 0.92534 0.75856 1.90748 1.54005 1.46230 1.46187 1.21656 1.00184 0.92435 1.01383 1.17866 0.88469 0.88523 0.99833 0.93266 1.21556 1.05238 1.41570 0.91992 0.93664 1.25573 0.93952 0.95225 1.02625 1.70700 1.40100 1.40890 1.02595 0.83639 0.75875 0.76536 0.74670 1.21482 1.21727 1.21358 1.20860 0.94155 0.96967 0.91316 1.20928 1.00470 0.92126 0.98952 1.21015 1.00237 0.96727 0.96856 1.20823 1.02783 0.98508 0.94965 1.20964 1.00771 0.93765 0.98790 1.21078 1.00462 0.95811 0.97507 0.92489 0.92848 0.92832 0.91643 0.91710 0.92494 0.92537 0.92432 0.91924 0.92167 0.77529 0.91735 0.90337 0.91760 0.86687 0.87455 0.87589 0.87456 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.76 16 2 C -0.12 -1.04 5.40 -26.73 -0.14 -1.19 16 3 C -0.10 -1.00 2.42 -90.62 -0.22 -1.22 16 4 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 5 C -0.15 -1.36 8.82 37.16 0.33 -1.03 16 6 C 0.13 1.72 5.06 -4.05 -0.02 1.70 16 7 N -0.75 -11.22 5.28 -60.30 -0.32 -11.54 16 8 C 0.51 10.36 7.58 -10.99 -0.08 10.27 16 9 O -0.50 -12.77 15.02 5.56 0.08 -12.69 16 10 C -0.12 -2.28 4.95 -27.89 -0.14 -2.42 16 11 C 0.07 1.75 1.23 -92.93 -0.11 1.64 16 12 H 0.05 1.35 6.59 -51.93 -0.34 1.01 16 13 C -0.57 -15.59 6.35 -34.44 -0.22 -15.81 16 14 H 0.05 1.25 7.82 -52.49 -0.41 0.84 16 15 C 0.03 0.92 5.45 -17.82 -0.10 0.83 16 16 N -0.91 -28.05 13.56 55.43 0.75 -27.29 16 17 Si 1.06 26.66 29.91 -169.99 -5.08 21.58 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 21 C -0.03 -0.72 4.53 -104.62 -0.47 -1.20 16 22 C -0.11 -2.20 8.90 -39.58 -0.35 -2.55 16 23 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 24 C -0.15 -2.67 10.05 -39.59 -0.40 -3.07 16 25 C -0.12 -2.31 10.05 -39.59 -0.40 -2.71 16 26 C -0.13 -2.75 9.18 -39.59 -0.36 -3.11 16 27 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 33 H 0.06 0.52 7.18 -51.92 -0.37 0.15 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.39 4.63 7.66 -40.82 -0.31 4.32 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.44 7.97 -51.93 -0.41 1.02 16 40 H 0.27 8.24 6.24 -40.82 -0.25 7.99 16 41 H 0.12 2.32 7.85 -52.49 -0.41 1.91 16 42 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 43 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 44 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 45 H 0.11 2.30 7.95 -52.48 -0.42 1.88 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -33.42 364.62 -9.29 -42.71 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.49 Total: 5.14 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -2.73 Total: -23.40 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.43 Total: -38.84 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 26.66 SS G_CDS: -5.08 Total: 21.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.42 -9.29 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421597913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.840 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds