Wall clock time and date at job start Tue Mar 31 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47221 * 2 1 4 4 H 1.08997 * 109.46618 * 55.00223 * 3 2 1 5 5 C 1.53002 * 109.47120 * 295.00692 * 3 2 1 6 6 C 1.52996 * 109.47095 * 175.00110 * 3 2 1 7 7 N 1.46495 * 109.47168 * 185.00121 * 6 3 2 8 8 C 1.34779 * 120.00324 * 180.02562 * 7 6 3 9 9 O 1.21278 * 119.99703 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.52996 * 109.47044 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47493 * 305.98058 * 11 10 8 13 13 C 1.50699 * 109.46802 * 65.98063 * 11 10 8 14 14 H 1.07996 * 120.00319 * 26.91275 * 13 11 10 15 15 C 1.37882 * 120.00193 * 206.90875 * 13 11 10 16 16 N 1.31519 * 119.99874 * 353.28371 * 15 13 11 17 17 Si 1.86801 * 120.00294 * 173.55447 * 15 13 11 18 18 H 1.48497 * 109.47144 * 269.72519 * 17 15 13 19 19 H 1.48498 * 109.46829 * 29.72826 * 17 15 13 20 20 H 1.48507 * 109.46835 * 149.72714 * 17 15 13 21 21 C 1.50699 * 109.47289 * 185.97873 * 11 10 8 22 22 C 1.38237 * 119.99863 * 294.44402 * 21 11 10 23 23 C 1.38237 * 119.99818 * 179.78435 * 22 21 11 24 24 C 1.38229 * 120.00057 * 0.44553 * 23 22 21 25 25 C 1.38236 * 119.99936 * 359.80698 * 24 23 22 26 26 C 1.38230 * 120.00146 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47567 * 59.99212 * 1 2 3 28 28 H 1.08993 * 109.47549 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46895 * 299.99513 * 1 2 3 30 30 H 1.09003 * 109.46745 * 240.01004 * 2 1 3 31 31 H 1.08992 * 109.47522 * 120.00463 * 2 1 3 32 32 H 1.08999 * 109.47341 * 60.00141 * 5 3 2 33 33 H 1.09007 * 109.46642 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.46992 * 299.99302 * 5 3 2 35 35 H 1.09006 * 109.46938 * 65.00592 * 6 3 2 36 36 H 1.08995 * 109.47200 * 305.00545 * 6 3 2 37 37 H 0.97006 * 119.99754 * 0.02562 * 7 6 3 38 38 H 1.09006 * 109.46831 * 60.00366 * 10 8 7 39 39 H 1.08995 * 109.47505 * 300.00197 * 10 8 7 40 40 H 0.97005 * 119.99795 * 354.69035 * 16 15 13 41 41 H 1.07999 * 119.99895 * 359.97438 * 22 21 11 42 42 H 1.08004 * 120.00271 * 180.27444 * 23 22 21 43 43 H 1.08007 * 120.00590 * 179.83396 * 24 23 22 44 44 H 1.08003 * 120.00202 * 180.02562 * 25 24 23 45 45 H 1.08004 * 120.00248 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 7 4.0433 2.8237 0.2458 8 6 5.3625 3.0712 0.3684 9 8 6.1535 2.1520 0.3788 10 6 5.8547 4.4903 0.4914 11 6 7.3795 4.4920 0.6172 12 1 7.6770 3.8417 1.4397 13 6 7.9899 3.9902 -0.6660 14 1 7.4584 4.1072 -1.5988 15 6 9.2271 3.3818 -0.6492 16 7 9.9325 3.3567 0.4605 17 14 9.9047 2.5998 -2.2045 18 1 9.4876 1.1759 -2.2648 19 1 9.3777 3.3207 -3.3910 20 1 11.3875 2.6813 -2.1939 21 6 7.8596 5.8948 0.8869 22 6 7.7002 6.8765 -0.0731 23 6 8.1367 8.1643 0.1761 24 6 8.7408 8.4682 1.3817 25 6 8.9049 7.4852 2.3397 26 6 8.4644 6.1986 2.0923 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.5488 2.1254 -1.3968 33 1 1.9982 3.1545 -1.3070 34 1 2.0698 1.5877 -2.1491 35 1 4.0029 0.9836 -0.7598 36 1 3.8571 0.8800 1.0112 37 1 3.4106 3.5590 0.2371 38 1 5.4169 4.9512 1.3769 39 1 5.5622 5.0544 -0.3942 40 1 9.6184 3.8318 1.2458 41 1 7.2320 6.6381 -1.0167 42 1 8.0082 8.9324 -0.5723 43 1 9.0842 9.4737 1.5754 44 1 9.3765 7.7227 3.2818 45 1 8.5930 5.4305 2.8406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421597913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:13 Heat of formation + Delta-G solvation = -64.079613 kcal Electronic energy + Delta-G solvation = -22895.311670 eV Core-core repulsion = 19682.521582 eV Total energy + Delta-G solvation = -3212.790088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83767 -39.87532 -38.07147 -36.10575 -34.75643 -33.27107 -31.61344 -31.03940 -30.14953 -27.93489 -26.68767 -24.86489 -23.80122 -23.17375 -21.80066 -21.39497 -20.69259 -18.84629 -17.96658 -17.29214 -16.89951 -16.70483 -16.06155 -15.70050 -15.66880 -15.61301 -15.18652 -14.73427 -14.58850 -14.28805 -14.05294 -13.94651 -13.76524 -13.45748 -13.18434 -12.93795 -12.86736 -12.68472 -12.63723 -12.34673 -12.06096 -11.95806 -11.79963 -11.67922 -11.59219 -11.50969 -11.46187 -10.76563 -10.57685 -10.36473 -9.96729 -9.64495 -9.27353 -8.44964 -6.11626 0.67486 0.73466 1.47156 1.57528 1.71594 1.89301 2.36415 2.61529 3.10560 3.36055 3.77448 3.90217 3.98645 4.11972 4.13355 4.28270 4.29708 4.40639 4.44258 4.48669 4.53296 4.61628 4.65623 4.73937 4.78594 4.83223 4.86414 4.88474 5.07834 5.08945 5.15392 5.19312 5.21380 5.23447 5.40499 5.42878 5.46000 5.51673 5.61858 5.74390 5.81976 5.94697 6.23883 6.30904 6.40449 6.72718 6.78397 7.52900 7.63652 8.95432 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.004262 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.889544 B = 6567.627341 C = 7796.162823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.091 4.091 4 H 0.088 0.912 5 C -0.148 4.148 6 C 0.124 3.876 7 N -0.724 5.724 8 C 0.509 3.491 9 O -0.564 6.564 10 C -0.110 4.110 11 C 0.073 3.927 12 H 0.003 0.997 13 C -0.556 4.556 14 H 0.039 0.961 15 C -0.026 4.026 16 N -0.945 5.945 17 Si 1.099 2.901 18 H -0.291 1.291 19 H -0.266 1.266 20 H -0.286 1.286 21 C -0.056 4.056 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.144 4.144 25 C -0.125 4.125 26 C -0.153 4.153 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.411 0.589 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.261 0.739 41 H 0.114 0.886 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.270 4.329 -0.408 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.109 4.109 4 H 0.107 0.893 5 C -0.205 4.205 6 C 0.000 4.000 7 N -0.379 5.379 8 C 0.296 3.704 9 O -0.441 6.441 10 C -0.151 4.151 11 C 0.054 3.946 12 H 0.021 0.979 13 C -0.594 4.594 14 H 0.057 0.943 15 C -0.224 4.224 16 N -0.583 5.583 17 Si 0.924 3.076 18 H -0.218 1.218 19 H -0.191 1.191 20 H -0.212 1.212 21 C -0.057 4.057 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.162 4.162 25 C -0.143 4.143 26 C -0.172 4.172 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.248 0.752 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.153 0.847 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.445 2.781 -1.012 16.709 hybrid contribution -0.978 0.571 0.785 1.378 sum -17.423 3.352 -0.227 17.744 Atomic orbital electron populations 1.21778 0.94119 1.02176 1.02447 1.21512 0.97221 0.94875 1.02121 1.21338 0.91490 0.98111 0.99984 0.89343 1.21903 1.02348 1.00280 0.95990 1.21373 0.95375 0.82985 1.00244 1.45933 1.06755 1.09408 1.75837 1.21025 0.82140 0.92117 0.75126 1.90727 1.56033 1.47807 1.49539 1.21563 0.97383 0.92639 1.03468 1.17692 0.91216 0.89113 0.96552 0.97883 1.21813 1.04398 1.40170 0.92980 0.94295 1.26733 0.95149 0.96235 1.04273 1.70786 1.41191 1.43146 1.03193 0.83185 0.75534 0.75944 0.72964 1.21773 1.19113 1.21199 1.20622 0.95934 0.96249 0.92848 1.21011 1.01481 0.93105 0.98448 1.21411 0.98659 0.96234 0.97920 1.21314 1.00945 0.99979 0.93931 1.21302 0.99924 0.92662 1.00408 1.21132 1.01639 0.97114 0.97285 0.91814 0.92254 0.92230 0.92148 0.92143 0.90403 0.92508 0.93389 0.93878 0.93530 0.75183 0.88942 0.88494 0.92883 0.86819 0.83896 0.83501 0.84683 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.67 71.98 0.70 -1.15 16 2 C -0.12 -1.96 5.40 30.60 0.17 -1.80 16 3 C -0.09 -1.63 2.42 -10.79 -0.03 -1.66 16 4 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 5 C -0.15 -2.39 8.82 71.98 0.63 -1.76 16 6 C 0.12 3.42 5.06 86.38 0.44 3.86 16 7 N -0.72 -21.42 5.28 -463.08 -2.45 -23.87 16 8 C 0.51 21.09 7.58 87.66 0.66 21.76 16 9 O -0.56 -30.38 15.02 -3.02 -0.05 -30.42 16 10 C -0.11 -4.37 4.95 29.85 0.15 -4.22 16 11 C 0.07 3.70 1.23 -12.29 -0.02 3.69 16 12 H 0.00 0.17 6.59 -2.39 -0.02 0.16 16 13 C -0.56 -31.57 6.35 25.60 0.16 -31.41 16 14 H 0.04 2.20 7.82 -2.91 -0.02 2.17 16 15 C -0.03 -1.55 5.45 84.66 0.46 -1.09 16 16 N -0.94 -61.22 13.56 21.45 0.29 -60.93 16 17 Si 1.10 55.03 29.91 68.60 2.05 57.09 16 18 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 21 C -0.06 -2.53 4.53 -19.87 -0.09 -2.62 16 22 C -0.12 -4.89 8.90 22.27 0.20 -4.70 16 23 C -0.12 -4.09 10.05 22.27 0.22 -3.87 16 24 C -0.14 -4.47 10.05 22.27 0.22 -4.24 16 25 C -0.13 -4.37 10.05 22.27 0.22 -4.15 16 26 C -0.15 -6.57 9.18 22.27 0.20 -6.37 16 27 H 0.06 0.72 6.56 -2.39 -0.02 0.70 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 0.96 6.57 -2.39 -0.02 0.95 16 33 H 0.06 0.91 7.18 -2.38 -0.02 0.89 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.41 8.95 7.66 -92.70 -0.71 8.24 16 38 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 39 H 0.10 3.46 7.97 -2.39 -0.02 3.44 16 40 H 0.26 16.88 6.24 -92.70 -0.58 16.30 16 41 H 0.11 4.47 7.85 -2.91 -0.02 4.44 16 42 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 43 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 44 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 45 H 0.09 4.22 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -77.29 364.62 4.60 -72.70 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.44 Total: 25.17 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 4.31 Total: -39.72 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -2.16 Total: -84.80 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.05 Total: -30.42 kcal Atomic # 14 Polarization: 55.03 SS G_CDS: 2.05 Total: 57.09 kcal Total: -77.29 4.60 -72.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421597913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.617 kcal (2) G-P(sol) polarization free energy of solvation -77.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds