Wall clock time and date at job start Tue Mar 31 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47355 * 2 1 4 4 H 1.08997 * 109.46562 * 305.00093 * 3 2 1 5 5 C 1.52999 * 109.46950 * 64.99825 * 3 2 1 6 6 C 1.52996 * 109.47263 * 185.00371 * 3 2 1 7 7 N 1.46501 * 109.47208 * 174.99897 * 6 3 2 8 8 C 1.34771 * 119.99954 * 180.27139 * 7 6 3 9 9 O 1.21284 * 120.00088 * 359.72497 * 8 7 6 10 10 C 1.50700 * 120.00052 * 179.72392 * 8 7 6 11 11 C 1.52999 * 109.47123 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47148 * 54.99952 * 11 10 8 13 13 C 1.50699 * 109.47348 * 294.99894 * 11 10 8 14 14 H 1.08001 * 120.00176 * 325.13220 * 13 11 10 15 15 C 1.37878 * 120.00129 * 145.12786 * 13 11 10 16 16 N 1.31510 * 119.99812 * 184.99385 * 15 13 11 17 17 Si 1.86804 * 119.99881 * 4.98903 * 15 13 11 18 18 H 1.48497 * 109.46990 * 84.72851 * 17 15 13 19 19 H 1.48494 * 109.46845 * 204.73066 * 17 15 13 20 20 H 1.48493 * 109.47002 * 324.73078 * 17 15 13 21 21 C 1.50703 * 109.47004 * 174.99919 * 11 10 8 22 22 C 1.38246 * 119.99828 * 64.69478 * 21 11 10 23 23 C 1.38234 * 119.99671 * 179.80872 * 22 21 11 24 24 C 1.38236 * 120.00124 * 0.39994 * 23 22 21 25 25 C 1.38238 * 119.99812 * 359.85114 * 24 23 22 26 26 C 1.38229 * 120.00270 * 244.96403 * 21 11 10 27 27 H 1.09001 * 109.47240 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47082 * 300.00016 * 1 2 3 29 29 H 1.08992 * 109.47045 * 60.00175 * 1 2 3 30 30 H 1.09004 * 109.47340 * 239.99627 * 2 1 3 31 31 H 1.08998 * 109.47309 * 120.00193 * 2 1 3 32 32 H 1.08993 * 109.47231 * 300.00059 * 5 3 2 33 33 H 1.08998 * 109.47244 * 60.00148 * 5 3 2 34 34 H 1.09001 * 109.46996 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47716 * 54.99393 * 6 3 2 36 36 H 1.09010 * 109.47003 * 294.99695 * 6 3 2 37 37 H 0.97001 * 119.99683 * 359.97438 * 7 6 3 38 38 H 1.09001 * 109.46940 * 300.00351 * 10 8 7 39 39 H 1.09004 * 109.47032 * 60.00077 * 10 8 7 40 40 H 0.97010 * 119.99770 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.99588 * 359.97438 * 22 21 11 42 42 H 1.08000 * 119.99656 * 180.22783 * 23 22 21 43 43 H 1.07994 * 120.00018 * 179.83427 * 24 23 22 44 44 H 1.08007 * 119.99700 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.99978 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4443 -0.1258 7 7 4.0433 2.8238 -0.2459 8 6 5.3619 3.0708 -0.3746 9 8 6.1529 2.1515 -0.3860 10 6 5.8536 4.4894 -0.5044 11 6 7.3779 4.4908 -0.6363 12 1 7.6712 3.8513 -1.4689 13 6 7.9929 3.9708 0.6374 14 1 7.5295 4.1875 1.5886 15 6 9.1471 3.2181 0.5885 16 7 9.6295 2.6820 1.6882 17 14 10.0254 2.9598 -1.0398 18 1 10.9268 4.1100 -1.3038 19 1 10.8236 1.7092 -0.9786 20 1 9.0240 2.8551 -2.1312 21 6 7.8589 5.8965 -0.8890 22 6 7.6887 6.8696 0.0781 23 6 8.1335 8.1580 -0.1521 24 6 8.7411 8.4754 -1.3525 25 6 8.9066 7.5035 -2.3215 26 6 8.4654 6.2142 -2.0898 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.5491 2.1252 1.3969 33 1 2.0699 1.5875 2.1492 34 1 1.9983 3.1543 1.3072 35 1 3.8571 0.8799 -1.0114 36 1 4.0031 0.9835 0.7596 37 1 3.4107 3.5590 -0.2371 38 1 5.4122 4.9474 -1.3896 39 1 5.5646 5.0565 0.3805 40 1 10.4414 2.1522 1.6537 41 1 7.2106 6.6225 1.0145 42 1 8.0038 8.9174 0.6049 43 1 9.0861 9.4826 -1.5334 44 1 9.3810 7.7516 -3.2596 45 1 8.5949 5.4549 -2.8469 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421597914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:16 Heat of formation + Delta-G solvation = -37.470070 kcal Electronic energy + Delta-G solvation = -22922.153707 eV Core-core repulsion = 19710.517495 eV Total energy + Delta-G solvation = -3211.636212 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.25387 -38.43587 -36.96366 -34.13463 -33.37401 -31.63504 -30.21576 -29.96562 -28.88684 -26.90628 -25.57636 -23.33562 -22.39795 -21.82079 -20.33655 -20.00998 -19.02925 -16.92452 -16.53276 -15.96316 -15.62590 -15.25032 -14.70392 -14.57027 -14.21283 -14.06706 -13.83536 -13.44011 -13.20252 -12.71504 -12.69853 -12.53548 -12.33817 -12.14327 -12.12696 -11.86436 -11.83676 -11.47369 -11.07418 -10.90328 -10.76424 -10.74303 -10.67792 -10.48936 -10.33663 -9.83291 -9.57785 -9.05112 -8.90588 -8.50600 -8.38500 -8.22591 -7.80711 -5.94901 -3.91205 2.08903 2.14831 3.44036 3.48300 3.49488 3.56191 3.74700 4.52797 4.59237 4.69863 4.73837 4.82252 5.18203 5.31398 5.35303 5.38956 5.51399 5.51787 5.55585 5.65447 5.69074 5.75438 5.83522 5.85299 5.90808 5.95437 5.97821 6.03892 6.07419 6.11497 6.24425 6.25628 6.31854 6.34142 6.64327 6.70822 6.84340 6.97671 7.06628 7.13962 7.27082 7.60322 7.74093 7.85219 8.12290 8.56598 9.03676 9.10441 9.69885 11.18450 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016578 B = 0.004223 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.543131 B = 6629.504376 C = 7589.980180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.102 4.102 4 H 0.073 0.927 5 C -0.149 4.149 6 C 0.126 3.874 7 N -0.748 5.748 8 C 0.512 3.488 9 O -0.500 6.500 10 C -0.115 4.115 11 C 0.046 3.954 12 H 0.057 0.943 13 C -0.484 4.484 14 H 0.071 0.929 15 C 0.087 3.913 16 N -0.899 5.899 17 Si 0.870 3.130 18 H -0.277 1.277 19 H -0.292 1.292 20 H -0.261 1.261 21 C -0.039 4.039 22 C -0.102 4.102 23 C -0.126 4.126 24 C -0.150 4.150 25 C -0.124 4.124 26 C -0.141 4.141 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.392 0.608 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.261 0.739 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.516 3.232 -5.218 16.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.121 4.121 4 H 0.092 0.908 5 C -0.206 4.206 6 C 0.002 3.998 7 N -0.404 5.404 8 C 0.298 3.702 9 O -0.372 6.372 10 C -0.156 4.156 11 C 0.027 3.973 12 H 0.076 0.924 13 C -0.521 4.521 14 H 0.089 0.911 15 C -0.116 4.116 16 N -0.537 5.537 17 Si 0.699 3.301 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.187 1.187 21 C -0.040 4.040 22 C -0.120 4.120 23 C -0.144 4.144 24 C -0.168 4.168 25 C -0.142 4.142 26 C -0.159 4.159 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.225 0.775 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.734 2.404 -5.137 15.788 hybrid contribution 0.403 0.162 -0.696 0.821 sum -14.331 2.566 -5.834 15.684 Atomic orbital electron populations 1.21806 0.95805 1.01478 1.01831 1.21503 0.95827 0.95821 1.02493 1.21393 0.94959 0.96930 0.98847 0.90844 1.21895 1.00962 1.00715 0.97056 1.21259 0.92448 0.84303 1.01837 1.46151 1.08143 1.07910 1.78166 1.20800 0.81021 0.92445 0.75919 1.90744 1.53948 1.46248 1.46231 1.21631 0.99499 0.92708 1.01715 1.18306 0.89996 0.88942 1.00101 0.92449 1.20583 1.09159 1.31208 0.91151 0.91137 1.24859 0.96855 0.94161 0.95691 1.69886 1.22202 1.34039 1.27529 0.86963 0.79796 0.77478 0.85870 1.20259 1.21816 1.18659 1.20813 0.94612 0.96973 0.91558 1.20980 0.99975 0.92038 0.98995 1.21065 0.99718 0.96783 0.96875 1.20861 1.02520 0.98612 0.94842 1.20962 1.00745 0.93706 0.98829 1.21083 1.01250 0.96033 0.97548 0.92880 0.92473 0.92860 0.91756 0.91610 0.92547 0.92375 0.92495 0.92215 0.91793 0.77518 0.91493 0.89935 0.92887 0.86195 0.87160 0.87399 0.87338 0.87304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.12 -1.06 5.40 -26.73 -0.14 -1.21 16 3 C -0.10 -1.01 2.42 -90.62 -0.22 -1.23 16 4 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.15 -1.40 8.82 37.16 0.33 -1.07 16 6 C 0.13 1.73 5.06 -4.04 -0.02 1.71 16 7 N -0.75 -11.15 5.28 -60.29 -0.32 -11.47 16 8 C 0.51 10.23 7.58 -10.99 -0.08 10.14 16 9 O -0.50 -12.65 14.98 5.55 0.08 -12.56 16 10 C -0.12 -2.17 4.96 -27.88 -0.14 -2.31 16 11 C 0.05 1.06 1.21 -92.92 -0.11 0.95 16 12 H 0.06 1.44 4.70 -51.93 -0.24 1.19 16 13 C -0.48 -13.45 6.87 -34.44 -0.24 -13.69 16 14 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 15 C 0.09 2.58 5.47 -17.82 -0.10 2.48 16 16 N -0.90 -28.43 13.96 55.43 0.77 -27.66 16 17 Si 0.87 23.08 27.15 -169.99 -4.62 18.46 16 18 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 20 H -0.26 -6.70 6.06 56.52 0.34 -6.36 16 21 C -0.04 -0.82 4.55 -104.62 -0.48 -1.30 16 22 C -0.10 -1.99 8.87 -39.58 -0.35 -2.34 16 23 C -0.13 -2.16 10.05 -39.58 -0.40 -2.55 16 24 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 25 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 26 C -0.14 -2.78 9.43 -39.59 -0.37 -3.16 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.54 7.18 -51.93 -0.37 0.16 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 37 H 0.39 4.55 7.66 -40.82 -0.31 4.24 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16 40 H 0.26 7.86 8.31 -40.82 -0.34 7.53 16 41 H 0.12 2.31 7.80 -52.49 -0.41 1.90 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 45 H 0.11 2.09 7.95 -52.49 -0.42 1.67 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -33.84 362.20 -8.91 -42.76 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.54 Total: 4.75 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -2.76 Total: -19.74 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.45 Total: -39.12 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.62 Total: 18.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.84 -8.91 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421597914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.286 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds