Wall clock time and date at job start Tue Mar 31 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46653 * 2 1 4 4 H 1.08996 * 109.47069 * 304.99352 * 3 2 1 5 5 C 1.52992 * 109.47366 * 64.99825 * 3 2 1 6 6 C 1.53005 * 109.46870 * 184.99782 * 3 2 1 7 7 N 1.46502 * 109.46864 * 174.99510 * 6 3 2 8 8 C 1.34777 * 119.99559 * 179.97438 * 7 6 3 9 9 O 1.21283 * 120.00046 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.99686 * 180.02562 * 8 7 6 11 11 C 1.53005 * 109.46990 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.46934 * 305.97546 * 11 10 8 13 13 C 1.50700 * 109.47299 * 65.97885 * 11 10 8 14 14 H 1.08008 * 119.99531 * 26.90748 * 13 11 10 15 15 C 1.37869 * 120.00160 * 206.90965 * 13 11 10 16 16 N 1.31508 * 120.00032 * 353.27812 * 15 13 11 17 17 Si 1.86806 * 120.00073 * 173.54969 * 15 13 11 18 18 H 1.48497 * 109.46895 * 179.72442 * 17 15 13 19 19 H 1.48495 * 109.46957 * 299.72695 * 17 15 13 20 20 H 1.48501 * 109.46761 * 59.72686 * 17 15 13 21 21 C 1.50705 * 109.47056 * 185.97689 * 11 10 8 22 22 C 1.38237 * 120.00118 * 294.44966 * 21 11 10 23 23 C 1.38237 * 119.99818 * 179.78603 * 22 21 11 24 24 C 1.38236 * 120.00003 * 0.44191 * 23 22 21 25 25 C 1.38236 * 119.99991 * 359.81061 * 24 23 22 26 26 C 1.38228 * 119.99825 * 114.71859 * 21 11 10 27 27 H 1.08993 * 109.47209 * 300.00567 * 1 2 3 28 28 H 1.08998 * 109.46546 * 60.00731 * 1 2 3 29 29 H 1.08999 * 109.46610 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47510 * 240.00143 * 2 1 3 31 31 H 1.08999 * 109.47006 * 119.99012 * 2 1 3 32 32 H 1.08996 * 109.47413 * 59.99738 * 5 3 2 33 33 H 1.08999 * 109.47579 * 179.97438 * 5 3 2 34 34 H 1.09008 * 109.47367 * 299.99660 * 5 3 2 35 35 H 1.08998 * 109.47146 * 54.99962 * 6 3 2 36 36 H 1.08995 * 109.46642 * 294.99589 * 6 3 2 37 37 H 0.97002 * 120.00062 * 0.02562 * 7 6 3 38 38 H 1.09000 * 109.47229 * 60.00363 * 10 8 7 39 39 H 1.09003 * 109.47630 * 300.00294 * 10 8 7 40 40 H 0.97008 * 120.00303 * 354.69126 * 16 15 13 41 41 H 1.08005 * 119.99967 * 359.97438 * 22 21 11 42 42 H 1.07999 * 119.99448 * 180.27078 * 23 22 21 43 43 H 1.07997 * 119.99991 * 179.83259 * 24 23 22 44 44 H 1.07993 * 119.99965 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.00249 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3072 6 6 3.5649 1.4445 -0.1257 7 7 4.0432 2.8240 -0.2459 8 6 5.3624 3.0715 -0.3685 9 8 6.1533 2.1521 -0.3797 10 6 5.8545 4.4905 -0.4915 11 6 7.3793 4.4924 -0.6173 12 1 7.8132 3.9383 0.2150 13 6 7.7770 3.8405 -1.9165 14 1 7.0992 3.8544 -2.7573 15 6 9.0061 3.2266 -2.0319 16 7 9.8832 3.3227 -1.0569 17 14 9.4282 2.2644 -3.5765 18 1 10.8010 1.7114 -3.4554 19 1 8.4596 1.1518 -3.7467 20 1 9.3595 3.1652 -4.7550 21 6 7.8836 5.9123 -0.5927 22 6 7.5602 6.7786 -1.6203 23 6 8.0192 8.0823 -1.5955 24 6 8.8091 8.5172 -0.5477 25 6 9.1368 7.6494 0.4772 26 6 8.6742 6.3469 0.4546 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 2.0697 1.5877 2.1491 33 1 1.9988 3.1542 1.3075 34 1 0.5488 2.1253 1.3968 35 1 3.8571 0.8802 -1.0112 36 1 4.0029 0.9838 0.7597 37 1 3.4105 3.5592 -0.2365 38 1 5.5619 5.0546 0.3941 39 1 5.4166 4.9515 -1.3769 40 1 9.6970 3.8880 -0.2908 41 1 6.9465 6.4377 -2.4410 42 1 7.7629 8.7603 -2.3962 43 1 9.1699 9.5349 -0.5297 44 1 9.7536 7.9892 1.2960 45 1 8.9302 5.6691 1.2554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421597915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:18 Heat of formation + Delta-G solvation = -44.437813 kcal Electronic energy + Delta-G solvation = -22883.333797 eV Core-core repulsion = 19671.395442 eV Total energy + Delta-G solvation = -3211.938356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.25641 -38.36971 -36.99236 -34.29791 -33.41333 -31.31449 -30.10531 -29.96261 -28.84920 -26.77321 -24.95707 -23.38365 -22.54585 -21.64409 -20.37827 -20.10956 -19.30436 -16.92426 -16.33997 -15.91867 -15.67788 -15.21996 -14.74589 -14.55269 -14.07611 -14.02566 -13.65138 -13.53504 -13.17665 -12.92656 -12.63002 -12.42722 -12.28381 -12.17725 -12.08106 -11.82773 -11.61178 -11.39036 -10.96531 -10.86126 -10.76709 -10.70825 -10.69750 -10.41942 -10.10553 -10.01829 -9.65961 -8.99288 -8.61078 -8.52569 -8.25228 -8.12930 -7.62288 -6.19818 -3.88439 2.20012 2.25713 3.50652 3.53623 3.57602 3.71259 3.73342 4.62363 4.65646 4.69757 4.70012 4.78850 5.14587 5.31242 5.33495 5.43335 5.49531 5.60465 5.62980 5.64590 5.72657 5.77451 5.78711 5.81175 5.87216 5.91247 6.01863 6.04543 6.11213 6.17931 6.22496 6.26043 6.32925 6.43809 6.71080 6.80400 6.94094 6.94658 7.22391 7.24333 7.39630 7.74922 7.87034 8.08548 8.25780 8.54264 8.99385 9.07510 9.80345 11.19736 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014413 B = 0.004290 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.174315 B = 6524.625229 C = 7890.853841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.103 4.103 4 H 0.074 0.926 5 C -0.148 4.148 6 C 0.126 3.874 7 N -0.749 5.749 8 C 0.511 3.489 9 O -0.500 6.500 10 C -0.116 4.116 11 C 0.073 3.927 12 H 0.049 0.951 13 C -0.566 4.566 14 H 0.044 0.956 15 C 0.032 3.968 16 N -0.907 5.907 17 Si 1.060 2.940 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.291 1.291 21 C -0.032 4.032 22 C -0.107 4.107 23 C -0.130 4.130 24 C -0.153 4.153 25 C -0.125 4.125 26 C -0.130 4.130 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.391 0.609 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.271 0.729 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.978 2.001 3.340 16.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.122 4.122 4 H 0.093 0.907 5 C -0.206 4.206 6 C 0.002 3.998 7 N -0.405 5.405 8 C 0.298 3.702 9 O -0.372 6.372 10 C -0.157 4.157 11 C 0.053 3.947 12 H 0.067 0.933 13 C -0.604 4.604 14 H 0.063 0.937 15 C -0.174 4.174 16 N -0.542 5.542 17 Si 0.889 3.111 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.217 1.217 21 C -0.033 4.033 22 C -0.125 4.125 23 C -0.148 4.148 24 C -0.171 4.171 25 C -0.143 4.143 26 C -0.149 4.149 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.225 0.775 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.173 0.332 2.641 14.421 hybrid contribution -1.413 1.367 0.556 2.043 sum -15.585 1.699 3.197 16.000 Atomic orbital electron populations 1.21808 0.95773 1.01510 1.01841 1.21502 0.95862 0.95763 1.02498 1.21400 0.94958 0.96997 0.98846 0.90722 1.21892 1.01055 1.00602 0.97016 1.21254 0.92451 0.84348 1.01769 1.46188 1.08176 1.07890 1.78199 1.20849 0.81065 0.92551 0.75749 1.90748 1.54222 1.46217 1.45979 1.21658 1.00487 0.92248 1.01269 1.17865 0.88463 0.88224 1.00109 0.93261 1.21524 1.03814 1.38287 0.96758 0.93720 1.25568 0.92916 0.96435 1.02433 1.70730 1.36668 1.37691 1.09108 0.83688 0.76167 0.76393 0.74831 1.20937 1.21537 1.21738 1.20861 0.94162 0.96734 0.91544 1.20929 1.00646 0.92571 0.98329 1.21016 0.99361 0.96317 0.98143 1.20823 1.01372 0.98964 0.95921 1.20965 1.00447 0.94320 0.98557 1.21077 0.99612 0.95238 0.98936 0.92516 0.92801 0.92845 0.91641 0.91700 0.92526 0.92576 0.92471 0.91982 0.92110 0.77530 0.91732 0.90342 0.91799 0.86688 0.87457 0.87591 0.87456 0.87161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.12 -1.05 5.40 -26.72 -0.14 -1.19 16 3 C -0.10 -1.01 2.42 -90.62 -0.22 -1.23 16 4 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.15 -1.31 8.82 37.15 0.33 -0.98 16 6 C 0.13 1.72 5.06 -4.04 -0.02 1.70 16 7 N -0.75 -11.25 5.28 -60.29 -0.32 -11.57 16 8 C 0.51 10.37 7.58 -10.99 -0.08 10.29 16 9 O -0.50 -12.80 15.02 5.55 0.08 -12.71 16 10 C -0.12 -2.29 4.95 -27.88 -0.14 -2.42 16 11 C 0.07 1.76 1.23 -92.92 -0.11 1.64 16 12 H 0.05 1.35 6.59 -51.93 -0.34 1.01 16 13 C -0.57 -15.60 6.35 -34.44 -0.22 -15.82 16 14 H 0.04 1.23 7.82 -52.48 -0.41 0.82 16 15 C 0.03 0.93 5.45 -17.83 -0.10 0.83 16 16 N -0.91 -28.02 13.56 55.43 0.75 -27.27 16 17 Si 1.06 26.57 29.91 -169.99 -5.08 21.48 16 18 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 C -0.03 -0.72 4.53 -104.62 -0.47 -1.20 16 22 C -0.11 -2.20 8.90 -39.58 -0.35 -2.55 16 23 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 24 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 25 C -0.12 -2.31 10.05 -39.58 -0.40 -2.71 16 26 C -0.13 -2.75 9.18 -39.58 -0.36 -3.12 16 27 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.50 7.18 -51.93 -0.37 0.12 16 34 H 0.06 0.43 6.57 -51.92 -0.34 0.09 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.39 4.64 7.65 -40.82 -0.31 4.32 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.44 7.96 -51.93 -0.41 1.02 16 40 H 0.27 8.23 6.24 -40.82 -0.25 7.98 16 41 H 0.12 2.32 7.85 -52.48 -0.41 1.91 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 44 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.11 2.30 7.95 -52.49 -0.42 1.88 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -33.46 364.61 -9.29 -42.75 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.49 Total: 5.17 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -2.73 Total: -23.35 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.43 Total: -38.83 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -5.08 Total: 21.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.46 -9.29 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421597915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.688 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds