Wall clock time and date at job start Tue Mar 31 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46653 * 2 1 4 4 H 1.08996 * 109.47069 * 304.99352 * 3 2 1 5 5 C 1.52992 * 109.47366 * 64.99825 * 3 2 1 6 6 C 1.53005 * 109.46870 * 184.99782 * 3 2 1 7 7 N 1.46502 * 109.46864 * 174.99510 * 6 3 2 8 8 C 1.34777 * 119.99559 * 179.97438 * 7 6 3 9 9 O 1.21283 * 120.00046 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.99686 * 180.02562 * 8 7 6 11 11 C 1.53005 * 109.46990 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.46934 * 305.97546 * 11 10 8 13 13 C 1.50700 * 109.47299 * 65.97885 * 11 10 8 14 14 H 1.08008 * 119.99531 * 26.90748 * 13 11 10 15 15 C 1.37869 * 120.00160 * 206.90965 * 13 11 10 16 16 N 1.31508 * 120.00032 * 353.27812 * 15 13 11 17 17 Si 1.86806 * 120.00073 * 173.54969 * 15 13 11 18 18 H 1.48497 * 109.46895 * 179.72442 * 17 15 13 19 19 H 1.48495 * 109.46957 * 299.72695 * 17 15 13 20 20 H 1.48501 * 109.46761 * 59.72686 * 17 15 13 21 21 C 1.50705 * 109.47056 * 185.97689 * 11 10 8 22 22 C 1.38237 * 120.00118 * 294.44966 * 21 11 10 23 23 C 1.38237 * 119.99818 * 179.78603 * 22 21 11 24 24 C 1.38236 * 120.00003 * 0.44191 * 23 22 21 25 25 C 1.38236 * 119.99991 * 359.81061 * 24 23 22 26 26 C 1.38228 * 119.99825 * 114.71859 * 21 11 10 27 27 H 1.08993 * 109.47209 * 300.00567 * 1 2 3 28 28 H 1.08998 * 109.46546 * 60.00731 * 1 2 3 29 29 H 1.08999 * 109.46610 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47510 * 240.00143 * 2 1 3 31 31 H 1.08999 * 109.47006 * 119.99012 * 2 1 3 32 32 H 1.08996 * 109.47413 * 59.99738 * 5 3 2 33 33 H 1.08999 * 109.47579 * 179.97438 * 5 3 2 34 34 H 1.09008 * 109.47367 * 299.99660 * 5 3 2 35 35 H 1.08998 * 109.47146 * 54.99962 * 6 3 2 36 36 H 1.08995 * 109.46642 * 294.99589 * 6 3 2 37 37 H 0.97002 * 120.00062 * 0.02562 * 7 6 3 38 38 H 1.09000 * 109.47229 * 60.00363 * 10 8 7 39 39 H 1.09003 * 109.47630 * 300.00294 * 10 8 7 40 40 H 0.97008 * 120.00303 * 354.69126 * 16 15 13 41 41 H 1.08005 * 119.99967 * 359.97438 * 22 21 11 42 42 H 1.07999 * 119.99448 * 180.27078 * 23 22 21 43 43 H 1.07997 * 119.99991 * 179.83259 * 24 23 22 44 44 H 1.07993 * 119.99965 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.00249 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3072 6 6 3.5649 1.4445 -0.1257 7 7 4.0432 2.8240 -0.2459 8 6 5.3624 3.0715 -0.3685 9 8 6.1533 2.1521 -0.3797 10 6 5.8545 4.4905 -0.4915 11 6 7.3793 4.4924 -0.6173 12 1 7.8132 3.9383 0.2150 13 6 7.7770 3.8405 -1.9165 14 1 7.0992 3.8544 -2.7573 15 6 9.0061 3.2266 -2.0319 16 7 9.8832 3.3227 -1.0569 17 14 9.4282 2.2644 -3.5765 18 1 10.8010 1.7114 -3.4554 19 1 8.4596 1.1518 -3.7467 20 1 9.3595 3.1652 -4.7550 21 6 7.8836 5.9123 -0.5927 22 6 7.5602 6.7786 -1.6203 23 6 8.0192 8.0823 -1.5955 24 6 8.8091 8.5172 -0.5477 25 6 9.1368 7.6494 0.4772 26 6 8.6742 6.3469 0.4546 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 2.0697 1.5877 2.1491 33 1 1.9988 3.1542 1.3075 34 1 0.5488 2.1253 1.3968 35 1 3.8571 0.8802 -1.0112 36 1 4.0029 0.9838 0.7597 37 1 3.4105 3.5592 -0.2365 38 1 5.5619 5.0546 0.3941 39 1 5.4166 4.9515 -1.3769 40 1 9.6970 3.8880 -0.2908 41 1 6.9465 6.4377 -2.4410 42 1 7.7629 8.7603 -2.3962 43 1 9.1699 9.5349 -0.5297 44 1 9.7536 7.9892 1.2960 45 1 8.9302 5.6691 1.2554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421597915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:17 Heat of formation + Delta-G solvation = -64.011596 kcal Electronic energy + Delta-G solvation = -22884.182580 eV Core-core repulsion = 19671.395442 eV Total energy + Delta-G solvation = -3212.787139 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.83798 -39.87553 -38.07331 -36.10566 -34.75817 -33.27187 -31.61350 -31.04125 -30.15037 -27.93603 -26.68332 -24.86598 -23.80217 -23.17441 -21.80230 -21.39553 -20.69643 -18.83614 -17.98283 -17.29368 -16.99686 -16.46946 -16.21524 -15.78120 -15.65812 -15.53189 -15.16177 -14.70762 -14.64143 -14.26920 -14.05589 -13.97195 -13.74615 -13.46218 -13.17065 -12.96253 -12.86796 -12.65855 -12.62520 -12.35512 -12.08332 -11.96177 -11.79997 -11.67773 -11.59434 -11.50447 -11.46423 -10.76450 -10.57927 -10.35971 -9.96969 -9.64503 -9.27389 -8.44834 -6.11502 0.67433 0.73465 1.47026 1.57611 1.73494 1.89218 2.36228 2.61887 3.10503 3.36157 3.77166 3.90161 3.98570 4.12072 4.13304 4.28258 4.29647 4.40459 4.44238 4.48521 4.53016 4.60952 4.65935 4.73448 4.78161 4.82879 4.87007 4.88666 5.07975 5.09128 5.14737 5.18725 5.21557 5.23471 5.40484 5.42922 5.45491 5.51594 5.61658 5.74337 5.81940 5.94611 6.23917 6.30764 6.40350 6.72601 6.78330 7.52775 7.63852 8.95532 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014413 B = 0.004290 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.174315 B = 6524.625229 C = 7890.853841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.091 4.091 4 H 0.086 0.914 5 C -0.147 4.147 6 C 0.124 3.876 7 N -0.724 5.724 8 C 0.508 3.492 9 O -0.564 6.564 10 C -0.110 4.110 11 C 0.074 3.926 12 H 0.003 0.997 13 C -0.557 4.557 14 H 0.039 0.961 15 C -0.025 4.025 16 N -0.944 5.944 17 Si 1.097 2.903 18 H -0.288 1.288 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.056 4.056 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.125 4.125 26 C -0.153 4.153 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.411 0.589 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.260 0.740 41 H 0.114 0.886 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.035 4.465 2.614 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.110 4.110 4 H 0.105 0.895 5 C -0.204 4.204 6 C 0.000 4.000 7 N -0.379 5.379 8 C 0.296 3.704 9 O -0.441 6.441 10 C -0.151 4.151 11 C 0.055 3.945 12 H 0.021 0.979 13 C -0.595 4.595 14 H 0.057 0.943 15 C -0.224 4.224 16 N -0.582 5.582 17 Si 0.921 3.079 18 H -0.214 1.214 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.056 4.056 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.162 4.162 25 C -0.143 4.143 26 C -0.172 4.172 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.248 0.752 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.153 0.847 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.312 2.837 1.912 16.667 hybrid contribution -0.861 0.676 0.847 1.384 sum -17.173 3.514 2.759 17.745 Atomic orbital electron populations 1.21778 0.94116 1.02179 1.02443 1.21513 0.97227 0.94883 1.02113 1.21340 0.91486 0.98116 1.00045 0.89544 1.21895 1.02363 1.00284 0.95886 1.21371 0.95393 0.82985 1.00210 1.45933 1.06785 1.09400 1.75817 1.21030 0.82229 0.92146 0.75012 1.90727 1.56219 1.47800 1.49372 1.21566 0.97611 0.92504 1.03374 1.17690 0.91149 0.89025 0.96677 0.97885 1.21790 1.02797 1.37245 0.97642 0.94301 1.26734 0.93671 0.97713 1.04251 1.70813 1.37808 1.39623 1.09995 0.83212 0.75615 0.75894 0.73154 1.21380 1.21356 1.19047 1.20621 0.95744 0.95978 0.93300 1.21013 1.01523 0.93752 0.97767 1.21412 0.98179 0.95522 0.99119 1.21313 0.99782 1.00512 0.94563 1.21302 1.00013 0.93116 0.99851 1.21132 1.00490 0.96697 0.98860 0.91709 0.92337 0.92249 0.92309 0.91995 0.93219 0.92448 0.90434 0.93858 0.93589 0.75179 0.88932 0.88493 0.92922 0.86812 0.83905 0.83503 0.84679 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.67 71.98 0.70 -1.17 16 2 C -0.12 -1.98 5.40 30.60 0.17 -1.81 16 3 C -0.09 -1.65 2.42 -10.79 -0.03 -1.68 16 4 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 5 C -0.15 -2.29 8.82 71.98 0.63 -1.65 16 6 C 0.12 3.44 5.06 86.38 0.44 3.88 16 7 N -0.72 -21.50 5.28 -463.05 -2.45 -23.94 16 8 C 0.51 21.14 7.58 87.66 0.66 21.81 16 9 O -0.56 -30.46 15.02 -3.04 -0.05 -30.50 16 10 C -0.11 -4.37 4.95 29.85 0.15 -4.23 16 11 C 0.07 3.72 1.23 -12.28 -0.02 3.71 16 12 H 0.00 0.17 6.59 -2.39 -0.02 0.16 16 13 C -0.56 -31.65 6.35 25.60 0.16 -31.49 16 14 H 0.04 2.19 7.82 -2.91 -0.02 2.17 16 15 C -0.03 -1.53 5.45 84.65 0.46 -1.07 16 16 N -0.94 -61.17 13.56 21.44 0.29 -60.88 16 17 Si 1.10 54.86 29.91 68.60 2.05 56.92 16 18 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 19 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 C -0.06 -2.53 4.53 -19.87 -0.09 -2.62 16 22 C -0.12 -4.90 8.90 22.27 0.20 -4.70 16 23 C -0.12 -4.09 10.05 22.27 0.22 -3.87 16 24 C -0.14 -4.47 10.05 22.27 0.22 -4.25 16 25 C -0.12 -4.37 10.05 22.27 0.22 -4.14 16 26 C -0.15 -6.58 9.18 22.27 0.20 -6.37 16 27 H 0.06 0.72 6.56 -2.39 -0.02 0.70 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.88 7.18 -2.39 -0.02 0.86 16 34 H 0.08 0.93 6.57 -2.38 -0.02 0.91 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.41 8.98 7.65 -92.71 -0.71 8.27 16 38 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.10 3.46 7.96 -2.39 -0.02 3.44 16 40 H 0.26 16.85 6.24 -92.70 -0.58 16.28 16 41 H 0.11 4.47 7.85 -2.91 -0.02 4.45 16 42 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 44 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 45 H 0.09 4.22 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -77.39 364.61 4.60 -72.79 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.44 Total: 25.29 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 4.31 Total: -39.67 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -2.16 Total: -84.83 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.05 Total: -30.50 kcal Atomic # 14 Polarization: 54.86 SS G_CDS: 2.05 Total: 56.92 kcal Total: -77.39 4.60 -72.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421597915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.781 kcal (2) G-P(sol) polarization free energy of solvation -77.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds