Wall clock time and date at job start Tue Mar 31 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47353 * 2 1 4 4 H 1.08996 * 109.47036 * 54.99837 * 3 2 1 5 5 C 1.53007 * 109.46618 * 295.00021 * 3 2 1 6 6 C 1.52996 * 109.47346 * 175.00353 * 3 2 1 7 7 N 1.46501 * 109.47208 * 184.99786 * 6 3 2 8 8 C 1.34771 * 119.99954 * 180.27139 * 7 6 3 9 9 O 1.21284 * 120.00088 * 359.72497 * 8 7 6 10 10 C 1.50700 * 120.00052 * 179.72392 * 8 7 6 11 11 C 1.52999 * 109.47123 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47148 * 54.99952 * 11 10 8 13 13 C 1.50699 * 109.47348 * 294.99894 * 11 10 8 14 14 H 1.08001 * 120.00176 * 325.13220 * 13 11 10 15 15 C 1.37878 * 120.00129 * 145.12786 * 13 11 10 16 16 N 1.31510 * 119.99812 * 184.99385 * 15 13 11 17 17 Si 1.86804 * 119.99881 * 4.98903 * 15 13 11 18 18 H 1.48497 * 109.46990 * 84.72851 * 17 15 13 19 19 H 1.48494 * 109.46845 * 204.73066 * 17 15 13 20 20 H 1.48493 * 109.47002 * 324.73078 * 17 15 13 21 21 C 1.50703 * 109.47004 * 174.99919 * 11 10 8 22 22 C 1.38246 * 119.99828 * 64.69478 * 21 11 10 23 23 C 1.38234 * 119.99671 * 179.80872 * 22 21 11 24 24 C 1.38236 * 120.00124 * 0.39994 * 23 22 21 25 25 C 1.38238 * 119.99812 * 359.85114 * 24 23 22 26 26 C 1.38229 * 120.00270 * 244.96403 * 21 11 10 27 27 H 1.09005 * 109.47026 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46566 * 300.00120 * 1 2 3 29 29 H 1.08994 * 109.47154 * 60.00089 * 1 2 3 30 30 H 1.08997 * 109.46937 * 239.99209 * 2 1 3 31 31 H 1.09008 * 109.47224 * 120.00027 * 2 1 3 32 32 H 1.08999 * 109.46570 * 180.02562 * 5 3 2 33 33 H 1.09002 * 109.46864 * 299.99616 * 5 3 2 34 34 H 1.09000 * 109.46802 * 59.99916 * 5 3 2 35 35 H 1.09001 * 109.47716 * 64.99282 * 6 3 2 36 36 H 1.09010 * 109.47003 * 304.99584 * 6 3 2 37 37 H 0.97001 * 119.99683 * 359.97438 * 7 6 3 38 38 H 1.09001 * 109.46940 * 300.00351 * 10 8 7 39 39 H 1.09004 * 109.47032 * 60.00077 * 10 8 7 40 40 H 0.97010 * 119.99770 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.99588 * 359.97438 * 22 21 11 42 42 H 1.08000 * 119.99656 * 180.22783 * 23 22 21 43 43 H 1.07994 * 120.00018 * 179.83427 * 24 23 22 44 44 H 1.08007 * 119.99700 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.99978 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1256 7 7 4.0434 2.8238 0.2457 8 6 5.3629 3.0715 0.3632 9 8 6.1539 2.1521 0.3746 10 6 5.8556 4.4908 0.4804 11 6 7.3809 4.4930 0.5999 12 1 7.8121 3.9514 -0.2420 13 6 7.7848 3.8232 1.8880 14 1 7.1705 3.9328 2.7695 15 6 8.9387 3.0703 1.9413 16 7 9.2404 2.4059 3.0354 17 14 10.0732 2.9938 0.4592 18 1 10.9946 4.1582 0.4806 19 1 10.8627 1.7369 0.5046 20 1 9.2642 3.0256 -0.7856 21 6 7.8833 5.9138 0.5935 22 6 7.5483 6.7700 1.6260 23 6 8.0124 8.0721 1.6221 24 6 8.8045 8.5205 0.5817 25 6 9.1352 7.6658 -0.4532 26 6 8.6744 6.3626 -0.4474 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.9990 3.1540 -1.3076 33 1 2.0700 1.5874 -2.1492 34 1 0.5490 2.1251 -1.3969 35 1 4.0031 0.9835 -0.7597 36 1 3.8572 0.8800 1.0113 37 1 3.4108 3.5591 0.2362 38 1 5.5601 5.0523 -0.4059 39 1 5.4207 4.9545 1.3659 40 1 10.0520 1.8759 3.0727 41 1 6.9262 6.4207 2.4368 42 1 7.7537 8.7399 2.4305 43 1 9.1649 9.5385 0.5774 44 1 9.7538 8.0162 -1.2663 45 1 8.9328 5.6948 -1.2559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421597916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:20 Heat of formation + Delta-G solvation = -37.471383 kcal Electronic energy + Delta-G solvation = -22913.870819 eV Core-core repulsion = 19702.234550 eV Total energy + Delta-G solvation = -3211.636269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.25483 -38.43674 -36.96885 -34.13459 -33.37358 -31.63495 -30.21598 -29.97137 -28.89171 -26.92117 -25.57768 -23.33608 -22.39726 -21.82075 -20.34422 -20.01165 -19.02844 -16.92212 -16.54438 -15.94896 -15.65096 -15.23276 -14.71872 -14.50349 -14.32792 -14.02611 -13.80621 -13.53752 -13.03472 -12.88460 -12.69109 -12.52994 -12.25189 -12.21737 -12.14177 -11.86731 -11.83249 -11.47853 -11.07154 -10.91360 -10.76397 -10.75880 -10.67473 -10.48940 -10.33748 -9.83310 -9.57785 -9.05103 -8.90590 -8.50595 -8.38514 -8.22592 -7.80713 -5.94888 -3.91213 2.08900 2.14828 3.44027 3.48287 3.49461 3.56264 3.74648 4.52796 4.59229 4.69132 4.73174 4.81979 5.17619 5.31440 5.34468 5.37978 5.50923 5.51691 5.55587 5.63695 5.68695 5.74681 5.81442 5.84103 5.90402 5.94014 5.96903 6.04879 6.06339 6.12404 6.24470 6.25524 6.29131 6.34139 6.64304 6.70821 6.84338 6.97658 7.06633 7.13962 7.27085 7.60328 7.74090 7.85225 8.12283 8.56612 9.03690 9.10444 9.69880 11.18466 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.004238 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.663549 B = 6605.389369 C = 7625.147812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.103 4.103 4 H 0.075 0.925 5 C -0.148 4.148 6 C 0.126 3.874 7 N -0.748 5.748 8 C 0.512 3.488 9 O -0.500 6.500 10 C -0.115 4.115 11 C 0.046 3.954 12 H 0.058 0.942 13 C -0.484 4.484 14 H 0.071 0.929 15 C 0.087 3.913 16 N -0.899 5.899 17 Si 0.870 3.130 18 H -0.277 1.277 19 H -0.292 1.292 20 H -0.261 1.261 21 C -0.039 4.039 22 C -0.102 4.102 23 C -0.126 4.126 24 C -0.150 4.150 25 C -0.124 4.124 26 C -0.141 4.141 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.392 0.608 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.261 0.739 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.445 3.995 -7.830 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.122 4.122 4 H 0.093 0.907 5 C -0.205 4.205 6 C 0.002 3.998 7 N -0.404 5.404 8 C 0.298 3.702 9 O -0.372 6.372 10 C -0.156 4.156 11 C 0.027 3.973 12 H 0.076 0.924 13 C -0.521 4.521 14 H 0.089 0.911 15 C -0.116 4.116 16 N -0.537 5.537 17 Si 0.699 3.301 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.187 1.187 21 C -0.040 4.040 22 C -0.120 4.120 23 C -0.144 4.144 24 C -0.168 4.168 25 C -0.142 4.142 26 C -0.159 4.159 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.225 0.775 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.678 3.157 -7.723 16.022 hybrid contribution 0.508 0.236 -0.587 0.811 sum -13.170 3.393 -8.310 15.938 Atomic orbital electron populations 1.21808 0.95801 1.01488 1.01827 1.21502 0.95835 0.95797 1.02506 1.21400 0.95012 0.96977 0.98823 0.90673 1.21895 1.01031 1.00592 0.97027 1.21255 0.92390 0.84353 1.01825 1.46151 1.08113 1.07896 1.78210 1.20800 0.81137 0.92467 0.75780 1.90744 1.54275 1.46243 1.45910 1.21631 0.99819 0.92479 1.01622 1.18306 0.89984 0.88707 1.00349 0.92446 1.20585 1.08318 1.28647 0.94563 0.91135 1.24860 0.97415 0.94031 0.95267 1.69888 1.25467 1.30615 1.27685 0.86963 0.81017 0.77260 0.84859 1.20259 1.21816 1.18661 1.20812 0.94518 0.96708 0.91919 1.20980 1.00262 0.92539 0.98206 1.21065 0.98927 0.96327 0.98124 1.20861 1.01160 0.99066 0.95746 1.20962 1.00450 0.94266 0.98567 1.21083 1.00320 0.95516 0.98996 0.92872 0.92780 0.92551 0.91746 0.91595 0.92566 0.92576 0.92504 0.92157 0.91846 0.77519 0.91495 0.89933 0.92888 0.86194 0.87159 0.87400 0.87337 0.87304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.67 37.16 0.36 -0.79 16 2 C -0.12 -1.07 5.40 -26.73 -0.14 -1.21 16 3 C -0.10 -1.02 2.42 -90.62 -0.22 -1.24 16 4 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.15 -1.30 8.82 37.16 0.33 -0.97 16 6 C 0.13 1.73 5.06 -4.04 -0.02 1.71 16 7 N -0.75 -11.15 5.28 -60.29 -0.32 -11.47 16 8 C 0.51 10.23 7.58 -10.99 -0.08 10.14 16 9 O -0.50 -12.65 14.98 5.55 0.08 -12.57 16 10 C -0.12 -2.17 4.96 -27.88 -0.14 -2.31 16 11 C 0.05 1.06 1.21 -92.92 -0.11 0.95 16 12 H 0.06 1.44 4.70 -51.93 -0.24 1.19 16 13 C -0.48 -13.46 6.87 -34.44 -0.24 -13.70 16 14 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 15 C 0.09 2.58 5.47 -17.82 -0.10 2.48 16 16 N -0.90 -28.44 13.96 55.43 0.77 -27.66 16 17 Si 0.87 23.08 27.15 -169.99 -4.62 18.47 16 18 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 20 H -0.26 -6.70 6.06 56.52 0.34 -6.36 16 21 C -0.04 -0.82 4.55 -104.62 -0.48 -1.30 16 22 C -0.10 -1.99 8.87 -39.58 -0.35 -2.34 16 23 C -0.13 -2.16 10.05 -39.58 -0.40 -2.55 16 24 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 25 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 26 C -0.14 -2.78 9.43 -39.59 -0.37 -3.16 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.06 0.49 7.18 -51.93 -0.37 0.11 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.39 4.55 7.65 -40.82 -0.31 4.23 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16 40 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 41 H 0.12 2.31 7.80 -52.49 -0.41 1.90 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 45 H 0.11 2.09 7.95 -52.49 -0.42 1.67 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -33.85 362.20 -8.91 -42.77 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.54 Total: 4.67 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.76 Total: -19.67 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.45 Total: -39.13 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.62 Total: 18.47 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.85 -8.91 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421597916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.298 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds