Wall clock time and date at job start Tue Mar 31 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47353 * 2 1 4 4 H 1.08996 * 109.47036 * 54.99837 * 3 2 1 5 5 C 1.53007 * 109.46618 * 295.00021 * 3 2 1 6 6 C 1.52996 * 109.47346 * 175.00353 * 3 2 1 7 7 N 1.46501 * 109.47208 * 184.99786 * 6 3 2 8 8 C 1.34771 * 119.99954 * 180.27139 * 7 6 3 9 9 O 1.21284 * 120.00088 * 359.72497 * 8 7 6 10 10 C 1.50700 * 120.00052 * 179.72392 * 8 7 6 11 11 C 1.52999 * 109.47123 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47148 * 54.99952 * 11 10 8 13 13 C 1.50699 * 109.47348 * 294.99894 * 11 10 8 14 14 H 1.08001 * 120.00176 * 325.13220 * 13 11 10 15 15 C 1.37878 * 120.00129 * 145.12786 * 13 11 10 16 16 N 1.31510 * 119.99812 * 184.99385 * 15 13 11 17 17 Si 1.86804 * 119.99881 * 4.98903 * 15 13 11 18 18 H 1.48497 * 109.46990 * 84.72851 * 17 15 13 19 19 H 1.48494 * 109.46845 * 204.73066 * 17 15 13 20 20 H 1.48493 * 109.47002 * 324.73078 * 17 15 13 21 21 C 1.50703 * 109.47004 * 174.99919 * 11 10 8 22 22 C 1.38246 * 119.99828 * 64.69478 * 21 11 10 23 23 C 1.38234 * 119.99671 * 179.80872 * 22 21 11 24 24 C 1.38236 * 120.00124 * 0.39994 * 23 22 21 25 25 C 1.38238 * 119.99812 * 359.85114 * 24 23 22 26 26 C 1.38229 * 120.00270 * 244.96403 * 21 11 10 27 27 H 1.09005 * 109.47026 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46566 * 300.00120 * 1 2 3 29 29 H 1.08994 * 109.47154 * 60.00089 * 1 2 3 30 30 H 1.08997 * 109.46937 * 239.99209 * 2 1 3 31 31 H 1.09008 * 109.47224 * 120.00027 * 2 1 3 32 32 H 1.08999 * 109.46570 * 180.02562 * 5 3 2 33 33 H 1.09002 * 109.46864 * 299.99616 * 5 3 2 34 34 H 1.09000 * 109.46802 * 59.99916 * 5 3 2 35 35 H 1.09001 * 109.47716 * 64.99282 * 6 3 2 36 36 H 1.09010 * 109.47003 * 304.99584 * 6 3 2 37 37 H 0.97001 * 119.99683 * 359.97438 * 7 6 3 38 38 H 1.09001 * 109.46940 * 300.00351 * 10 8 7 39 39 H 1.09004 * 109.47032 * 60.00077 * 10 8 7 40 40 H 0.97010 * 119.99770 * 179.97438 * 16 15 13 41 41 H 1.08002 * 119.99588 * 359.97438 * 22 21 11 42 42 H 1.08000 * 119.99656 * 180.22783 * 23 22 21 43 43 H 1.07994 * 120.00018 * 179.83427 * 24 23 22 44 44 H 1.08007 * 119.99700 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.99978 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1256 7 7 4.0434 2.8238 0.2457 8 6 5.3629 3.0715 0.3632 9 8 6.1539 2.1521 0.3746 10 6 5.8556 4.4908 0.4804 11 6 7.3809 4.4930 0.5999 12 1 7.8121 3.9514 -0.2420 13 6 7.7848 3.8232 1.8880 14 1 7.1705 3.9328 2.7695 15 6 8.9387 3.0703 1.9413 16 7 9.2404 2.4059 3.0354 17 14 10.0732 2.9938 0.4592 18 1 10.9946 4.1582 0.4806 19 1 10.8627 1.7369 0.5046 20 1 9.2642 3.0256 -0.7856 21 6 7.8833 5.9138 0.5935 22 6 7.5483 6.7700 1.6260 23 6 8.0124 8.0721 1.6221 24 6 8.8045 8.5205 0.5817 25 6 9.1352 7.6658 -0.4532 26 6 8.6744 6.3626 -0.4474 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.9990 3.1540 -1.3076 33 1 2.0700 1.5874 -2.1492 34 1 0.5490 2.1251 -1.3969 35 1 4.0031 0.9835 -0.7597 36 1 3.8572 0.8800 1.0113 37 1 3.4108 3.5591 0.2362 38 1 5.5601 5.0523 -0.4059 39 1 5.4207 4.9545 1.3659 40 1 10.0520 1.8759 3.0727 41 1 6.9262 6.4207 2.4368 42 1 7.7537 8.7399 2.4305 43 1 9.1649 9.5385 0.5774 44 1 9.7538 8.0162 -1.2663 45 1 8.9328 5.6948 -1.2559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421597916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:19 Heat of formation + Delta-G solvation = -58.362252 kcal Electronic energy + Delta-G solvation = -22914.776715 eV Core-core repulsion = 19702.234550 eV Total energy + Delta-G solvation = -3212.542165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79546 -39.85432 -38.04092 -35.86443 -34.71491 -33.70717 -31.60896 -31.02629 -30.14841 -28.28596 -27.07767 -24.62391 -23.73162 -23.23319 -21.68492 -21.19934 -20.50284 -19.03470 -18.04885 -17.26196 -16.92143 -16.59920 -16.22836 -15.94432 -15.68067 -15.36810 -15.13741 -14.81335 -14.45114 -14.42671 -14.12832 -13.94522 -13.75305 -13.56800 -13.31400 -13.00191 -12.85370 -12.81934 -12.73583 -12.33426 -12.07314 -11.88780 -11.83025 -11.69090 -11.57164 -11.47333 -11.44575 -11.01381 -10.73660 -10.46880 -9.91612 -9.63224 -9.30658 -8.22416 -6.18208 0.67536 0.72864 1.28590 1.32442 1.38205 1.96053 2.39108 2.41917 3.08035 3.22174 3.80344 3.92848 4.00892 4.12807 4.15398 4.30818 4.31696 4.42361 4.45890 4.50118 4.55571 4.63209 4.68367 4.76038 4.81190 4.84872 4.87686 4.91881 5.09166 5.11790 5.16486 5.20694 5.22085 5.23348 5.38295 5.40929 5.47855 5.53545 5.65778 5.70911 5.76334 5.82690 6.02367 6.33088 6.36333 6.79010 6.80583 7.45008 7.58775 8.95105 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.004238 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.663549 B = 6605.389369 C = 7625.147812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.092 4.092 4 H 0.084 0.916 5 C -0.146 4.146 6 C 0.125 3.875 7 N -0.725 5.725 8 C 0.506 3.494 9 O -0.564 6.564 10 C -0.111 4.111 11 C 0.047 3.953 12 H 0.037 0.963 13 C -0.462 4.462 14 H 0.035 0.965 15 C 0.024 3.976 16 N -0.953 5.953 17 Si 0.921 3.079 18 H -0.264 1.264 19 H -0.299 1.299 20 H -0.252 1.252 21 C -0.063 4.063 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.123 4.123 26 C -0.158 4.158 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.412 0.588 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.258 0.742 41 H 0.111 0.889 42 H 0.140 0.860 43 H 0.147 0.853 44 H 0.141 0.859 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 7.078 -9.660 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.111 4.111 4 H 0.102 0.898 5 C -0.203 4.203 6 C 0.001 3.999 7 N -0.380 5.380 8 C 0.294 3.706 9 O -0.441 6.441 10 C -0.151 4.151 11 C 0.028 3.972 12 H 0.055 0.945 13 C -0.500 4.500 14 H 0.053 0.947 15 C -0.172 4.172 16 N -0.595 5.595 17 Si 0.748 3.252 18 H -0.190 1.190 19 H -0.226 1.226 20 H -0.176 1.176 21 C -0.064 4.064 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.158 4.158 25 C -0.141 4.141 26 C -0.176 4.176 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.249 0.751 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.129 0.871 42 H 0.158 0.842 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.134 6.292 -9.582 18.985 hybrid contribution 0.814 -0.604 -0.009 1.014 sum -14.320 5.687 -9.591 18.149 Atomic orbital electron populations 1.21778 0.94126 1.02144 1.02448 1.21516 0.97224 0.95006 1.02043 1.21338 0.91568 0.98018 1.00127 0.89750 1.21889 1.02307 1.00371 0.95740 1.21349 0.95341 0.83131 1.00123 1.45917 1.06885 1.09285 1.75924 1.21100 0.82235 0.92312 0.74979 1.90724 1.56221 1.47884 1.49267 1.21572 0.97102 0.92432 1.03973 1.18160 0.92664 0.89770 0.96600 0.94523 1.20815 1.06502 1.27367 0.95276 0.94719 1.25587 0.99480 0.94651 0.97511 1.70033 1.26430 1.33108 1.29940 0.86148 0.79471 0.77130 0.82493 1.18952 1.22589 1.17633 1.20514 0.96381 0.95672 0.93823 1.21026 1.01137 0.93860 0.97697 1.21415 0.98093 0.95447 0.99205 1.21347 0.99406 1.00653 0.94405 1.21343 0.99931 0.93103 0.99709 1.21214 1.00530 0.97048 0.98822 0.92303 0.92445 0.91574 0.91874 0.92584 0.92240 0.93082 0.90536 0.93284 0.94351 0.75137 0.87687 0.88639 0.93334 0.87140 0.84186 0.83492 0.84158 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.67 71.98 0.70 -1.24 16 2 C -0.12 -2.06 5.40 30.60 0.17 -1.89 16 3 C -0.09 -1.70 2.42 -10.79 -0.03 -1.72 16 4 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 5 C -0.15 -2.21 8.82 71.98 0.64 -1.58 16 6 C 0.12 3.49 5.06 86.38 0.44 3.92 16 7 N -0.73 -21.31 5.28 -463.05 -2.45 -23.76 16 8 C 0.51 20.55 7.58 87.66 0.66 21.21 16 9 O -0.56 -29.82 14.98 -3.04 -0.05 -29.87 16 10 C -0.11 -4.13 4.96 29.85 0.15 -3.99 16 11 C 0.05 2.22 1.21 -12.29 -0.01 2.20 16 12 H 0.04 1.86 4.70 -2.39 -0.01 1.85 16 13 C -0.46 -26.72 6.87 25.60 0.18 -26.55 16 14 H 0.03 2.20 8.06 -2.91 -0.02 2.17 16 15 C 0.02 1.48 5.47 84.66 0.46 1.94 16 16 N -0.95 -63.51 13.96 21.45 0.30 -63.21 16 17 Si 0.92 49.12 27.15 68.60 1.86 50.98 16 18 H -0.26 -13.37 7.11 99.48 0.71 -12.67 16 19 H -0.30 -16.08 7.11 99.48 0.71 -15.38 16 20 H -0.25 -12.86 6.06 99.48 0.60 -12.26 16 21 C -0.06 -2.62 4.55 -19.86 -0.09 -2.71 16 22 C -0.12 -4.49 8.87 22.27 0.20 -4.29 16 23 C -0.12 -3.79 10.05 22.27 0.22 -3.57 16 24 C -0.14 -3.91 10.05 22.27 0.22 -3.68 16 25 C -0.12 -3.75 10.05 22.27 0.22 -3.52 16 26 C -0.16 -5.91 9.43 22.27 0.21 -5.70 16 27 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.75 6.56 -2.39 -0.02 0.73 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.06 0.86 7.18 -2.39 -0.02 0.85 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.90 6.56 -2.39 -0.02 0.88 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.41 8.78 7.65 -92.71 -0.71 8.07 16 38 H 0.10 3.11 8.14 -2.39 -0.02 3.10 16 39 H 0.10 3.30 7.86 -2.38 -0.02 3.28 16 40 H 0.26 16.39 8.31 -92.70 -0.77 15.62 16 41 H 0.11 4.26 7.80 -2.91 -0.02 4.24 16 42 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 43 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 44 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 45 H 0.11 3.95 7.95 -2.91 -0.02 3.93 16 Total: -1.00 -78.56 362.20 4.15 -74.42 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.14 Total: 22.59 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 4.33 Total: -31.16 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -2.15 Total: -86.96 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.05 Total: -29.87 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 1.86 Total: 50.98 kcal Total: -78.56 4.15 -74.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421597916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.055 kcal (2) G-P(sol) polarization free energy of solvation -78.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds