Wall clock time and date at job start Tue Mar 31 2020 06:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 O 1.42896 * 109.47634 * 239.99634 * 2 1 3 5 5 C 1.42906 * 114.00095 * 275.63743 * 4 2 1 6 6 H 1.09002 * 109.47130 * 17.87348 * 5 4 2 7 7 C 1.52994 * 109.46527 * 257.87396 * 5 4 2 8 8 N 1.46500 * 109.47369 * 64.95847 * 7 5 4 9 9 C 1.36936 * 120.00134 * 85.74397 * 8 7 5 10 10 H 1.07998 * 120.00299 * 15.68391 * 9 8 7 11 11 C 1.38814 * 119.99671 * 195.68470 * 9 8 7 12 12 N 1.31615 * 120.00110 * 11.97918 * 11 9 8 13 13 Si 1.86801 * 119.99572 * 191.98356 * 11 9 8 14 14 H 1.48499 * 109.47383 * 89.99958 * 13 11 9 15 15 H 1.48504 * 109.46971 * 209.99988 * 13 11 9 16 16 H 1.48503 * 109.47046 * 329.99396 * 13 11 9 17 17 C 1.46502 * 119.99529 * 265.74331 * 8 7 5 18 18 C 1.53000 * 117.50151 * 313.94694 * 17 8 7 19 19 C 1.53000 * 117.49984 * 245.32208 * 17 8 7 20 20 C 1.50699 * 109.47050 * 137.87681 * 5 4 2 21 21 C 1.38231 * 120.00446 * 39.72411 * 20 5 4 22 22 C 1.38239 * 120.00156 * 179.81357 * 21 20 5 23 23 C 1.38235 * 119.99662 * 0.38932 * 22 21 20 24 24 C 1.38232 * 120.00222 * 359.86443 * 23 22 21 25 25 C 1.38234 * 119.99577 * 219.99634 * 20 5 4 26 26 H 1.09002 * 109.47313 * 60.00247 * 1 2 3 27 27 H 1.09010 * 109.46947 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47472 * 300.00071 * 1 2 3 29 29 H 1.09000 * 109.46795 * 119.99754 * 2 1 3 30 30 H 1.08995 * 109.47201 * 57.28559 * 3 2 1 31 31 H 1.08999 * 109.47205 * 177.28631 * 3 2 1 32 32 H 1.09003 * 109.46864 * 297.28946 * 3 2 1 33 33 H 1.09000 * 109.47190 * 184.95689 * 7 5 4 34 34 H 1.09004 * 109.47705 * 304.95218 * 7 5 4 35 35 H 0.97003 * 119.99839 * 184.97119 * 12 11 9 36 36 H 1.09002 * 115.54888 * 99.65991 * 17 8 7 37 37 H 1.08996 * 117.49720 * 0.02562 * 18 17 8 38 38 H 1.09000 * 117.49764 * 145.02404 * 18 17 8 39 39 H 1.09003 * 117.50200 * 214.97968 * 19 17 8 40 40 H 1.08996 * 117.49739 * 359.97438 * 19 17 8 41 41 H 1.08007 * 120.00085 * 359.97438 * 21 20 5 42 42 H 1.07998 * 120.00022 * 180.23110 * 22 21 20 43 43 H 1.08003 * 119.99727 * 179.83679 * 23 22 21 44 44 H 1.08003 * 119.99844 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.00216 * 359.97438 * 25 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0793 -2.0942 -1.0286 6 1 1.4671 -2.4090 -0.1834 7 6 3.5322 -2.5092 -0.7887 8 7 3.9885 -1.9702 0.4949 9 6 3.7523 -2.6640 1.6517 10 1 3.4659 -3.7044 1.6085 11 6 3.8809 -2.0298 2.8798 12 7 3.9957 -0.7199 2.9352 13 14 3.8911 -3.0359 4.4537 14 1 5.2863 -3.4209 4.7861 15 1 3.3234 -2.2267 5.5620 16 1 3.0715 -4.2597 4.2643 17 6 4.6975 -0.6890 0.5408 18 6 5.8152 -0.4632 -0.4792 19 6 6.1594 -0.7064 0.9916 20 6 1.5715 -2.7480 -2.2878 21 6 1.8871 -2.2102 -3.5215 22 6 1.4244 -2.8122 -4.6768 23 6 0.6395 -3.9473 -4.5979 24 6 0.3196 -4.4821 -3.3640 25 6 0.7854 -3.8823 -2.2090 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 0.8900 30 1 1.6374 1.9702 0.8646 31 1 3.1288 1.4429 0.0487 32 1 1.7168 1.9421 -0.9133 33 1 3.6012 -3.5969 -0.7711 34 1 4.1589 -2.1184 -1.5903 35 1 4.1578 -0.2828 3.7859 36 1 4.0934 0.1726 0.8251 37 1 6.0228 -1.2676 -1.1847 38 1 5.9466 0.5473 -0.8663 39 1 6.5174 0.1440 1.5720 40 1 6.5936 -1.6710 1.2544 41 1 2.4973 -1.3211 -3.5830 42 1 1.6741 -2.3942 -5.6408 43 1 0.2759 -4.4162 -5.5004 44 1 -0.2940 -5.3688 -3.3025 45 1 0.5355 -4.3002 -1.2450 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428232799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:49 Heat of formation + Delta-G solvation = 25.758724 kcal Electronic energy + Delta-G solvation = -24482.022939 eV Core-core repulsion = 21273.128534 eV Total energy + Delta-G solvation = -3208.894405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.27689 -37.71175 -36.37469 -33.52481 -32.51541 -30.93074 -30.62650 -30.47373 -26.97757 -26.61804 -24.18983 -22.58555 -22.32611 -21.09595 -20.65368 -20.28973 -19.28153 -16.82889 -16.68062 -15.90081 -15.33583 -14.80867 -14.50319 -14.28808 -14.03619 -13.97537 -13.38180 -13.33884 -13.10591 -12.85616 -12.47786 -12.22012 -11.90731 -11.69528 -11.57740 -11.45842 -11.10518 -10.91270 -10.84384 -10.76740 -10.67187 -10.41722 -10.31318 -10.03373 -9.90368 -9.66162 -9.41593 -8.86481 -8.78067 -8.64669 -8.47374 -8.25592 -6.82234 -5.69921 -3.16928 1.61860 1.68054 3.37602 3.44400 3.45495 4.04277 4.41542 4.48794 5.11970 5.19039 5.21822 5.25799 5.35409 5.44748 5.56094 5.63666 5.73023 5.81414 5.84155 5.99477 6.04937 6.16950 6.17677 6.25260 6.29285 6.31613 6.31690 6.33700 6.39236 6.47466 6.58355 6.61901 6.66312 6.72038 6.75918 6.85340 6.91977 6.98043 7.04474 7.07417 7.28128 7.30320 7.73404 7.86103 8.14046 8.30209 9.25121 9.85933 10.33088 11.31426 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.005804 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.688721 B = 4822.872013 C = 5101.490706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.081 3.919 3 C -0.138 4.138 4 O -0.370 6.370 5 C 0.107 3.893 6 H 0.069 0.931 7 C 0.145 3.855 8 N -0.572 5.572 9 C -0.256 4.256 10 H 0.070 0.930 11 C 0.010 3.990 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 C 0.201 3.799 18 C -0.237 4.237 19 C -0.172 4.172 20 C -0.072 4.072 21 C -0.094 4.094 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.125 4.125 25 C -0.116 4.116 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.251 0.749 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 -0.868 -10.274 11.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.023 3.977 3 C -0.195 4.195 4 O -0.289 6.289 5 C 0.047 3.953 6 H 0.087 0.913 7 C 0.018 3.982 8 N -0.292 5.292 9 C -0.385 4.385 10 H 0.088 0.912 11 C -0.189 4.189 12 N -0.540 5.540 13 Si 0.727 3.273 14 H -0.217 1.217 15 H -0.219 1.219 16 H -0.208 1.208 17 C 0.094 3.906 18 C -0.275 4.275 19 C -0.210 4.210 20 C -0.073 4.073 21 C -0.112 4.112 22 C -0.145 4.145 23 C -0.151 4.151 24 C -0.143 4.143 25 C -0.134 4.134 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.143 0.857 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.279 -0.659 -10.249 11.548 hybrid contribution 0.022 -0.720 1.185 1.387 sum -5.257 -1.379 -9.064 10.568 Atomic orbital electron populations 1.22341 0.98178 1.01324 1.01086 1.22176 0.91353 0.93793 0.90333 1.21776 1.02444 0.94845 1.00459 1.87768 1.86412 1.17589 1.37172 1.21790 0.99452 0.81651 0.92456 0.91299 1.21196 0.91505 0.96718 0.88817 1.43459 1.62694 1.21387 1.01640 1.19207 1.42613 0.92868 0.83780 0.91178 1.24746 1.01655 0.95235 0.97280 1.69974 1.52964 1.06578 1.24442 0.86379 0.77654 0.79346 0.83937 1.21722 1.21858 1.20760 1.20811 0.85807 0.89431 0.94516 1.23344 1.10706 1.00062 0.93408 1.22787 1.03954 1.00619 0.93684 1.20230 0.96196 0.95240 0.95647 1.21029 0.99210 0.99431 0.91575 1.21124 0.98799 0.96377 0.98218 1.21037 0.99662 0.97041 0.97320 1.21028 1.00678 0.99979 0.92616 1.21050 0.97718 0.96136 0.98473 0.93152 0.93243 0.92504 0.88311 0.92202 0.91407 0.93578 0.93435 0.92971 0.93807 0.87911 0.90784 0.90838 0.91043 0.90631 0.85688 0.86616 0.86799 0.86587 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.43 37.16 0.35 -2.49 16 2 C 0.08 1.53 2.13 -26.73 -0.06 1.48 16 3 C -0.14 -2.41 9.30 37.16 0.35 -2.06 16 4 O -0.37 -7.10 8.75 -35.23 -0.31 -7.41 16 5 C 0.11 2.01 2.37 -27.89 -0.07 1.94 16 6 H 0.07 1.40 7.12 -51.93 -0.37 1.03 16 7 C 0.15 2.95 5.27 -4.04 -0.02 2.93 16 8 N -0.57 -13.30 2.00 -165.66 -0.33 -13.64 16 9 C -0.26 -6.54 9.65 -15.06 -0.15 -6.68 16 10 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 11 C 0.01 0.25 5.12 -17.43 -0.09 0.16 16 12 N -0.90 -23.68 10.17 55.49 0.56 -23.12 16 13 Si 0.90 21.08 29.57 -169.99 -5.03 16.05 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 17 C 0.20 4.61 3.41 -67.93 -0.23 4.38 16 18 C -0.24 -4.83 9.74 -26.73 -0.26 -5.09 16 19 C -0.17 -3.87 9.42 -26.73 -0.25 -4.12 16 20 C -0.07 -1.19 4.97 -104.63 -0.52 -1.71 16 21 C -0.09 -1.45 9.36 -39.58 -0.37 -1.82 16 22 C -0.13 -1.68 10.05 -39.58 -0.40 -2.07 16 23 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 24 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 25 C -0.12 -1.73 9.67 -39.58 -0.38 -2.11 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.82 7.76 -51.92 -0.40 0.42 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.10 2.26 6.76 -51.93 -0.35 1.91 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.28 6.06 -51.93 -0.31 0.96 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.05 1.04 6.68 -51.93 -0.35 0.70 16 35 H 0.25 6.62 8.32 -40.82 -0.34 6.28 16 36 H 0.10 2.51 4.22 -51.93 -0.22 2.29 16 37 H 0.07 1.48 7.33 -51.93 -0.38 1.10 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 41 H 0.13 1.94 7.77 -52.48 -0.41 1.54 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16 44 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 45 H 0.12 1.70 8.04 -52.49 -0.42 1.27 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -26.42 358.95 -10.00 -36.42 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.41 Total: 7.61 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -2.89 Total: -21.33 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.23 Total: -36.75 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.31 Total: -7.41 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -26.42 -10.00 -36.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428232799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.180 kcal (2) G-P(sol) polarization free energy of solvation -26.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds