Wall clock time and date at job start Tue Mar 31 2020 06:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 O 1.42896 * 109.47634 * 239.99634 * 2 1 3 5 5 C 1.42906 * 114.00095 * 275.63743 * 4 2 1 6 6 H 1.09002 * 109.47130 * 17.87348 * 5 4 2 7 7 C 1.52994 * 109.46527 * 257.87396 * 5 4 2 8 8 N 1.46500 * 109.47369 * 64.95847 * 7 5 4 9 9 C 1.36936 * 120.00134 * 85.74397 * 8 7 5 10 10 H 1.07998 * 120.00299 * 15.68391 * 9 8 7 11 11 C 1.38814 * 119.99671 * 195.68470 * 9 8 7 12 12 N 1.31615 * 120.00110 * 11.97918 * 11 9 8 13 13 Si 1.86801 * 119.99572 * 191.98356 * 11 9 8 14 14 H 1.48499 * 109.47383 * 89.99958 * 13 11 9 15 15 H 1.48504 * 109.46971 * 209.99988 * 13 11 9 16 16 H 1.48503 * 109.47046 * 329.99396 * 13 11 9 17 17 C 1.46502 * 119.99529 * 265.74331 * 8 7 5 18 18 C 1.53000 * 117.50151 * 313.94694 * 17 8 7 19 19 C 1.53000 * 117.49984 * 245.32208 * 17 8 7 20 20 C 1.50699 * 109.47050 * 137.87681 * 5 4 2 21 21 C 1.38231 * 120.00446 * 39.72411 * 20 5 4 22 22 C 1.38239 * 120.00156 * 179.81357 * 21 20 5 23 23 C 1.38235 * 119.99662 * 0.38932 * 22 21 20 24 24 C 1.38232 * 120.00222 * 359.86443 * 23 22 21 25 25 C 1.38234 * 119.99577 * 219.99634 * 20 5 4 26 26 H 1.09002 * 109.47313 * 60.00247 * 1 2 3 27 27 H 1.09010 * 109.46947 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47472 * 300.00071 * 1 2 3 29 29 H 1.09000 * 109.46795 * 119.99754 * 2 1 3 30 30 H 1.08995 * 109.47201 * 57.28559 * 3 2 1 31 31 H 1.08999 * 109.47205 * 177.28631 * 3 2 1 32 32 H 1.09003 * 109.46864 * 297.28946 * 3 2 1 33 33 H 1.09000 * 109.47190 * 184.95689 * 7 5 4 34 34 H 1.09004 * 109.47705 * 304.95218 * 7 5 4 35 35 H 0.97003 * 119.99839 * 184.97119 * 12 11 9 36 36 H 1.09002 * 115.54888 * 99.65991 * 17 8 7 37 37 H 1.08996 * 117.49720 * 0.02562 * 18 17 8 38 38 H 1.09000 * 117.49764 * 145.02404 * 18 17 8 39 39 H 1.09003 * 117.50200 * 214.97968 * 19 17 8 40 40 H 1.08996 * 117.49739 * 359.97438 * 19 17 8 41 41 H 1.08007 * 120.00085 * 359.97438 * 21 20 5 42 42 H 1.07998 * 120.00022 * 180.23110 * 22 21 20 43 43 H 1.08003 * 119.99727 * 179.83679 * 23 22 21 44 44 H 1.08003 * 119.99844 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.00216 * 359.97438 * 25 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0793 -2.0942 -1.0286 6 1 1.4671 -2.4090 -0.1834 7 6 3.5322 -2.5092 -0.7887 8 7 3.9885 -1.9702 0.4949 9 6 3.7523 -2.6640 1.6517 10 1 3.4659 -3.7044 1.6085 11 6 3.8809 -2.0298 2.8798 12 7 3.9957 -0.7199 2.9352 13 14 3.8911 -3.0359 4.4537 14 1 5.2863 -3.4209 4.7861 15 1 3.3234 -2.2267 5.5620 16 1 3.0715 -4.2597 4.2643 17 6 4.6975 -0.6890 0.5408 18 6 5.8152 -0.4632 -0.4792 19 6 6.1594 -0.7064 0.9916 20 6 1.5715 -2.7480 -2.2878 21 6 1.8871 -2.2102 -3.5215 22 6 1.4244 -2.8122 -4.6768 23 6 0.6395 -3.9473 -4.5979 24 6 0.3196 -4.4821 -3.3640 25 6 0.7854 -3.8823 -2.2090 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 0.8900 30 1 1.6374 1.9702 0.8646 31 1 3.1288 1.4429 0.0487 32 1 1.7168 1.9421 -0.9133 33 1 3.6012 -3.5969 -0.7711 34 1 4.1589 -2.1184 -1.5903 35 1 4.1578 -0.2828 3.7859 36 1 4.0934 0.1726 0.8251 37 1 6.0228 -1.2676 -1.1847 38 1 5.9466 0.5473 -0.8663 39 1 6.5174 0.1440 1.5720 40 1 6.5936 -1.6710 1.2544 41 1 2.4973 -1.3211 -3.5830 42 1 1.6741 -2.3942 -5.6408 43 1 0.2759 -4.4162 -5.5004 44 1 -0.2940 -5.3688 -3.3025 45 1 0.5355 -4.3002 -1.2450 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428232799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:49 Heat of formation + Delta-G solvation = 15.506829 kcal Electronic energy + Delta-G solvation = -24482.467495 eV Core-core repulsion = 21273.128534 eV Total energy + Delta-G solvation = -3209.338961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.56104 -39.13015 -38.06328 -35.09294 -34.27105 -32.58313 -31.95098 -31.62318 -28.54258 -28.05027 -25.96353 -24.13460 -23.43945 -22.83808 -21.98904 -21.79025 -21.02570 -18.61782 -17.96102 -17.34139 -16.79021 -16.58795 -16.01453 -15.70964 -15.45283 -15.39776 -15.09806 -15.00057 -14.25872 -14.15245 -13.76541 -13.69151 -13.39969 -13.25701 -13.00654 -12.95204 -12.78292 -12.62166 -12.41320 -12.36104 -12.15077 -12.01432 -11.86271 -11.70699 -11.58376 -11.26932 -11.18331 -10.64949 -10.38464 -10.13681 -9.72511 -9.61180 -8.68530 -7.67765 -5.15532 0.51604 0.60119 1.46726 1.50102 1.54891 2.54579 2.87300 3.03967 3.39375 3.51681 3.55634 4.06022 4.12969 4.22546 4.25839 4.29697 4.38217 4.45417 4.51940 4.57628 4.61639 4.64604 4.70511 4.78093 4.80233 4.82003 4.88395 4.93973 4.95945 5.03704 5.13762 5.17446 5.18793 5.25601 5.28111 5.44402 5.49226 5.53066 5.66325 5.68236 5.70778 5.82192 6.04137 6.21174 6.33887 6.62832 7.28377 7.96721 8.39873 9.30333 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.005804 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.688721 B = 4822.872013 C = 5101.490706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.083 3.917 3 C -0.131 4.131 4 O -0.374 6.374 5 C 0.123 3.877 6 H 0.044 0.956 7 C 0.146 3.854 8 N -0.579 5.579 9 C -0.260 4.260 10 H 0.064 0.936 11 C -0.029 4.029 12 N -0.908 5.908 13 Si 0.946 3.054 14 H -0.295 1.295 15 H -0.297 1.297 16 H -0.277 1.277 17 C 0.188 3.812 18 C -0.206 4.206 19 C -0.180 4.180 20 C -0.094 4.094 21 C -0.107 4.107 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.130 4.130 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.244 0.756 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.117 0.883 42 H 0.143 0.857 43 H 0.149 0.851 44 H 0.143 0.857 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -1.311 -12.613 14.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 C -0.188 4.188 4 O -0.293 6.293 5 C 0.062 3.938 6 H 0.062 0.938 7 C 0.020 3.980 8 N -0.300 5.300 9 C -0.390 4.390 10 H 0.082 0.918 11 C -0.226 4.226 12 N -0.554 5.554 13 Si 0.776 3.224 14 H -0.223 1.223 15 H -0.224 1.224 16 H -0.202 1.202 17 C 0.081 3.919 18 C -0.244 4.244 19 C -0.219 4.219 20 C -0.095 4.095 21 C -0.125 4.125 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.141 4.141 25 C -0.148 4.148 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.135 0.865 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.161 0.839 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.304 -1.117 -12.612 14.144 hybrid contribution 0.305 -0.632 1.817 1.947 sum -5.999 -1.749 -10.796 12.474 Atomic orbital electron populations 1.22237 0.96235 1.01288 1.02262 1.22075 0.92856 0.93994 0.88547 1.21711 1.01221 0.94117 1.01760 1.87749 1.86672 1.17841 1.37063 1.21451 0.97659 0.81519 0.93161 0.93819 1.21250 0.92773 0.96340 0.87643 1.43517 1.63210 1.21353 1.01897 1.19350 1.41930 0.92801 0.84882 0.91789 1.25235 1.02293 0.96005 0.99107 1.70111 1.53880 1.07231 1.24166 0.85596 0.77075 0.78373 0.81337 1.22275 1.22366 1.20234 1.20684 0.85816 0.88927 0.96449 1.23337 1.07481 1.01468 0.92147 1.22680 1.03895 0.99651 0.95654 1.20053 0.98196 0.96338 0.94891 1.21053 0.99833 0.99634 0.91996 1.21439 0.98066 0.96369 0.98466 1.21474 0.98227 0.96275 0.98329 1.21362 1.00189 1.00494 0.92070 1.21160 0.98114 0.96032 0.99498 0.91684 0.93911 0.91487 0.92643 0.91418 0.93189 0.91672 0.93825 0.92615 0.94564 0.89437 0.90167 0.88571 0.91083 0.92504 0.86464 0.83946 0.83365 0.83899 0.86554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.32 9.43 71.98 0.68 -4.64 16 2 C 0.08 3.19 2.13 30.59 0.07 3.25 16 3 C -0.13 -4.54 9.30 71.98 0.67 -3.87 16 4 O -0.37 -14.48 8.75 -148.98 -1.30 -15.79 16 5 C 0.12 4.70 2.37 29.85 0.07 4.77 16 6 H 0.04 1.87 7.12 -2.39 -0.02 1.85 16 7 C 0.15 6.08 5.27 86.38 0.45 6.54 16 8 N -0.58 -27.67 2.00 -678.04 -1.36 -29.03 16 9 C -0.26 -13.67 9.65 84.03 0.81 -12.86 16 10 H 0.06 3.37 7.86 -2.91 -0.02 3.35 16 11 C -0.03 -1.56 5.12 84.86 0.43 -1.13 16 12 N -0.91 -49.44 10.17 21.65 0.22 -49.22 16 13 Si 0.95 44.27 29.57 68.60 2.03 46.29 16 14 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 15 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 C 0.19 8.78 3.41 44.99 0.15 8.93 16 18 C -0.21 -8.26 9.74 30.60 0.30 -7.96 16 19 C -0.18 -8.22 9.42 30.60 0.29 -7.93 16 20 C -0.09 -3.06 4.97 -19.87 -0.10 -3.16 16 21 C -0.11 -3.14 9.36 22.27 0.21 -2.93 16 22 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 23 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 24 C -0.12 -2.85 10.05 22.27 0.22 -2.62 16 25 C -0.13 -3.77 9.67 22.27 0.22 -3.55 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.04 1.43 7.76 -2.38 -0.02 1.41 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 2.64 6.76 -2.39 -0.02 2.63 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.05 1.90 6.06 -2.39 -0.01 1.89 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 33 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16 34 H 0.06 2.24 6.68 -2.39 -0.02 2.23 16 35 H 0.24 13.24 8.32 -92.71 -0.77 12.46 16 36 H 0.09 4.40 4.22 -2.39 -0.01 4.39 16 37 H 0.08 3.12 7.33 -2.39 -0.02 3.10 16 38 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.12 3.55 7.77 -2.91 -0.02 3.53 16 42 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 44 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 45 H 0.12 3.33 8.04 -2.91 -0.02 3.31 16 Total: -1.00 -57.63 358.95 5.45 -52.18 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.95 Total: 27.83 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 4.92 Total: -32.27 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -1.14 Total: -78.25 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.30 Total: -15.79 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -57.63 5.45 -52.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428232799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.685 kcal (2) G-P(sol) polarization free energy of solvation -57.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds