Wall clock time and date at job start Tue Mar 31 2020 06:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47233 * 2 1 4 4 O 1.42901 * 109.46842 * 180.02562 * 3 2 1 5 5 C 1.35902 * 116.99886 * 180.02562 * 4 3 2 6 6 C 1.38752 * 120.05259 * 0.02562 * 5 4 3 7 7 C 1.38122 * 119.94179 * 179.97438 * 6 5 4 8 8 C 1.38289 * 120.05702 * 359.74434 * 7 6 5 9 9 C 1.38244 * 120.10903 * 0.50914 * 8 7 6 10 10 C 1.50701 * 119.97212 * 179.76764 * 9 8 7 11 11 N 1.46906 * 109.47272 * 269.72515 * 10 9 8 12 12 C 1.46893 * 111.00098 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47250 * 185.37571 * 12 11 10 14 14 C 1.50701 * 115.55139 * 294.80834 * 13 12 11 15 15 H 1.07998 * 119.99931 * 95.20118 * 14 13 12 16 16 C 1.37881 * 119.99675 * 274.92507 * 14 13 12 17 17 N 1.31509 * 120.00118 * 355.41870 * 16 14 13 18 18 Si 1.86797 * 119.99851 * 175.42112 * 16 14 13 19 19 H 1.48500 * 109.47305 * 59.99777 * 18 16 14 20 20 H 1.48502 * 109.46877 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47169 * 299.99984 * 18 16 14 22 22 C 1.53005 * 117.49771 * 80.47079 * 13 12 11 23 23 C 1.52998 * 117.50158 * 149.12935 * 13 12 11 24 24 C 1.38163 * 120.05770 * 359.49225 * 9 8 7 25 25 H 1.09003 * 109.47364 * 59.99835 * 1 2 3 26 26 H 1.09002 * 109.47409 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47090 * 299.99946 * 1 2 3 28 28 H 1.09007 * 109.47090 * 240.00054 * 2 1 3 29 29 H 1.09003 * 109.47364 * 120.00165 * 2 1 3 30 30 H 1.08997 * 109.47088 * 60.00114 * 3 2 1 31 31 H 1.08993 * 109.47093 * 299.99569 * 3 2 1 32 32 H 1.08002 * 120.03437 * 359.95847 * 6 5 4 33 33 H 1.08003 * 119.97538 * 180.02562 * 7 6 5 34 34 H 1.08002 * 119.94892 * 180.27850 * 8 7 6 35 35 H 1.08998 * 109.47382 * 149.72556 * 10 9 8 36 36 H 1.08995 * 109.47248 * 29.72091 * 10 9 8 37 37 H 1.00901 * 110.99671 * 303.95517 * 11 10 9 38 38 H 1.09004 * 109.46845 * 65.38026 * 12 11 10 39 39 H 1.08997 * 109.47456 * 305.38043 * 12 11 10 40 40 H 0.96998 * 120.00611 * 185.00609 * 17 16 14 41 41 H 1.08998 * 117.50096 * 215.00821 * 22 13 12 42 42 H 1.08999 * 117.49296 * 0.02838 * 22 13 12 43 43 H 1.09004 * 117.49634 * 359.97438 * 23 13 12 44 44 H 1.08994 * 117.49846 * 144.97788 * 23 13 12 45 45 H 1.07995 * 120.02962 * 180.23022 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6533 -0.0001 6 6 3.3315 3.8177 0.0014 7 6 3.9610 5.0471 0.0024 8 6 5.3420 5.1181 0.0072 9 6 6.0960 3.9594 0.0004 10 6 7.6009 4.0405 0.0004 11 7 8.0898 4.0680 -1.3847 12 6 9.5560 4.1476 -1.4239 13 6 10.0195 4.3092 -2.8731 14 6 9.7370 3.1393 -3.7801 15 1 8.8471 3.1330 -4.3920 16 6 10.6175 2.0796 -3.8329 17 7 11.7472 2.1292 -3.1614 18 14 10.2058 0.5735 -4.8583 19 1 10.0389 0.9723 -6.2789 20 1 11.3076 -0.4162 -4.7487 21 1 8.9440 -0.0329 -4.3629 22 6 9.9508 5.7099 -3.4847 23 6 11.3061 5.0995 -3.1194 24 6 5.4712 2.7272 -0.0006 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 2.2528 3.7628 0.0016 33 1 3.3741 5.9538 0.0040 34 1 5.8324 6.0804 0.0125 35 1 8.0116 3.1709 0.5134 36 1 7.9159 4.9482 0.5149 37 1 7.7567 3.2680 -1.9016 38 1 9.9807 3.2347 -1.0063 39 1 9.8892 5.0043 -0.8382 40 1 12.3990 1.4171 -3.2553 41 1 9.7013 5.7853 -4.5431 42 1 9.5759 6.5164 -2.8545 43 1 11.8223 5.5048 -2.2490 44 1 11.9485 4.7730 -3.9372 45 1 6.0607 1.8223 -0.0022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430024081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:41 Heat of formation + Delta-G solvation = -3.381918 kcal Electronic energy + Delta-G solvation = -22245.210425 eV Core-core repulsion = 19035.052386 eV Total energy + Delta-G solvation = -3210.158039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13290 -37.94492 -36.77641 -34.50227 -34.01161 -31.86460 -30.93989 -29.90079 -26.89196 -26.25347 -25.20086 -23.22788 -22.35554 -21.95493 -20.89031 -20.57820 -19.04237 -17.71518 -16.44371 -16.19183 -15.91980 -15.84729 -14.76924 -14.61228 -14.39802 -14.34486 -13.97186 -13.74449 -13.66649 -13.14798 -12.65094 -12.53027 -12.41878 -12.40266 -11.85478 -11.52721 -11.48418 -11.32895 -11.24409 -11.08839 -10.88729 -10.85757 -10.76455 -10.61854 -10.42061 -10.04381 -9.31724 -8.81200 -8.76305 -8.35187 -8.10335 -7.98103 -7.48620 -5.97564 -4.04903 1.42110 1.58307 3.09716 3.32788 3.37589 3.40854 3.86211 4.43537 4.57126 4.58111 4.85594 4.88786 4.91102 5.07257 5.10434 5.11030 5.24882 5.30515 5.32235 5.47159 5.53451 5.60752 5.63167 5.72473 5.74304 5.82983 5.89164 6.02185 6.16716 6.24024 6.38153 6.51520 6.53614 6.60694 6.80181 6.86336 6.87805 6.90426 6.97162 7.25188 7.46301 7.54678 7.65296 7.92353 7.99711 8.27311 8.54846 8.98712 9.60845 11.09525 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.003620 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.262158 B = 7731.882843 C = 9173.646896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.317 6.317 5 C 0.127 3.873 6 C -0.216 4.216 7 C -0.084 4.084 8 C -0.135 4.135 9 C -0.029 4.029 10 C 0.093 3.907 11 N -0.674 5.674 12 C 0.105 3.895 13 C 0.047 3.953 14 C -0.493 4.493 15 H 0.059 0.941 16 C 0.070 3.930 17 N -0.881 5.881 18 Si 0.887 3.113 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.201 4.201 23 C -0.156 4.156 24 C -0.145 4.145 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.349 0.651 38 H 0.031 0.969 39 H 0.040 0.960 40 H 0.259 0.741 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.507 0.683 9.069 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.016 4.016 4 O -0.232 6.232 5 C 0.082 3.918 6 C -0.235 4.235 7 C -0.103 4.103 8 C -0.154 4.154 9 C -0.030 4.030 10 C -0.036 4.036 11 N -0.306 5.306 12 C -0.023 4.023 13 C 0.047 3.953 14 C -0.531 4.531 15 H 0.077 0.923 16 C -0.133 4.133 17 N -0.518 5.518 18 Si 0.714 3.286 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.238 4.238 23 C -0.194 4.194 24 C -0.165 4.165 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.168 0.832 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.347 1.015 9.097 20.504 hybrid contribution -0.036 -1.583 -0.362 1.624 sum -18.383 -0.568 8.735 20.360 Atomic orbital electron populations 1.21688 0.94358 1.02463 1.02139 1.21491 0.95913 0.95029 1.03824 1.22821 0.78888 0.98602 1.01239 1.86054 1.20929 1.27298 1.88872 1.18907 0.92145 0.83886 0.96890 1.21133 0.99535 0.92551 1.10234 1.20885 0.94660 0.96713 0.97993 1.20949 0.93317 0.98303 1.02821 1.19723 0.95897 0.91927 0.95449 1.20915 0.89223 1.00778 0.92701 1.60505 1.11513 1.49105 1.09439 1.21481 0.85136 0.98125 0.97593 1.18718 0.96003 0.89242 0.91364 1.20447 1.07809 1.01027 1.23792 0.92276 1.24997 0.95136 0.98020 0.95166 1.69992 1.07437 1.33383 1.40962 0.86751 0.77979 0.82980 0.80849 1.20297 1.21407 1.20158 1.22866 1.02589 0.98632 0.99713 1.22501 0.90760 1.04792 1.01346 1.20361 0.91243 0.98477 1.06384 0.92353 0.91772 0.92454 0.90711 0.90860 0.92264 0.92131 0.86054 0.86080 0.85771 0.94916 0.90698 0.83181 0.95055 0.94171 0.93096 0.90984 0.91775 0.92360 0.90009 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.15 0.37 -0.52 16 2 C -0.13 -1.01 6.30 -26.73 -0.17 -1.18 16 3 C 0.06 0.58 4.74 37.16 0.18 0.75 16 4 O -0.32 -4.31 10.14 -19.43 -0.20 -4.51 16 5 C 0.13 1.81 6.69 -39.22 -0.26 1.55 16 6 C -0.22 -2.69 9.04 -39.43 -0.36 -3.04 16 7 C -0.08 -1.04 10.04 -39.61 -0.40 -1.43 16 8 C -0.14 -1.87 9.70 -39.56 -0.38 -2.26 16 9 C -0.03 -0.45 5.39 -104.65 -0.56 -1.01 16 10 C 0.09 1.53 5.80 -4.97 -0.03 1.50 16 11 N -0.67 -13.41 6.46 -115.06 -0.74 -14.15 16 12 C 0.11 2.36 5.54 -3.83 -0.02 2.33 16 13 C 0.05 1.18 1.65 -155.66 -0.26 0.92 16 14 C -0.49 -13.38 8.33 -34.44 -0.29 -13.67 16 15 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 16 C 0.07 1.90 5.43 -17.82 -0.10 1.81 16 17 N -0.88 -24.95 12.65 55.43 0.70 -24.25 16 18 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.20 -4.57 9.96 -26.69 -0.27 -4.84 16 23 C -0.16 -3.77 9.14 -26.69 -0.24 -4.01 16 24 C -0.15 -2.24 9.64 -39.43 -0.38 -2.62 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 32 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 33 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 37 H 0.35 7.42 8.30 -39.29 -0.33 7.10 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 40 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 41 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 45 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -29.01 373.31 -10.56 -39.57 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.75 Total: 7.26 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -3.17 Total: -25.73 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: -0.04 Total: -38.40 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.20 Total: -4.51 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.01 -10.56 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430024081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.185 kcal (2) G-P(sol) polarization free energy of solvation -29.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds