Wall clock time and date at job start Tue Mar 31 2020 06:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47233 * 2 1 4 4 O 1.42901 * 109.46842 * 180.02562 * 3 2 1 5 5 C 1.35902 * 116.99886 * 180.02562 * 4 3 2 6 6 C 1.38752 * 120.05259 * 0.02562 * 5 4 3 7 7 C 1.38122 * 119.94179 * 179.97438 * 6 5 4 8 8 C 1.38289 * 120.05702 * 359.74434 * 7 6 5 9 9 C 1.38244 * 120.10903 * 0.50914 * 8 7 6 10 10 C 1.50701 * 119.97212 * 179.76764 * 9 8 7 11 11 N 1.46906 * 109.47272 * 269.72515 * 10 9 8 12 12 C 1.46893 * 111.00098 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47250 * 185.37571 * 12 11 10 14 14 C 1.50701 * 115.55139 * 294.80834 * 13 12 11 15 15 H 1.07998 * 119.99931 * 95.20118 * 14 13 12 16 16 C 1.37881 * 119.99675 * 274.92507 * 14 13 12 17 17 N 1.31509 * 120.00118 * 355.41870 * 16 14 13 18 18 Si 1.86797 * 119.99851 * 175.42112 * 16 14 13 19 19 H 1.48500 * 109.47305 * 59.99777 * 18 16 14 20 20 H 1.48502 * 109.46877 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47169 * 299.99984 * 18 16 14 22 22 C 1.53005 * 117.49771 * 80.47079 * 13 12 11 23 23 C 1.52998 * 117.50158 * 149.12935 * 13 12 11 24 24 C 1.38163 * 120.05770 * 359.49225 * 9 8 7 25 25 H 1.09003 * 109.47364 * 59.99835 * 1 2 3 26 26 H 1.09002 * 109.47409 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47090 * 299.99946 * 1 2 3 28 28 H 1.09007 * 109.47090 * 240.00054 * 2 1 3 29 29 H 1.09003 * 109.47364 * 120.00165 * 2 1 3 30 30 H 1.08997 * 109.47088 * 60.00114 * 3 2 1 31 31 H 1.08993 * 109.47093 * 299.99569 * 3 2 1 32 32 H 1.08002 * 120.03437 * 359.95847 * 6 5 4 33 33 H 1.08003 * 119.97538 * 180.02562 * 7 6 5 34 34 H 1.08002 * 119.94892 * 180.27850 * 8 7 6 35 35 H 1.08998 * 109.47382 * 149.72556 * 10 9 8 36 36 H 1.08995 * 109.47248 * 29.72091 * 10 9 8 37 37 H 1.00901 * 110.99671 * 303.95517 * 11 10 9 38 38 H 1.09004 * 109.46845 * 65.38026 * 12 11 10 39 39 H 1.08997 * 109.47456 * 305.38043 * 12 11 10 40 40 H 0.96998 * 120.00611 * 185.00609 * 17 16 14 41 41 H 1.08998 * 117.50096 * 215.00821 * 22 13 12 42 42 H 1.08999 * 117.49296 * 0.02838 * 22 13 12 43 43 H 1.09004 * 117.49634 * 359.97438 * 23 13 12 44 44 H 1.08994 * 117.49846 * 144.97788 * 23 13 12 45 45 H 1.07995 * 120.02962 * 180.23022 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6533 -0.0001 6 6 3.3315 3.8177 0.0014 7 6 3.9610 5.0471 0.0024 8 6 5.3420 5.1181 0.0072 9 6 6.0960 3.9594 0.0004 10 6 7.6009 4.0405 0.0004 11 7 8.0898 4.0680 -1.3847 12 6 9.5560 4.1476 -1.4239 13 6 10.0195 4.3092 -2.8731 14 6 9.7370 3.1393 -3.7801 15 1 8.8471 3.1330 -4.3920 16 6 10.6175 2.0796 -3.8329 17 7 11.7472 2.1292 -3.1614 18 14 10.2058 0.5735 -4.8583 19 1 10.0389 0.9723 -6.2789 20 1 11.3076 -0.4162 -4.7487 21 1 8.9440 -0.0329 -4.3629 22 6 9.9508 5.7099 -3.4847 23 6 11.3061 5.0995 -3.1194 24 6 5.4712 2.7272 -0.0006 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 2.2528 3.7628 0.0016 33 1 3.3741 5.9538 0.0040 34 1 5.8324 6.0804 0.0125 35 1 8.0116 3.1709 0.5134 36 1 7.9159 4.9482 0.5149 37 1 7.7567 3.2680 -1.9016 38 1 9.9807 3.2347 -1.0063 39 1 9.8892 5.0043 -0.8382 40 1 12.3990 1.4171 -3.2553 41 1 9.7013 5.7853 -4.5431 42 1 9.5759 6.5164 -2.8545 43 1 11.8223 5.5048 -2.2490 44 1 11.9485 4.7730 -3.9372 45 1 6.0607 1.8223 -0.0022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430024081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:40 Heat of formation + Delta-G solvation = -18.352365 kcal Electronic energy + Delta-G solvation = -22245.859592 eV Core-core repulsion = 19035.052386 eV Total energy + Delta-G solvation = -3210.807206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13464 -39.12961 -38.44833 -35.88466 -34.78698 -33.94894 -32.15257 -30.93874 -28.10873 -27.49882 -26.95545 -24.66205 -23.42659 -22.83958 -22.68230 -21.62462 -20.94485 -18.78888 -17.88387 -17.23613 -17.19760 -16.94085 -16.63062 -16.16044 -15.82713 -15.45348 -15.27995 -15.00079 -14.68014 -14.45885 -14.23268 -13.56731 -13.41074 -13.25076 -13.08440 -13.04132 -12.97638 -12.83534 -12.72140 -12.36393 -12.30879 -12.19236 -12.07724 -11.94129 -11.65461 -11.52156 -11.21020 -10.81624 -10.36790 -10.01624 -9.75929 -9.14616 -9.10810 -8.07559 -6.19809 0.35444 0.53080 1.40727 1.41996 1.48899 2.21976 2.42651 2.77758 3.19470 3.42902 3.76822 3.86869 3.89364 3.93599 4.02357 4.13399 4.25953 4.31368 4.36301 4.44021 4.51223 4.54436 4.57514 4.64762 4.71313 4.74725 4.79121 4.86535 5.00099 5.03811 5.09990 5.10631 5.11075 5.16390 5.32150 5.33177 5.36605 5.50543 5.65897 5.72649 5.73536 5.81823 5.86128 6.32343 6.48839 6.49687 6.57017 6.89170 7.48286 8.98806 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.003620 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.262158 B = 7731.882843 C = 9173.646896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.052 3.948 4 O -0.339 6.339 5 C 0.116 3.884 6 C -0.211 4.211 7 C -0.078 4.078 8 C -0.143 4.143 9 C -0.043 4.043 10 C 0.097 3.903 11 N -0.671 5.671 12 C 0.119 3.881 13 C 0.023 3.977 14 C -0.505 4.505 15 H 0.049 0.951 16 C 0.026 3.974 17 N -0.907 5.907 18 Si 0.944 3.056 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.178 4.178 23 C -0.161 4.161 24 C -0.169 4.169 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.136 0.864 35 H 0.026 0.974 36 H 0.089 0.911 37 H 0.338 0.662 38 H 0.001 0.999 39 H 0.055 0.945 40 H 0.258 0.742 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.970 1.697 9.416 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.022 4.022 4 O -0.253 6.253 5 C 0.071 3.929 6 C -0.229 4.229 7 C -0.096 4.096 8 C -0.162 4.162 9 C -0.044 4.044 10 C -0.032 4.032 11 N -0.301 5.301 12 C -0.010 4.010 13 C 0.022 3.978 14 C -0.543 4.543 15 H 0.068 0.932 16 C -0.174 4.174 17 N -0.545 5.545 18 Si 0.770 3.230 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.215 4.215 23 C -0.199 4.199 24 C -0.188 4.188 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.153 0.847 35 H 0.045 0.955 36 H 0.108 0.892 37 H 0.155 0.845 38 H 0.019 0.981 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -20.828 2.037 9.447 22.961 hybrid contribution 0.646 -1.887 -0.451 2.045 sum -20.182 0.150 8.996 22.097 Atomic orbital electron populations 1.21671 0.92444 1.03216 1.02843 1.21522 0.97452 0.94052 1.03166 1.23122 0.76937 0.99846 1.02344 1.86038 1.23137 1.27347 1.88822 1.19039 0.91935 0.84923 0.96986 1.21478 1.00936 0.91835 1.08678 1.21277 0.94214 0.97955 0.96167 1.21158 0.94250 0.98050 1.02717 1.19614 0.95033 0.92633 0.97097 1.20931 0.90406 1.01163 0.90691 1.60502 1.09765 1.48367 1.11509 1.21228 0.86542 0.97200 0.96042 1.18877 0.96824 0.89635 0.92461 1.20679 1.07358 1.02220 1.23999 0.93237 1.25631 0.95053 1.00386 0.96355 1.70094 1.08157 1.34096 1.42192 0.85837 0.77710 0.79913 0.79517 1.19862 1.21146 1.19878 1.22839 1.00888 0.97994 0.99808 1.22408 0.90898 1.05431 1.01137 1.20382 0.92241 0.98156 1.08048 0.91846 0.91056 0.91519 0.91725 0.91252 0.90694 0.91266 0.83228 0.82698 0.84658 0.95543 0.89248 0.84462 0.98122 0.92653 0.93254 0.91296 0.89420 0.91028 0.92487 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.87 6.30 30.59 0.19 -1.67 16 3 C 0.05 0.92 4.74 71.98 0.34 1.26 16 4 O -0.34 -9.04 10.14 -92.44 -0.94 -9.98 16 5 C 0.12 3.23 6.69 22.51 0.15 3.38 16 6 C -0.21 -4.69 9.04 22.37 0.20 -4.49 16 7 C -0.08 -1.68 10.04 22.25 0.22 -1.45 16 8 C -0.14 -3.67 9.70 22.28 0.22 -3.46 16 9 C -0.04 -1.31 5.39 -19.88 -0.11 -1.41 16 10 C 0.10 3.17 5.80 85.56 0.50 3.67 16 11 N -0.67 -26.74 6.46 -517.94 -3.34 -30.09 16 12 C 0.12 5.35 5.54 86.31 0.48 5.83 16 13 C 0.02 1.13 1.65 -52.93 -0.09 1.04 16 14 C -0.50 -27.77 8.33 25.60 0.21 -27.56 16 15 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 16 C 0.03 1.43 5.43 84.66 0.46 1.89 16 17 N -0.91 -52.35 12.65 21.45 0.27 -52.08 16 18 Si 0.94 44.12 29.54 68.60 2.03 46.14 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 22 C -0.18 -7.91 9.96 30.62 0.30 -7.61 16 23 C -0.16 -7.76 9.14 30.62 0.28 -7.48 16 24 C -0.17 -5.29 9.64 22.37 0.22 -5.07 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 31 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 32 H 0.15 2.41 6.30 -2.91 -0.02 2.39 16 33 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.03 0.89 8.08 -2.39 -0.02 0.87 16 36 H 0.09 2.64 8.08 -2.39 -0.02 2.62 16 37 H 0.34 14.71 8.30 -89.69 -0.74 13.96 16 38 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 39 H 0.06 2.28 8.08 -2.39 -0.02 2.27 16 40 H 0.26 14.35 8.32 -92.71 -0.77 13.58 16 41 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 43 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 45 H 0.11 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -62.41 373.31 2.51 -59.90 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.21 Total: 29.96 kcal Atomic # 6 Polarization: -48.14 SS G_CDS: 4.29 Total: -43.85 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -3.07 Total: -82.17 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.94 Total: -9.98 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -62.41 2.51 -59.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430024081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.544 kcal (2) G-P(sol) polarization free energy of solvation -62.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds