Wall clock time and date at job start Tue Mar 31 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47227 * 2 1 4 4 H 1.09000 * 109.47130 * 305.77666 * 3 2 1 5 5 C 1.52995 * 109.47104 * 65.77351 * 3 2 1 6 6 C 1.50708 * 109.46678 * 58.37844 * 5 3 2 7 7 O 1.21284 * 120.00221 * 5.61204 * 6 5 3 8 8 N 1.34781 * 119.99600 * 185.61003 * 6 5 3 9 9 C 1.39936 * 119.99948 * 174.95120 * 8 6 5 10 10 C 1.39291 * 119.94876 * 145.99777 * 9 8 6 11 11 C 1.38483 * 120.42802 * 179.97438 * 10 9 8 12 12 C 1.37685 * 120.32510 * 0.02562 * 11 10 9 13 13 C 1.40748 * 119.88307 * 359.97438 * 12 11 10 14 14 C 1.41400 * 120.21052 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00340 * 146.27485 * 14 13 12 16 16 C 1.39939 * 120.00181 * 326.28049 * 14 13 12 17 17 N 1.30832 * 119.99757 * 357.07275 * 16 14 13 18 18 Si 1.86797 * 120.00114 * 177.07750 * 16 14 13 19 19 H 1.48502 * 109.46962 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47119 * 119.99719 * 18 16 14 21 21 H 1.48501 * 109.47281 * 239.99761 * 18 16 14 22 22 C 1.38247 * 119.94529 * 325.72737 * 9 8 6 23 23 C 1.53002 * 109.47199 * 185.77803 * 3 2 1 24 24 C 1.52999 * 109.47199 * 179.97438 * 23 3 2 25 25 C 1.53002 * 109.47204 * 59.99885 * 23 3 2 26 26 H 1.08993 * 109.47529 * 63.97921 * 1 2 3 27 27 H 1.09001 * 109.47281 * 183.98563 * 1 2 3 28 28 H 1.09005 * 109.46492 * 303.97407 * 1 2 3 29 29 H 1.09004 * 109.46823 * 239.99937 * 2 1 3 30 30 H 1.08998 * 109.47276 * 120.00514 * 2 1 3 31 31 H 1.09001 * 109.47195 * 178.37476 * 5 3 2 32 32 H 1.08996 * 109.47551 * 298.38117 * 5 3 2 33 33 H 0.97005 * 120.00192 * 354.94866 * 8 6 5 34 34 H 1.07998 * 119.78309 * 0.02562 * 10 9 8 35 35 H 1.08004 * 119.84101 * 180.02562 * 11 10 9 36 36 H 1.07994 * 120.06273 * 179.97438 * 12 11 10 37 37 H 0.96995 * 119.99627 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.15949 * 359.97438 * 22 9 8 39 39 H 1.09000 * 109.46968 * 299.99962 * 23 3 2 40 40 H 1.09000 * 109.47130 * 299.99863 * 24 23 3 41 41 H 1.09002 * 109.47052 * 59.99585 * 24 23 3 42 42 H 1.09000 * 109.47022 * 180.02562 * 24 23 3 43 43 H 1.09000 * 109.47344 * 180.02562 * 25 23 3 44 44 H 1.09003 * 109.46961 * 300.00532 * 25 23 3 45 45 H 1.09000 * 109.47095 * 60.00155 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5947 1.9853 -0.8337 5 6 1.6520 2.1206 1.3154 6 6 2.2347 1.3471 2.4702 7 8 2.9782 0.4123 2.2603 8 7 1.9294 1.6944 3.7362 9 6 2.3840 0.9137 4.8049 10 6 2.7224 1.5183 6.0132 11 6 3.1728 0.7552 7.0774 12 6 3.2917 -0.6108 6.9522 13 6 2.9535 -1.2357 5.7372 14 6 3.0734 -2.6380 5.6008 15 1 2.3759 -3.1819 4.9813 16 6 4.0959 -3.3210 6.2688 17 7 4.9752 -2.6560 6.9732 18 14 4.2055 -5.1823 6.1544 19 1 3.1010 -5.6917 5.3025 20 1 5.5091 -5.5655 5.5554 21 1 4.0938 -5.7692 7.5140 22 6 2.4913 -0.4571 4.6614 23 6 3.5631 1.4449 -0.1452 24 6 4.0731 2.8874 -0.1459 25 6 3.9511 0.7668 -1.4607 26 1 -0.3634 0.4508 -0.9234 27 1 -0.3634 -1.0252 0.0714 28 1 -0.3632 0.5743 0.8523 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0402 3.1391 1.3275 32 1 0.5660 2.1446 1.4054 33 1 1.3946 2.4856 3.9066 34 1 2.6320 2.5891 6.1211 35 1 3.4322 1.2338 8.0102 36 1 3.6438 -1.2018 7.7847 37 1 5.6842 -3.1295 7.4359 38 1 2.2246 -0.9273 3.7264 39 1 4.0084 0.9021 0.6885 40 1 3.6278 3.4299 -0.9799 41 1 3.7966 3.3709 0.7911 42 1 5.1581 2.8891 -0.2498 43 1 5.0362 0.7681 -1.5640 44 1 3.5877 -0.2609 -1.4607 45 1 3.5058 1.3096 -2.2945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456737575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:27 Heat of formation + Delta-G solvation = -40.294903 kcal Electronic energy + Delta-G solvation = -23540.792596 eV Core-core repulsion = 20329.033890 eV Total energy + Delta-G solvation = -3211.758706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17684 -37.88417 -36.45918 -34.30932 -32.97063 -32.72235 -30.14765 -29.77039 -27.87083 -27.00151 -25.28123 -24.78307 -21.88096 -21.12012 -20.83758 -19.91155 -19.13384 -17.56054 -16.40672 -15.78210 -15.50658 -15.02321 -14.73589 -14.47280 -14.39228 -13.96665 -13.57790 -13.28428 -12.87302 -12.82827 -12.68774 -12.23946 -12.12864 -11.95971 -11.78330 -11.67716 -11.50513 -11.29225 -11.23757 -11.11964 -10.77831 -10.55569 -10.50749 -10.38239 -10.14681 -10.07099 -9.96811 -9.68166 -9.23523 -9.00878 -8.69285 -7.34593 -6.84158 -6.57277 -4.32686 2.64823 2.86631 3.13883 3.18970 3.21937 3.41679 3.72763 4.03767 4.73824 4.78986 4.85783 4.94261 5.20906 5.31077 5.45480 5.51297 5.56459 5.59859 5.62046 5.71960 5.72683 5.83307 5.92086 5.96857 6.07516 6.09594 6.14859 6.24992 6.32893 6.38368 6.41205 6.53886 6.67836 6.72090 6.94452 7.04400 7.08797 7.12530 7.32932 7.60082 7.76301 7.99920 8.14122 8.22128 8.32462 8.69990 8.81799 9.00244 9.02220 10.36192 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.004624 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.800056 B = 6054.070848 C = 6856.184012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.139 4.139 3 C -0.059 4.059 4 H 0.068 0.932 5 C -0.142 4.142 6 C 0.504 3.496 7 O -0.505 6.505 8 N -0.673 5.673 9 C 0.147 3.853 10 C -0.253 4.253 11 C -0.098 4.098 12 C -0.160 4.160 13 C 0.117 3.883 14 C -0.461 4.461 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.811 5.811 18 Si 0.912 3.088 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.274 1.274 22 C -0.200 4.200 23 C -0.111 4.111 24 C -0.146 4.146 25 C -0.144 4.144 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.396 0.604 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.277 0.723 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 8.741 -11.019 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.176 4.176 3 C -0.077 4.077 4 H 0.086 0.914 5 C -0.182 4.182 6 C 0.291 3.709 7 O -0.380 6.380 8 N -0.317 5.317 9 C 0.055 3.945 10 C -0.275 4.275 11 C -0.117 4.117 12 C -0.180 4.180 13 C 0.115 3.885 14 C -0.492 4.492 15 H 0.093 0.907 16 C -0.143 4.143 17 N -0.438 5.438 18 Si 0.737 3.263 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.221 4.221 23 C -0.129 4.129 24 C -0.204 4.204 25 C -0.201 4.201 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.230 0.770 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.139 0.861 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.956 8.018 -11.085 14.551 hybrid contribution -0.067 -0.208 0.078 0.231 sum -5.023 7.811 -11.007 14.401 Atomic orbital electron populations 1.21827 0.96765 1.01439 1.00886 1.21923 0.94852 0.96571 1.04234 1.20906 0.95810 0.96287 0.94738 0.91409 1.21871 1.01925 1.00350 0.94079 1.20651 0.81386 0.85175 0.83692 1.90634 1.34609 1.28840 1.83883 1.43583 1.53588 1.28980 1.05503 1.17457 1.00156 0.90411 0.86494 1.20107 1.15280 0.97193 0.94880 1.20510 1.00034 0.94660 0.96507 1.21447 1.05051 0.92998 0.98496 1.17530 0.88128 0.93309 0.89581 1.19521 1.12031 0.92179 1.25450 0.90692 1.25837 0.94694 1.00603 0.93160 1.69784 1.11848 1.37315 1.24824 0.86199 0.79018 0.82357 0.78710 1.18594 1.20040 1.19968 1.21035 1.11442 0.90690 0.98957 1.21486 0.95120 0.96403 0.99936 1.21885 1.00740 0.96788 1.00946 1.21850 1.00690 1.00700 0.96861 0.93464 0.92986 0.93013 0.92016 0.88863 0.89069 0.89275 0.77031 0.89349 0.89056 0.86067 0.91253 0.87509 0.87493 0.93385 0.92976 0.93042 0.93208 0.92374 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.77 37.16 0.36 -1.40 16 2 C -0.14 -1.85 4.95 -26.73 -0.13 -1.98 16 3 C -0.06 -0.70 1.71 -90.62 -0.15 -0.86 16 4 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.14 -1.69 4.92 -27.88 -0.14 -1.82 16 6 C 0.50 8.47 6.90 -10.98 -0.08 8.40 16 7 O -0.50 -10.48 9.15 5.55 0.05 -10.43 16 8 N -0.67 -11.63 5.34 -9.90 -0.05 -11.68 16 9 C 0.15 3.27 6.26 -83.76 -0.52 2.75 16 10 C -0.25 -5.55 9.97 -39.10 -0.39 -5.94 16 11 C -0.10 -2.30 10.02 -39.69 -0.40 -2.69 16 12 C -0.16 -4.22 8.64 -38.84 -0.34 -4.56 16 13 C 0.12 3.23 5.52 -106.85 -0.59 2.64 16 14 C -0.46 -12.73 9.05 -37.74 -0.34 -13.08 16 15 H 0.07 2.02 7.85 -52.49 -0.41 1.60 16 16 C 0.07 1.89 5.35 -17.34 -0.09 1.79 16 17 N -0.81 -21.80 10.80 55.55 0.60 -21.20 16 18 Si 0.91 19.64 29.56 -169.99 -5.02 14.61 16 19 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 22 C -0.20 -5.11 8.39 -38.68 -0.32 -5.43 16 23 C -0.11 -1.46 2.23 -90.62 -0.20 -1.66 16 24 C -0.15 -1.68 8.84 37.16 0.33 -1.35 16 25 C -0.14 -1.69 8.85 37.16 0.33 -1.36 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.59 6.45 -51.93 -0.33 0.26 16 29 H 0.06 0.78 6.14 -51.93 -0.32 0.46 16 30 H 0.09 1.59 5.46 -51.93 -0.28 1.31 16 31 H 0.09 0.92 6.34 -51.93 -0.33 0.59 16 32 H 0.09 0.90 6.58 -51.93 -0.34 0.55 16 33 H 0.40 5.28 8.82 -40.82 -0.36 4.92 16 34 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 36 H 0.12 3.31 6.32 -52.49 -0.33 2.97 16 37 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 38 H 0.11 2.79 6.47 -52.49 -0.34 2.45 16 39 H 0.11 1.82 5.45 -51.93 -0.28 1.53 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.60 6.39 -51.93 -0.33 0.27 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.71 6.31 -51.93 -0.33 0.38 16 45 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -29.84 347.51 -8.80 -38.64 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -6.93 Total: 11.40 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -2.68 Total: -26.57 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.55 Total: -32.88 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.05 Total: -10.43 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.84 -8.80 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456737575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.656 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds