Wall clock time and date at job start Tue Mar 31 2020 05:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47227 * 2 1 4 4 H 1.09000 * 109.47130 * 305.77666 * 3 2 1 5 5 C 1.52995 * 109.47104 * 65.77351 * 3 2 1 6 6 C 1.50708 * 109.46678 * 58.37844 * 5 3 2 7 7 O 1.21284 * 120.00221 * 5.61204 * 6 5 3 8 8 N 1.34781 * 119.99600 * 185.61003 * 6 5 3 9 9 C 1.39936 * 119.99948 * 174.95120 * 8 6 5 10 10 C 1.39291 * 119.94876 * 145.99777 * 9 8 6 11 11 C 1.38483 * 120.42802 * 179.97438 * 10 9 8 12 12 C 1.37685 * 120.32510 * 0.02562 * 11 10 9 13 13 C 1.40748 * 119.88307 * 359.97438 * 12 11 10 14 14 C 1.41400 * 120.21052 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00340 * 146.27485 * 14 13 12 16 16 C 1.39939 * 120.00181 * 326.28049 * 14 13 12 17 17 N 1.30832 * 119.99757 * 357.07275 * 16 14 13 18 18 Si 1.86797 * 120.00114 * 177.07750 * 16 14 13 19 19 H 1.48502 * 109.46962 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47119 * 119.99719 * 18 16 14 21 21 H 1.48501 * 109.47281 * 239.99761 * 18 16 14 22 22 C 1.38247 * 119.94529 * 325.72737 * 9 8 6 23 23 C 1.53002 * 109.47199 * 185.77803 * 3 2 1 24 24 C 1.52999 * 109.47199 * 179.97438 * 23 3 2 25 25 C 1.53002 * 109.47204 * 59.99885 * 23 3 2 26 26 H 1.08993 * 109.47529 * 63.97921 * 1 2 3 27 27 H 1.09001 * 109.47281 * 183.98563 * 1 2 3 28 28 H 1.09005 * 109.46492 * 303.97407 * 1 2 3 29 29 H 1.09004 * 109.46823 * 239.99937 * 2 1 3 30 30 H 1.08998 * 109.47276 * 120.00514 * 2 1 3 31 31 H 1.09001 * 109.47195 * 178.37476 * 5 3 2 32 32 H 1.08996 * 109.47551 * 298.38117 * 5 3 2 33 33 H 0.97005 * 120.00192 * 354.94866 * 8 6 5 34 34 H 1.07998 * 119.78309 * 0.02562 * 10 9 8 35 35 H 1.08004 * 119.84101 * 180.02562 * 11 10 9 36 36 H 1.07994 * 120.06273 * 179.97438 * 12 11 10 37 37 H 0.96995 * 119.99627 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.15949 * 359.97438 * 22 9 8 39 39 H 1.09000 * 109.46968 * 299.99962 * 23 3 2 40 40 H 1.09000 * 109.47130 * 299.99863 * 24 23 3 41 41 H 1.09002 * 109.47052 * 59.99585 * 24 23 3 42 42 H 1.09000 * 109.47022 * 180.02562 * 24 23 3 43 43 H 1.09000 * 109.47344 * 180.02562 * 25 23 3 44 44 H 1.09003 * 109.46961 * 300.00532 * 25 23 3 45 45 H 1.09000 * 109.47095 * 60.00155 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5947 1.9853 -0.8337 5 6 1.6520 2.1206 1.3154 6 6 2.2347 1.3471 2.4702 7 8 2.9782 0.4123 2.2603 8 7 1.9294 1.6944 3.7362 9 6 2.3840 0.9137 4.8049 10 6 2.7224 1.5183 6.0132 11 6 3.1728 0.7552 7.0774 12 6 3.2917 -0.6108 6.9522 13 6 2.9535 -1.2357 5.7372 14 6 3.0734 -2.6380 5.6008 15 1 2.3759 -3.1819 4.9813 16 6 4.0959 -3.3210 6.2688 17 7 4.9752 -2.6560 6.9732 18 14 4.2055 -5.1823 6.1544 19 1 3.1010 -5.6917 5.3025 20 1 5.5091 -5.5655 5.5554 21 1 4.0938 -5.7692 7.5140 22 6 2.4913 -0.4571 4.6614 23 6 3.5631 1.4449 -0.1452 24 6 4.0731 2.8874 -0.1459 25 6 3.9511 0.7668 -1.4607 26 1 -0.3634 0.4508 -0.9234 27 1 -0.3634 -1.0252 0.0714 28 1 -0.3632 0.5743 0.8523 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0402 3.1391 1.3275 32 1 0.5660 2.1446 1.4054 33 1 1.3946 2.4856 3.9066 34 1 2.6320 2.5891 6.1211 35 1 3.4322 1.2338 8.0102 36 1 3.6438 -1.2018 7.7847 37 1 5.6842 -3.1295 7.4359 38 1 2.2246 -0.9273 3.7264 39 1 4.0084 0.9021 0.6885 40 1 3.6278 3.4299 -0.9799 41 1 3.7966 3.3709 0.7911 42 1 5.1581 2.8891 -0.2498 43 1 5.0362 0.7681 -1.5640 44 1 3.5877 -0.2609 -1.4607 45 1 3.5058 1.3096 -2.2945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456737575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:26 Heat of formation + Delta-G solvation = -56.434073 kcal Electronic energy + Delta-G solvation = -23541.492443 eV Core-core repulsion = 20329.033890 eV Total energy + Delta-G solvation = -3212.458553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.53039 -39.45610 -37.86038 -36.02230 -34.75923 -33.71300 -31.72654 -31.36775 -29.46170 -27.91125 -27.24580 -25.90163 -23.34949 -22.75579 -22.22792 -21.30660 -20.43169 -19.38881 -17.72790 -17.43283 -16.85880 -16.69499 -16.44111 -15.79016 -15.54042 -15.17456 -14.99599 -14.78615 -14.49747 -14.13987 -13.93888 -13.68300 -13.57232 -13.05417 -13.00316 -12.93829 -12.84551 -12.77049 -12.53577 -12.47603 -12.25165 -12.21199 -12.05163 -11.71737 -11.63467 -11.38911 -11.11240 -11.10198 -11.03620 -10.69913 -10.15705 -9.30143 -8.66512 -8.51844 -6.40299 0.90554 1.00369 1.34415 1.45367 1.50008 1.91931 2.21293 2.37964 2.78771 3.71172 3.76014 3.85639 3.96986 4.19537 4.31805 4.46903 4.50552 4.57991 4.61697 4.64531 4.66554 4.68326 4.83643 4.90161 4.98786 5.06287 5.07406 5.11337 5.12246 5.15906 5.16296 5.20393 5.27136 5.35230 5.38500 5.47272 5.55738 5.61927 5.77088 5.85712 5.88445 6.07879 6.14834 6.39402 6.71237 6.75807 6.96455 7.02503 7.49783 8.41939 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.004624 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.800056 B = 6054.070848 C = 6856.184012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C -0.055 4.055 4 H 0.102 0.898 5 C -0.131 4.131 6 C 0.496 3.504 7 O -0.547 6.547 8 N -0.665 5.665 9 C 0.155 3.845 10 C -0.242 4.242 11 C -0.098 4.098 12 C -0.186 4.186 13 C 0.085 3.915 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.030 3.970 17 N -0.842 5.842 18 Si 0.984 3.016 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.258 1.258 22 C -0.222 4.222 23 C -0.114 4.114 24 C -0.142 4.142 25 C -0.141 4.141 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.419 0.581 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.284 0.716 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 11.358 -12.366 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.074 4.074 4 H 0.120 0.880 5 C -0.170 4.170 6 C 0.286 3.714 7 O -0.424 6.424 8 N -0.312 5.312 9 C 0.062 3.938 10 C -0.263 4.263 11 C -0.117 4.117 12 C -0.206 4.206 13 C 0.082 3.918 14 C -0.534 4.534 15 H 0.081 0.919 16 C -0.182 4.182 17 N -0.470 5.470 18 Si 0.805 3.195 19 H -0.187 1.187 20 H -0.193 1.193 21 H -0.182 1.182 22 C -0.244 4.244 23 C -0.132 4.132 24 C -0.200 4.200 25 C -0.198 4.198 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.257 0.743 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.133 10.687 -12.439 17.509 hybrid contribution 0.280 -0.890 0.434 1.029 sum -5.852 9.797 -12.005 16.564 Atomic orbital electron populations 1.21802 0.95148 1.01254 1.02325 1.21847 0.96240 0.97459 1.02036 1.20941 0.94963 0.95502 0.95964 0.87984 1.21945 1.03292 1.00625 0.91121 1.21705 0.80511 0.84775 0.84418 1.90668 1.36426 1.30845 1.84458 1.43552 1.53764 1.29213 1.04627 1.17532 0.98352 0.89718 0.88202 1.20552 1.12852 0.99182 0.93746 1.20873 0.98886 0.93593 0.98333 1.21373 1.07033 0.94493 0.97748 1.17863 0.89286 0.93906 0.90709 1.19718 1.13398 0.93074 1.27212 0.91850 1.26682 0.93697 1.05491 0.92312 1.69850 1.12393 1.39259 1.25507 0.85130 0.78940 0.76073 0.79322 1.18662 1.19346 1.18246 1.20984 1.13047 0.92510 0.97847 1.21408 0.95979 0.97156 0.98693 1.21852 1.00516 0.95583 1.02002 1.21821 1.00631 1.00272 0.97121 0.90827 0.94008 0.92729 0.91958 0.93447 0.86055 0.86467 0.74295 0.85024 0.86051 0.87881 0.90539 0.89490 0.92166 0.90775 0.92965 0.93721 0.93592 0.93597 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.77 71.98 0.70 -2.47 16 2 C -0.14 -3.64 4.95 30.59 0.15 -3.49 16 3 C -0.06 -1.19 1.71 -10.79 -0.02 -1.21 16 4 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 5 C -0.13 -2.67 4.92 29.85 0.15 -2.53 16 6 C 0.50 16.32 6.90 87.66 0.61 16.92 16 7 O -0.55 -23.72 9.15 -3.04 -0.03 -23.75 16 8 N -0.67 -21.88 5.34 -303.64 -1.62 -23.50 16 9 C 0.16 6.89 6.26 38.10 0.24 7.13 16 10 C -0.24 -10.14 9.97 22.58 0.23 -9.91 16 11 C -0.10 -4.53 10.02 22.20 0.22 -4.31 16 12 C -0.19 -10.21 8.64 22.75 0.20 -10.01 16 13 C 0.08 4.94 5.52 -21.31 -0.12 4.82 16 14 C -0.50 -29.69 9.05 23.46 0.21 -29.48 16 15 H 0.06 3.70 7.85 -2.91 -0.02 3.68 16 16 C 0.03 1.64 5.35 85.25 0.46 2.09 16 17 N -0.84 -47.24 10.80 21.83 0.24 -47.00 16 18 Si 0.98 41.81 29.56 68.60 2.03 43.84 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 22 C -0.22 -11.93 8.39 22.85 0.19 -11.73 16 23 C -0.11 -2.88 2.23 -10.79 -0.02 -2.90 16 24 C -0.14 -2.90 8.84 71.98 0.64 -2.26 16 25 C -0.14 -3.19 8.85 71.98 0.64 -2.55 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 1.12 6.45 -2.38 -0.02 1.10 16 29 H 0.06 1.58 6.14 -2.38 -0.01 1.57 16 30 H 0.05 1.71 5.46 -2.39 -0.01 1.70 16 31 H 0.12 1.84 6.34 -2.39 -0.02 1.83 16 32 H 0.12 1.82 6.58 -2.39 -0.02 1.80 16 33 H 0.42 9.72 8.82 -92.70 -0.82 8.90 16 34 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 35 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 36 H 0.10 5.92 6.32 -2.91 -0.02 5.90 16 37 H 0.28 14.41 8.30 -92.71 -0.77 13.64 16 38 H 0.09 4.91 6.47 -2.91 -0.02 4.89 16 39 H 0.06 2.13 5.45 -2.39 -0.01 2.12 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.05 1.04 6.39 -2.39 -0.02 1.03 16 42 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.04 1.12 6.31 -2.39 -0.02 1.11 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -71.35 347.51 5.25 -66.10 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: 0.17 Total: 36.20 kcal Atomic # 6 Polarization: -56.35 SS G_CDS: 4.46 Total: -51.88 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -1.38 Total: -70.51 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.03 Total: -23.75 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -71.35 5.25 -66.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456737575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.665 kcal (2) G-P(sol) polarization free energy of solvation -71.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds