Wall clock time and date at job start Tue Mar 31 2020 05:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46806 * 2 1 4 4 H 1.09000 * 109.47339 * 306.22348 * 3 2 1 5 5 C 1.53004 * 109.47210 * 186.22374 * 3 2 1 6 6 C 1.50704 * 109.47204 * 162.63794 * 5 3 2 7 7 O 1.21284 * 120.00008 * 350.35630 * 6 5 3 8 8 N 1.34773 * 119.99734 * 170.36083 * 6 5 3 9 9 C 1.39935 * 119.99687 * 184.14356 * 8 6 5 10 10 C 1.39297 * 119.94928 * 142.22570 * 9 8 6 11 11 C 1.38482 * 120.42812 * 179.97438 * 10 9 8 12 12 C 1.37685 * 120.32566 * 0.02562 * 11 10 9 13 13 C 1.40733 * 119.88239 * 0.02562 * 12 11 10 14 14 C 1.41416 * 120.21062 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99681 * 145.98213 * 14 13 12 16 16 C 1.39928 * 119.99896 * 325.99029 * 14 13 12 17 17 N 1.30829 * 120.00045 * 356.07771 * 16 14 13 18 18 Si 1.86797 * 120.00007 * 176.07968 * 16 14 13 19 19 H 1.48493 * 109.47271 * 59.99733 * 18 16 14 20 20 H 1.48506 * 109.47199 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46977 * 299.99766 * 18 16 14 22 22 C 1.38246 * 119.94688 * 321.94846 * 9 8 6 23 23 C 1.53000 * 109.47282 * 66.22332 * 3 2 1 24 24 C 1.53000 * 109.47172 * 66.40968 * 23 3 2 25 25 C 1.53004 * 109.47085 * 186.40670 * 23 3 2 26 26 H 1.08996 * 109.46678 * 183.06354 * 1 2 3 27 27 H 1.08996 * 109.47070 * 303.06083 * 1 2 3 28 28 H 1.09000 * 109.46837 * 63.06414 * 1 2 3 29 29 H 1.08999 * 109.47341 * 240.00013 * 2 1 3 30 30 H 1.09001 * 109.46769 * 119.99010 * 2 1 3 31 31 H 1.09001 * 109.46993 * 282.63971 * 5 3 2 32 32 H 1.08998 * 109.46861 * 42.64104 * 5 3 2 33 33 H 0.96999 * 120.00630 * 4.13929 * 8 6 5 34 34 H 1.08000 * 119.78002 * 359.97438 * 10 9 8 35 35 H 1.08003 * 119.83894 * 180.02562 * 11 10 9 36 36 H 1.08002 * 120.05934 * 179.97438 * 12 11 10 37 37 H 0.97001 * 120.00203 * 180.02562 * 17 16 14 38 38 H 1.07993 * 120.16075 * 359.97438 * 22 9 8 39 39 H 1.08999 * 109.47652 * 306.40233 * 23 3 2 40 40 H 1.09005 * 109.47279 * 186.53763 * 24 23 3 41 41 H 1.08997 * 109.46721 * 306.53208 * 24 23 3 42 42 H 1.08999 * 109.47386 * 66.53169 * 24 23 3 43 43 H 1.08994 * 109.47198 * 54.18988 * 25 23 3 44 44 H 1.09007 * 109.47133 * 174.19328 * 25 23 3 45 45 H 1.09007 * 109.47265 * 294.19061 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5885 1.9875 -0.8290 5 6 3.5620 1.4454 -0.1564 6 6 4.0208 2.8170 -0.5802 7 8 3.2071 3.6535 -0.9103 8 7 5.3354 3.1138 -0.5925 9 6 5.7566 4.4118 -0.9021 10 6 6.8403 4.9705 -0.2283 11 6 7.2659 6.2540 -0.5271 12 6 6.6215 6.9927 -1.4940 13 6 5.5245 6.4418 -2.1822 14 6 4.8572 7.1945 -3.1762 15 1 4.4404 6.6985 -4.0401 16 6 4.7372 8.5820 -3.0402 17 7 5.1740 9.1735 -1.9581 18 14 3.9533 9.5897 -4.4038 19 1 2.5586 9.1286 -4.6209 20 1 3.9467 11.0238 -4.0183 21 1 4.7321 9.4180 -5.6565 22 6 5.1003 5.1356 -1.8801 23 6 1.6616 2.1172 1.3200 24 6 2.4216 1.4517 2.4692 25 6 2.0287 3.6013 1.2579 26 1 -0.3632 -1.0262 0.0549 27 1 -0.3633 0.5606 0.8612 28 1 -0.3633 0.4655 -0.9162 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 4.0255 1.1852 0.7952 32 1 3.8509 0.7158 -0.9129 33 1 5.9895 2.4278 -0.3867 34 1 7.3518 4.3989 0.5320 35 1 8.1074 6.6777 0.0009 36 1 6.9568 7.9934 -1.7232 37 1 5.0905 10.1353 -1.8637 38 1 4.2631 4.7015 -2.4064 39 1 0.5892 2.0150 1.4862 40 1 2.0673 1.8519 3.4191 41 1 2.2510 0.3754 2.4422 42 1 3.4876 1.6533 2.3648 43 1 1.5691 4.0527 0.3787 44 1 1.6667 4.1030 2.1553 45 1 3.1120 3.7053 1.1953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456737577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:29 Heat of formation + Delta-G solvation = -37.982289 kcal Electronic energy + Delta-G solvation = -23420.207092 eV Core-core repulsion = 20208.548669 eV Total energy + Delta-G solvation = -3211.658423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.14927 -37.99279 -36.67348 -34.32138 -32.94731 -32.37568 -30.34768 -29.75620 -27.89741 -26.99995 -25.25033 -24.79035 -22.26335 -21.50849 -20.76826 -19.55819 -18.54935 -17.59408 -16.60381 -16.21859 -15.52260 -15.02527 -14.85284 -14.55456 -14.33696 -13.98929 -13.56469 -13.08967 -13.02556 -12.88485 -12.74167 -12.24227 -12.16340 -12.05759 -11.78528 -11.57983 -11.33479 -11.17027 -11.13613 -11.06443 -10.95768 -10.58750 -10.44371 -10.34551 -10.24801 -10.11291 -9.98707 -9.67879 -9.29346 -9.03052 -8.72841 -7.33344 -6.85732 -6.56870 -4.31325 2.70225 2.90466 3.13559 3.16975 3.23494 3.39664 3.74353 4.04639 4.71158 4.73956 4.79757 4.81804 5.13066 5.25611 5.27110 5.37619 5.47568 5.52556 5.67214 5.70182 5.73798 5.76131 5.87007 5.91995 6.01150 6.07647 6.16971 6.24765 6.26344 6.37642 6.40020 6.45326 6.60820 6.77507 6.94633 7.06133 7.10832 7.13372 7.33492 7.62170 7.78023 8.00414 8.15080 8.23361 8.33176 8.70931 8.83835 9.01325 9.03173 10.37575 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.004106 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.400785 B = 6817.901595 C = 7576.420967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.073 4.073 4 H 0.088 0.912 5 C -0.141 4.141 6 C 0.501 3.499 7 O -0.507 6.507 8 N -0.674 5.674 9 C 0.144 3.856 10 C -0.251 4.251 11 C -0.099 4.099 12 C -0.160 4.160 13 C 0.117 3.883 14 C -0.463 4.463 15 H 0.074 0.926 16 C 0.073 3.927 17 N -0.811 5.811 18 Si 0.912 3.088 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.197 4.197 23 C -0.090 4.090 24 C -0.152 4.152 25 C -0.143 4.143 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.396 0.604 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.278 0.722 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.035 0.965 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.745 -14.978 5.532 16.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.092 4.092 4 H 0.106 0.894 5 C -0.181 4.181 6 C 0.288 3.712 7 O -0.381 6.381 8 N -0.319 5.319 9 C 0.053 3.947 10 C -0.273 4.273 11 C -0.118 4.118 12 C -0.179 4.179 13 C 0.115 3.885 14 C -0.494 4.494 15 H 0.092 0.908 16 C -0.142 4.142 17 N -0.438 5.438 18 Si 0.737 3.263 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.219 4.219 23 C -0.108 4.108 24 C -0.209 4.209 25 C -0.200 4.200 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.229 0.771 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.138 0.862 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.055 0.945 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.362 -14.156 5.416 15.772 hybrid contribution 0.055 0.214 -0.260 0.341 sum -4.308 -13.942 5.156 15.476 Atomic orbital electron populations 1.21814 0.95908 1.01154 1.02178 1.21642 0.96045 0.96390 1.01748 1.21077 0.93214 0.95729 0.99177 0.89417 1.21882 0.98036 0.95062 1.03165 1.20570 0.82291 0.89982 0.78392 1.90767 1.52362 1.49422 1.45599 1.43510 1.07209 1.11281 1.69868 1.17450 0.96794 0.83885 0.96585 1.20130 1.03521 0.97561 1.06051 1.20504 0.99083 0.93766 0.98437 1.21414 0.96540 1.00418 0.99560 1.17528 0.89480 0.90259 0.91270 1.19456 1.32174 0.91516 1.06265 0.90771 1.25821 0.94233 0.98259 0.95892 1.69768 1.37588 1.11404 1.25037 0.86310 0.80336 0.78270 0.81375 1.19119 1.20446 1.19048 1.21128 1.02666 0.97627 1.00461 1.21152 0.99770 0.95985 0.93902 1.22004 1.00539 1.00207 0.98190 1.22110 1.02326 0.94327 1.01215 0.93135 0.92399 0.92675 0.92136 0.91836 0.88976 0.89302 0.77065 0.89364 0.89070 0.86230 0.91148 0.87337 0.91251 0.93047 0.92650 0.92595 0.90887 0.94545 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.76 37.16 0.36 -1.00 16 2 C -0.12 -1.12 5.27 -26.73 -0.14 -1.26 16 3 C -0.07 -0.87 1.64 -90.62 -0.15 -1.02 16 4 H 0.09 1.27 7.30 -51.93 -0.38 0.89 16 5 C -0.14 -1.68 5.03 -27.88 -0.14 -1.82 16 6 C 0.50 8.55 5.67 -10.98 -0.06 8.49 16 7 O -0.51 -10.78 9.81 5.55 0.05 -10.72 16 8 N -0.67 -11.76 5.33 -9.91 -0.05 -11.81 16 9 C 0.14 3.25 6.24 -83.76 -0.52 2.72 16 10 C -0.25 -5.53 9.97 -39.10 -0.39 -5.92 16 11 C -0.10 -2.32 10.01 -39.69 -0.40 -2.72 16 12 C -0.16 -4.23 8.63 -38.84 -0.34 -4.56 16 13 C 0.12 3.25 5.51 -106.85 -0.59 2.66 16 14 C -0.46 -12.90 9.05 -37.74 -0.34 -13.25 16 15 H 0.07 2.00 7.85 -52.49 -0.41 1.59 16 16 C 0.07 1.93 5.34 -17.35 -0.09 1.83 16 17 N -0.81 -21.93 10.87 55.55 0.60 -21.32 16 18 Si 0.91 19.73 29.56 -169.99 -5.03 14.71 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 22 C -0.20 -5.11 8.41 -38.68 -0.33 -5.43 16 23 C -0.09 -1.10 2.59 -90.62 -0.23 -1.33 16 24 C -0.15 -1.58 8.41 37.16 0.31 -1.27 16 25 C -0.14 -2.28 7.48 37.16 0.28 -2.00 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.52 6.35 -51.93 -0.33 0.19 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.53 8.02 -51.93 -0.42 0.11 16 30 H 0.06 0.53 6.24 -51.93 -0.32 0.20 16 31 H 0.09 0.94 5.59 -51.93 -0.29 0.65 16 32 H 0.09 0.89 7.94 -51.93 -0.41 0.48 16 33 H 0.40 5.33 8.83 -40.82 -0.36 4.97 16 34 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 36 H 0.12 3.27 6.38 -52.49 -0.33 2.94 16 37 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 38 H 0.11 2.89 6.46 -52.49 -0.34 2.55 16 39 H 0.07 0.80 6.28 -51.93 -0.33 0.47 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.48 6.23 -51.93 -0.32 0.16 16 42 H 0.06 0.60 6.36 -51.93 -0.33 0.27 16 43 H 0.07 1.34 6.89 -51.93 -0.36 0.99 16 44 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 1.02 5.54 -51.93 -0.29 0.73 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -30.26 345.14 -8.88 -39.14 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.89 Total: 10.69 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -2.77 Total: -25.88 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.55 Total: -33.14 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.05 Total: -10.72 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.26 -8.88 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456737577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.156 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds