Wall clock time and date at job start Tue Mar 31 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46806 * 2 1 4 4 H 1.09000 * 109.47339 * 306.22348 * 3 2 1 5 5 C 1.53004 * 109.47210 * 186.22374 * 3 2 1 6 6 C 1.50704 * 109.47204 * 162.63794 * 5 3 2 7 7 O 1.21284 * 120.00008 * 350.35630 * 6 5 3 8 8 N 1.34773 * 119.99734 * 170.36083 * 6 5 3 9 9 C 1.39935 * 119.99687 * 184.14356 * 8 6 5 10 10 C 1.39297 * 119.94928 * 142.22570 * 9 8 6 11 11 C 1.38482 * 120.42812 * 179.97438 * 10 9 8 12 12 C 1.37685 * 120.32566 * 0.02562 * 11 10 9 13 13 C 1.40733 * 119.88239 * 0.02562 * 12 11 10 14 14 C 1.41416 * 120.21062 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99681 * 145.98213 * 14 13 12 16 16 C 1.39928 * 119.99896 * 325.99029 * 14 13 12 17 17 N 1.30829 * 120.00045 * 356.07771 * 16 14 13 18 18 Si 1.86797 * 120.00007 * 176.07968 * 16 14 13 19 19 H 1.48493 * 109.47271 * 59.99733 * 18 16 14 20 20 H 1.48506 * 109.47199 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46977 * 299.99766 * 18 16 14 22 22 C 1.38246 * 119.94688 * 321.94846 * 9 8 6 23 23 C 1.53000 * 109.47282 * 66.22332 * 3 2 1 24 24 C 1.53000 * 109.47172 * 66.40968 * 23 3 2 25 25 C 1.53004 * 109.47085 * 186.40670 * 23 3 2 26 26 H 1.08996 * 109.46678 * 183.06354 * 1 2 3 27 27 H 1.08996 * 109.47070 * 303.06083 * 1 2 3 28 28 H 1.09000 * 109.46837 * 63.06414 * 1 2 3 29 29 H 1.08999 * 109.47341 * 240.00013 * 2 1 3 30 30 H 1.09001 * 109.46769 * 119.99010 * 2 1 3 31 31 H 1.09001 * 109.46993 * 282.63971 * 5 3 2 32 32 H 1.08998 * 109.46861 * 42.64104 * 5 3 2 33 33 H 0.96999 * 120.00630 * 4.13929 * 8 6 5 34 34 H 1.08000 * 119.78002 * 359.97438 * 10 9 8 35 35 H 1.08003 * 119.83894 * 180.02562 * 11 10 9 36 36 H 1.08002 * 120.05934 * 179.97438 * 12 11 10 37 37 H 0.97001 * 120.00203 * 180.02562 * 17 16 14 38 38 H 1.07993 * 120.16075 * 359.97438 * 22 9 8 39 39 H 1.08999 * 109.47652 * 306.40233 * 23 3 2 40 40 H 1.09005 * 109.47279 * 186.53763 * 24 23 3 41 41 H 1.08997 * 109.46721 * 306.53208 * 24 23 3 42 42 H 1.08999 * 109.47386 * 66.53169 * 24 23 3 43 43 H 1.08994 * 109.47198 * 54.18988 * 25 23 3 44 44 H 1.09007 * 109.47133 * 174.19328 * 25 23 3 45 45 H 1.09007 * 109.47265 * 294.19061 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5885 1.9875 -0.8290 5 6 3.5620 1.4454 -0.1564 6 6 4.0208 2.8170 -0.5802 7 8 3.2071 3.6535 -0.9103 8 7 5.3354 3.1138 -0.5925 9 6 5.7566 4.4118 -0.9021 10 6 6.8403 4.9705 -0.2283 11 6 7.2659 6.2540 -0.5271 12 6 6.6215 6.9927 -1.4940 13 6 5.5245 6.4418 -2.1822 14 6 4.8572 7.1945 -3.1762 15 1 4.4404 6.6985 -4.0401 16 6 4.7372 8.5820 -3.0402 17 7 5.1740 9.1735 -1.9581 18 14 3.9533 9.5897 -4.4038 19 1 2.5586 9.1286 -4.6209 20 1 3.9467 11.0238 -4.0183 21 1 4.7321 9.4180 -5.6565 22 6 5.1003 5.1356 -1.8801 23 6 1.6616 2.1172 1.3200 24 6 2.4216 1.4517 2.4692 25 6 2.0287 3.6013 1.2579 26 1 -0.3632 -1.0262 0.0549 27 1 -0.3633 0.5606 0.8612 28 1 -0.3633 0.4655 -0.9162 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 4.0255 1.1852 0.7952 32 1 3.8509 0.7158 -0.9129 33 1 5.9895 2.4278 -0.3867 34 1 7.3518 4.3989 0.5320 35 1 8.1074 6.6777 0.0009 36 1 6.9568 7.9934 -1.7232 37 1 5.0905 10.1353 -1.8637 38 1 4.2631 4.7015 -2.4064 39 1 0.5892 2.0150 1.4862 40 1 2.0673 1.8519 3.4191 41 1 2.2510 0.3754 2.4422 42 1 3.4876 1.6533 2.3648 43 1 1.5691 4.0527 0.3787 44 1 1.6667 4.1030 2.1553 45 1 3.1120 3.7053 1.1953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456737577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:28 Heat of formation + Delta-G solvation = -54.749533 kcal Electronic energy + Delta-G solvation = -23420.934175 eV Core-core repulsion = 20208.548669 eV Total energy + Delta-G solvation = -3212.385505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.52669 -39.49030 -38.12118 -36.07129 -34.76744 -33.26006 -31.73123 -31.53117 -29.51269 -28.02913 -27.23641 -25.87527 -23.23274 -23.09940 -22.63806 -21.12566 -19.67287 -19.29920 -18.00698 -17.43391 -17.26778 -16.75461 -16.43841 -15.77817 -15.64282 -15.37991 -14.75357 -14.69732 -14.39562 -14.14410 -13.96497 -13.75795 -13.61029 -13.35738 -13.04945 -12.89741 -12.87275 -12.60539 -12.47456 -12.26103 -12.21781 -12.12951 -11.95404 -11.86998 -11.56554 -11.31909 -11.17507 -11.13033 -10.99291 -10.77129 -10.37340 -9.30744 -8.69758 -8.53604 -6.40509 0.91438 1.01104 1.34141 1.46345 1.48018 1.89428 2.21058 2.37106 2.78150 3.70018 3.75440 3.85203 3.87261 4.12408 4.34277 4.41752 4.46986 4.55849 4.57442 4.61757 4.63637 4.79429 4.80239 4.86279 4.94987 5.04605 5.06809 5.11447 5.14655 5.16816 5.20684 5.23916 5.30227 5.34910 5.40159 5.40843 5.47548 5.57248 5.71503 5.82170 5.87755 6.06797 6.13680 6.38702 6.70229 6.74584 6.95781 7.01734 7.48417 8.41708 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.004106 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.400785 B = 6817.901595 C = 7576.420967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.072 4.072 4 H 0.052 0.948 5 C -0.129 4.129 6 C 0.494 3.506 7 O -0.554 6.554 8 N -0.665 5.665 9 C 0.154 3.846 10 C -0.239 4.239 11 C -0.098 4.098 12 C -0.186 4.186 13 C 0.086 3.914 14 C -0.507 4.507 15 H 0.064 0.936 16 C 0.031 3.969 17 N -0.842 5.842 18 Si 0.984 3.016 19 H -0.268 1.268 20 H -0.264 1.264 21 H -0.256 1.256 22 C -0.222 4.222 23 C -0.086 4.086 24 C -0.148 4.148 25 C -0.136 4.136 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.420 0.580 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.285 0.715 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.035 0.965 44 H 0.038 0.962 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 -17.724 7.127 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.091 4.091 4 H 0.070 0.930 5 C -0.169 4.169 6 C 0.284 3.716 7 O -0.432 6.432 8 N -0.312 5.312 9 C 0.060 3.940 10 C -0.260 4.260 11 C -0.117 4.117 12 C -0.206 4.206 13 C 0.083 3.917 14 C -0.538 4.538 15 H 0.082 0.918 16 C -0.181 4.181 17 N -0.470 5.470 18 Si 0.805 3.195 19 H -0.193 1.193 20 H -0.188 1.188 21 H -0.180 1.180 22 C -0.243 4.243 23 C -0.104 4.104 24 C -0.205 4.205 25 C -0.193 4.193 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.257 0.743 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.800 -16.956 7.032 18.745 hybrid contribution -0.100 0.967 -0.659 1.174 sum -3.900 -15.989 6.373 17.649 Atomic orbital electron populations 1.21831 0.95903 1.02061 1.01456 1.21601 0.96019 0.94119 1.03263 1.21044 0.93159 0.97337 0.97603 0.92960 1.21954 0.97942 0.91664 1.05314 1.21637 0.81480 0.91580 0.76895 1.90781 1.53545 1.51425 1.47414 1.43467 1.08267 1.09937 1.69515 1.17526 0.95976 0.85709 0.94759 1.20570 1.02637 0.97088 1.05729 1.20872 0.99337 0.94217 0.97281 1.21352 0.97381 1.00337 1.01503 1.17856 0.90341 0.91344 0.92151 1.19690 1.34206 0.93033 1.06902 0.91786 1.26676 0.94379 0.98725 0.98327 1.69837 1.38519 1.11993 1.26616 0.85233 0.78988 0.76996 0.78287 1.19279 1.18775 1.18045 1.21075 1.03117 0.97913 1.02239 1.21131 1.00661 0.93273 0.95314 1.21973 0.99950 1.01554 0.97015 1.22004 1.00363 0.97459 0.99509 0.91407 0.92596 0.94011 0.91159 0.89655 0.85999 0.86374 0.74258 0.84992 0.85990 0.87991 0.90502 0.89491 0.90551 0.92794 0.90013 0.92674 0.94588 0.94267 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.76 71.98 0.70 -1.71 16 2 C -0.11 -1.70 5.27 30.60 0.16 -1.54 16 3 C -0.07 -1.61 1.64 -10.79 -0.02 -1.62 16 4 H 0.05 1.55 7.30 -2.39 -0.02 1.53 16 5 C -0.13 -2.72 5.03 29.85 0.15 -2.57 16 6 C 0.49 16.63 5.67 87.66 0.50 17.13 16 7 O -0.55 -24.72 9.81 -3.04 -0.03 -24.75 16 8 N -0.66 -22.16 5.33 -303.65 -1.62 -23.78 16 9 C 0.15 6.86 6.24 38.10 0.24 7.10 16 10 C -0.24 -10.04 9.97 22.58 0.23 -9.82 16 11 C -0.10 -4.55 10.01 22.20 0.22 -4.33 16 12 C -0.19 -10.21 8.63 22.75 0.20 -10.01 16 13 C 0.09 5.01 5.51 -21.31 -0.12 4.89 16 14 C -0.51 -30.15 9.05 23.46 0.21 -29.93 16 15 H 0.06 3.74 7.85 -2.91 -0.02 3.72 16 16 C 0.03 1.70 5.34 85.25 0.45 2.15 16 17 N -0.84 -47.43 10.87 21.82 0.24 -47.19 16 18 Si 0.98 41.92 29.56 68.60 2.03 43.95 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 C -0.22 -12.04 8.41 22.85 0.19 -11.85 16 23 C -0.09 -1.97 2.59 -10.79 -0.03 -2.00 16 24 C -0.15 -2.55 8.41 71.98 0.61 -1.94 16 25 C -0.14 -4.47 7.48 71.98 0.54 -3.93 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.88 6.35 -2.39 -0.02 0.87 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.96 8.02 -2.39 -0.02 0.94 16 30 H 0.08 0.96 6.24 -2.39 -0.01 0.95 16 31 H 0.12 1.91 5.59 -2.39 -0.01 1.89 16 32 H 0.12 1.88 7.94 -2.39 -0.02 1.86 16 33 H 0.42 9.86 8.83 -92.71 -0.82 9.04 16 34 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.10 5.86 6.38 -2.91 -0.02 5.85 16 37 H 0.28 14.56 8.30 -92.71 -0.77 13.79 16 38 H 0.09 4.99 6.46 -2.91 -0.02 4.97 16 39 H 0.08 1.66 6.28 -2.39 -0.02 1.64 16 40 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.08 1.01 6.23 -2.39 -0.01 0.99 16 42 H 0.05 0.97 6.36 -2.39 -0.02 0.95 16 43 H 0.04 1.42 6.89 -2.39 -0.02 1.40 16 44 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.03 1.26 5.54 -2.38 -0.01 1.25 16 Total: -1.00 -72.48 345.14 5.03 -67.45 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.17 Total: 34.29 kcal Atomic # 6 Polarization: -54.20 SS G_CDS: 4.23 Total: -49.97 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -1.38 Total: -70.97 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.03 Total: -24.75 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -72.48 5.03 -67.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456737577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.705 kcal (2) G-P(sol) polarization free energy of solvation -72.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds