Wall clock time and date at job start Tue Mar 31 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47351 * 2 1 4 4 N 1.46494 * 109.47259 * 179.97438 * 3 2 1 5 5 C 1.37102 * 119.99816 * 93.39527 * 4 3 2 6 6 H 1.08004 * 120.00141 * 214.49059 * 5 4 3 7 7 C 1.38948 * 120.00184 * 34.49899 * 5 4 3 8 8 N 1.31415 * 120.00017 * 21.79072 * 7 5 4 9 9 Si 1.86803 * 120.00231 * 201.79397 * 7 5 4 10 10 H 1.48497 * 109.46962 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47048 * 119.99363 * 9 7 5 12 12 H 1.48495 * 109.46965 * 239.99618 * 9 7 5 13 13 C 1.34775 * 120.00222 * 273.66896 * 4 3 2 14 14 O 1.21288 * 119.99807 * 359.73293 * 13 4 3 15 15 C 1.50697 * 120.00214 * 179.72373 * 13 4 3 16 16 C 1.50705 * 109.47267 * 180.02562 * 15 13 4 17 17 C 1.38255 * 119.99945 * 269.72913 * 16 15 13 18 18 C 1.38213 * 119.99845 * 179.78573 * 17 16 15 19 19 C 1.38254 * 119.99792 * 0.44441 * 18 17 16 20 20 C 1.38208 * 120.00310 * 359.80832 * 19 18 17 21 21 C 1.50701 * 120.00510 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.46913 * 299.98134 * 21 20 19 23 23 C 1.52998 * 109.47115 * 59.97678 * 21 20 19 24 24 C 1.38208 * 119.99691 * 90.00187 * 16 15 13 25 25 H 1.09002 * 109.47130 * 60.00224 * 1 2 3 26 26 H 1.09001 * 109.47189 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47589 * 300.00480 * 1 2 3 28 28 H 1.08997 * 109.47589 * 239.99520 * 2 1 3 29 29 H 1.09002 * 109.47130 * 119.99776 * 2 1 3 30 30 H 1.08997 * 109.47166 * 59.99260 * 3 2 1 31 31 H 1.09002 * 109.46820 * 299.99965 * 3 2 1 32 32 H 0.97000 * 119.99834 * 180.02562 * 8 7 5 33 33 H 1.09006 * 109.47576 * 300.00321 * 15 13 4 34 34 H 1.09003 * 109.46965 * 60.00391 * 15 13 4 35 35 H 1.08002 * 119.99914 * 0.02562 * 17 16 15 36 36 H 1.08006 * 120.00004 * 180.27314 * 18 17 16 37 37 H 1.08007 * 119.99741 * 179.83579 * 19 18 17 38 38 H 1.08992 * 109.47503 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.47210 * 59.99314 * 22 21 20 40 40 H 1.08998 * 109.47377 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.46978 * 299.99666 * 22 21 20 42 42 H 1.08997 * 109.47265 * 60.00153 * 23 21 20 43 43 H 1.09001 * 109.47535 * 180.02562 * 23 21 20 44 44 H 1.09009 * 109.47308 * 300.00560 * 23 21 20 45 45 H 1.08000 * 120.00753 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1909 1.5126 -1.1844 6 1 5.1286 0.9888 -1.2974 7 6 3.6799 2.2578 -2.2399 8 7 2.8105 3.2156 -2.0079 9 14 4.2287 1.8983 -3.9890 10 1 5.2066 0.7808 -3.9811 11 1 3.0503 1.5197 -4.8095 12 1 4.8657 3.1089 -4.5666 13 6 4.1784 1.3680 1.1657 14 8 3.5715 1.3058 2.2140 15 6 5.6853 1.3617 1.1659 16 6 6.1871 1.2716 2.5841 17 6 6.4276 2.4255 3.3069 18 6 6.8836 2.3428 4.6090 19 6 7.1080 1.1065 5.1856 20 6 6.8725 -0.0469 4.4614 21 6 7.1165 -1.3946 5.0902 22 6 8.5868 -1.5083 5.4980 23 6 6.2306 -1.5477 6.3281 24 6 6.4122 0.0357 3.1603 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 2.4535 3.7355 -2.7448 33 1 6.0453 0.5034 0.5984 34 1 6.0526 2.2801 0.7078 35 1 6.2555 3.3913 2.8552 36 1 7.0673 3.2441 5.1751 37 1 7.4668 1.0420 6.2023 38 1 6.8767 -2.1791 4.3726 39 1 8.8265 -0.7237 6.2157 40 1 8.7632 -2.4829 5.9532 41 1 9.2180 -1.3992 4.6161 42 1 5.1832 -1.4666 6.0376 43 1 6.4073 -2.5223 6.7832 44 1 6.4703 -0.7631 7.0458 45 1 6.2282 -0.8656 2.5944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457502139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:59 Heat of formation + Delta-G solvation = -36.871822 kcal Electronic energy + Delta-G solvation = -23135.189483 eV Core-core repulsion = 19923.579213 eV Total energy + Delta-G solvation = -3211.610270 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.49456 -38.32323 -35.55192 -34.86118 -32.86146 -31.83848 -31.18059 -29.70331 -27.28980 -27.12964 -25.59411 -24.25778 -22.84928 -21.85157 -20.73987 -19.42655 -18.82603 -16.85878 -16.20234 -15.90722 -15.44448 -14.75228 -14.66736 -14.29264 -13.98981 -13.83538 -13.48502 -13.43876 -13.43220 -12.79634 -12.58024 -12.36895 -12.28802 -11.80112 -11.77492 -11.62416 -11.46181 -11.32195 -11.07809 -11.04638 -10.96521 -10.90530 -10.63528 -10.42252 -10.33384 -10.30247 -10.23062 -9.71374 -9.10748 -8.54100 -8.33194 -8.05449 -7.50760 -6.38680 -4.06122 1.79498 1.83668 3.08467 3.20297 3.23520 3.93571 4.07756 4.16674 4.77880 4.85508 4.90899 5.03773 5.24751 5.32481 5.35765 5.50779 5.51961 5.60234 5.75351 5.80865 5.81178 5.84044 5.87925 5.96016 5.98459 6.04501 6.18127 6.21188 6.27207 6.33100 6.36560 6.50252 6.53122 6.55593 6.64126 6.71834 6.84925 6.87650 6.95899 7.14497 7.16689 7.35961 7.44883 7.51934 7.93686 8.37580 9.07366 9.54600 9.98109 10.62104 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.004147 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.782201 B = 6751.007686 C = 7366.174311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.114 3.886 4 N -0.440 5.440 5 C -0.340 4.340 6 H 0.090 0.910 7 C 0.043 3.957 8 N -0.857 5.857 9 Si 0.911 3.089 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.472 3.528 14 O -0.599 6.599 15 C -0.088 4.088 16 C -0.039 4.039 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.128 4.128 20 C -0.080 4.080 21 C -0.055 4.055 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.106 4.106 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.269 0.731 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.867 -5.839 8.321 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.010 4.010 4 N -0.159 5.159 5 C -0.467 4.467 6 H 0.108 0.892 7 C -0.163 4.163 8 N -0.494 5.494 9 Si 0.738 3.262 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.261 3.739 14 O -0.484 6.484 15 C -0.127 4.127 16 C -0.039 4.039 17 C -0.129 4.129 18 C -0.138 4.138 19 C -0.146 4.146 20 C -0.080 4.080 21 C -0.074 4.074 22 C -0.199 4.199 23 C -0.200 4.200 24 C -0.124 4.124 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.440 -5.715 8.703 12.242 hybrid contribution 0.130 -0.010 -1.115 1.123 sum 6.570 -5.725 7.588 11.555 Atomic orbital electron populations 1.21653 0.96657 1.00373 1.01363 1.21828 0.94652 0.99583 1.01168 1.21442 0.81512 0.94463 1.03534 1.43486 1.04738 1.62999 1.04639 1.19473 1.07768 1.29991 0.89512 0.89225 1.25318 0.97024 0.93580 1.00333 1.69945 1.30256 1.16704 1.32474 0.86128 0.78786 0.78628 0.82694 1.19156 1.20502 1.20731 1.20207 0.88755 0.81062 0.83877 1.90545 1.70203 1.55983 1.31689 1.20482 0.95175 1.04326 0.92760 1.19590 0.95622 0.92991 0.95717 1.20984 0.99383 0.98113 0.94470 1.20989 1.00339 0.97191 0.95250 1.20762 1.02465 0.92152 0.99250 1.19691 0.99746 0.94515 0.94076 1.20083 0.95578 0.94377 0.97345 1.21843 0.95388 1.01305 1.01343 1.21844 1.00027 1.01147 0.96992 1.20848 0.99845 0.97122 0.94630 0.93011 0.93687 0.93177 0.92433 0.93026 0.93111 0.87526 0.92092 0.89570 0.88668 0.86479 0.86703 0.86953 0.90704 0.92608 0.92765 0.92600 0.92333 0.92787 0.92624 0.86745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.15 0.37 -2.10 16 2 C -0.13 -2.80 6.24 -26.73 -0.17 -2.97 16 3 C 0.11 2.77 4.94 -4.04 -0.02 2.75 16 4 N -0.44 -11.10 2.55 -114.81 -0.29 -11.39 16 5 C -0.34 -8.47 8.70 -14.93 -0.13 -8.60 16 6 H 0.09 2.12 6.98 -52.48 -0.37 1.76 16 7 C 0.04 1.07 4.95 -17.47 -0.09 0.99 16 8 N -0.86 -22.37 11.32 55.50 0.63 -21.74 16 9 Si 0.91 19.08 29.61 -169.99 -5.03 14.05 16 10 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.47 11.57 7.61 -10.99 -0.08 11.49 16 14 O -0.60 -16.09 15.67 5.55 0.09 -16.00 16 15 C -0.09 -1.78 4.49 -29.03 -0.13 -1.91 16 16 C -0.04 -0.73 4.37 -104.62 -0.46 -1.19 16 17 C -0.11 -1.96 9.70 -39.58 -0.38 -2.35 16 18 C -0.12 -1.83 10.05 -39.58 -0.40 -2.22 16 19 C -0.13 -1.85 8.71 -39.59 -0.34 -2.19 16 20 C -0.08 -1.20 4.78 -104.62 -0.50 -1.70 16 21 C -0.06 -0.67 3.09 -91.77 -0.28 -0.95 16 22 C -0.14 -1.42 9.01 37.16 0.33 -1.09 16 23 C -0.14 -1.59 9.01 37.16 0.33 -1.26 16 24 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 1.29 7.53 -51.93 -0.39 0.90 16 31 H 0.11 2.72 5.35 -51.93 -0.28 2.45 16 32 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.09 1.62 7.59 -51.93 -0.39 1.23 16 34 H 0.10 1.90 8.04 -51.93 -0.42 1.48 16 35 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 37 H 0.11 1.34 7.10 -52.48 -0.37 0.97 16 38 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 39 H 0.05 0.54 7.39 -51.93 -0.38 0.15 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.59 7.39 -51.92 -0.38 0.20 16 45 H 0.11 1.88 7.95 -52.49 -0.42 1.46 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -28.98 366.22 -9.01 -37.99 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.60 Total: 7.07 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -2.32 Total: -15.50 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.34 Total: -33.13 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.09 Total: -16.00 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.98 -9.01 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457502139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.116 kcal (2) G-P(sol) polarization free energy of solvation -28.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds