Wall clock time and date at job start Tue Mar 31 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47351 * 2 1 4 4 N 1.46494 * 109.47259 * 179.97438 * 3 2 1 5 5 C 1.37102 * 119.99816 * 93.39527 * 4 3 2 6 6 H 1.08004 * 120.00141 * 214.49059 * 5 4 3 7 7 C 1.38948 * 120.00184 * 34.49899 * 5 4 3 8 8 N 1.31415 * 120.00017 * 21.79072 * 7 5 4 9 9 Si 1.86803 * 120.00231 * 201.79397 * 7 5 4 10 10 H 1.48497 * 109.46962 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47048 * 119.99363 * 9 7 5 12 12 H 1.48495 * 109.46965 * 239.99618 * 9 7 5 13 13 C 1.34775 * 120.00222 * 273.66896 * 4 3 2 14 14 O 1.21288 * 119.99807 * 359.73293 * 13 4 3 15 15 C 1.50697 * 120.00214 * 179.72373 * 13 4 3 16 16 C 1.50705 * 109.47267 * 180.02562 * 15 13 4 17 17 C 1.38255 * 119.99945 * 269.72913 * 16 15 13 18 18 C 1.38213 * 119.99845 * 179.78573 * 17 16 15 19 19 C 1.38254 * 119.99792 * 0.44441 * 18 17 16 20 20 C 1.38208 * 120.00310 * 359.80832 * 19 18 17 21 21 C 1.50701 * 120.00510 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.46913 * 299.98134 * 21 20 19 23 23 C 1.52998 * 109.47115 * 59.97678 * 21 20 19 24 24 C 1.38208 * 119.99691 * 90.00187 * 16 15 13 25 25 H 1.09002 * 109.47130 * 60.00224 * 1 2 3 26 26 H 1.09001 * 109.47189 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47589 * 300.00480 * 1 2 3 28 28 H 1.08997 * 109.47589 * 239.99520 * 2 1 3 29 29 H 1.09002 * 109.47130 * 119.99776 * 2 1 3 30 30 H 1.08997 * 109.47166 * 59.99260 * 3 2 1 31 31 H 1.09002 * 109.46820 * 299.99965 * 3 2 1 32 32 H 0.97000 * 119.99834 * 180.02562 * 8 7 5 33 33 H 1.09006 * 109.47576 * 300.00321 * 15 13 4 34 34 H 1.09003 * 109.46965 * 60.00391 * 15 13 4 35 35 H 1.08002 * 119.99914 * 0.02562 * 17 16 15 36 36 H 1.08006 * 120.00004 * 180.27314 * 18 17 16 37 37 H 1.08007 * 119.99741 * 179.83579 * 19 18 17 38 38 H 1.08992 * 109.47503 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.47210 * 59.99314 * 22 21 20 40 40 H 1.08998 * 109.47377 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.46978 * 299.99666 * 22 21 20 42 42 H 1.08997 * 109.47265 * 60.00153 * 23 21 20 43 43 H 1.09001 * 109.47535 * 180.02562 * 23 21 20 44 44 H 1.09009 * 109.47308 * 300.00560 * 23 21 20 45 45 H 1.08000 * 120.00753 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1909 1.5126 -1.1844 6 1 5.1286 0.9888 -1.2974 7 6 3.6799 2.2578 -2.2399 8 7 2.8105 3.2156 -2.0079 9 14 4.2287 1.8983 -3.9890 10 1 5.2066 0.7808 -3.9811 11 1 3.0503 1.5197 -4.8095 12 1 4.8657 3.1089 -4.5666 13 6 4.1784 1.3680 1.1657 14 8 3.5715 1.3058 2.2140 15 6 5.6853 1.3617 1.1659 16 6 6.1871 1.2716 2.5841 17 6 6.4276 2.4255 3.3069 18 6 6.8836 2.3428 4.6090 19 6 7.1080 1.1065 5.1856 20 6 6.8725 -0.0469 4.4614 21 6 7.1165 -1.3946 5.0902 22 6 8.5868 -1.5083 5.4980 23 6 6.2306 -1.5477 6.3281 24 6 6.4122 0.0357 3.1603 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 2.4535 3.7355 -2.7448 33 1 6.0453 0.5034 0.5984 34 1 6.0526 2.2801 0.7078 35 1 6.2555 3.3913 2.8552 36 1 7.0673 3.2441 5.1751 37 1 7.4668 1.0420 6.2023 38 1 6.8767 -2.1791 4.3726 39 1 8.8265 -0.7237 6.2157 40 1 8.7632 -2.4829 5.9532 41 1 9.2180 -1.3992 4.6161 42 1 5.1832 -1.4666 6.0376 43 1 6.4073 -2.5223 6.7832 44 1 6.4703 -0.7631 7.0458 45 1 6.2282 -0.8656 2.5944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457502139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:58 Heat of formation + Delta-G solvation = -49.460423 kcal Electronic energy + Delta-G solvation = -23135.735365 eV Core-core repulsion = 19923.579213 eV Total energy + Delta-G solvation = -3212.156152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95589 -39.98973 -37.12102 -36.29627 -34.59817 -33.45265 -32.88702 -30.89764 -28.80759 -27.94188 -27.41098 -26.02525 -23.98062 -23.17756 -22.37236 -21.10556 -20.28151 -18.62737 -17.83078 -17.45380 -16.79064 -16.48941 -16.15437 -15.88412 -15.51131 -15.44400 -14.74947 -14.65493 -14.55497 -14.26887 -14.15024 -13.79804 -13.39258 -13.22744 -13.16339 -13.05371 -12.87172 -12.79063 -12.67618 -12.61883 -12.39065 -12.12574 -12.01811 -11.98747 -11.95891 -11.54824 -11.46875 -11.45946 -11.01824 -10.40424 -9.62770 -9.48676 -9.39831 -8.30187 -6.04585 0.51795 0.56480 1.40957 1.48843 1.61023 2.03939 2.31912 2.79304 3.03368 3.22522 3.74048 3.87549 4.04120 4.14194 4.19289 4.26738 4.30610 4.36039 4.42717 4.46186 4.54548 4.58992 4.66818 4.73320 4.80793 4.82422 4.84748 4.95350 4.99425 5.02159 5.06918 5.14181 5.19435 5.22684 5.28622 5.35245 5.36492 5.43441 5.45360 5.56601 5.63190 5.76447 5.82658 6.01070 6.20806 6.43278 7.12690 7.60401 8.04410 8.72071 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.004147 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.782201 B = 6751.007686 C = 7366.174311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 C 0.114 3.886 4 N -0.452 5.452 5 C -0.356 4.356 6 H 0.100 0.900 7 C 0.004 3.996 8 N -0.891 5.891 9 Si 0.982 3.018 10 H -0.257 1.257 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.459 3.541 14 O -0.630 6.630 15 C -0.076 4.076 16 C -0.064 4.064 17 C -0.135 4.135 18 C -0.119 4.119 19 C -0.125 4.125 20 C -0.079 4.079 21 C -0.057 4.057 22 C -0.137 4.137 23 C -0.141 4.141 24 C -0.125 4.125 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.026 0.974 31 H 0.095 0.905 32 H 0.272 0.728 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.037 0.963 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.097 -7.078 8.931 13.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C -0.009 4.009 4 N -0.170 5.170 5 C -0.483 4.483 6 H 0.117 0.883 7 C -0.199 4.199 8 N -0.529 5.529 9 Si 0.805 3.195 10 H -0.180 1.180 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.250 3.750 14 O -0.518 6.518 15 C -0.115 4.115 16 C -0.065 4.065 17 C -0.153 4.153 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.079 4.079 21 C -0.075 4.075 22 C -0.194 4.194 23 C -0.198 4.198 24 C -0.144 4.144 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.677 -6.960 9.309 13.930 hybrid contribution -0.261 0.406 -1.226 1.317 sum 7.416 -6.555 8.083 12.779 Atomic orbital electron populations 1.21607 0.93652 1.02365 1.01682 1.21712 0.97255 0.96901 1.00338 1.21413 0.81630 0.96301 1.01574 1.43774 1.05184 1.62826 1.05185 1.19816 1.08408 1.30486 0.89634 0.88290 1.26172 0.96886 0.92891 1.03967 1.70044 1.31446 1.17580 1.33785 0.85056 0.78459 0.78579 0.77380 1.18026 1.20298 1.20572 1.20928 0.90544 0.80331 0.83245 1.90498 1.71284 1.57353 1.32639 1.20356 0.92072 1.04491 0.94589 1.19583 0.97436 0.94261 0.95178 1.21114 1.00785 0.97557 0.95858 1.21333 0.99070 0.98924 0.94320 1.21156 1.01177 0.91419 1.00490 1.20075 0.98139 0.96483 0.93168 1.20162 0.97371 0.92431 0.97547 1.21810 0.93369 1.02767 1.01433 1.21834 0.98469 1.02796 0.96681 1.20987 1.00884 0.96485 0.95995 0.92482 0.90824 0.93093 0.92492 0.94405 0.95503 0.88757 0.91803 0.88538 0.88971 0.87050 0.83898 0.83725 0.91043 0.91770 0.90863 0.93102 0.94383 0.90613 0.91748 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.91 71.98 0.71 -3.87 16 2 C -0.12 -5.25 6.24 30.59 0.19 -5.05 16 3 C 0.11 5.76 4.94 86.38 0.43 6.19 16 4 N -0.45 -23.55 2.55 -635.55 -1.62 -25.17 16 5 C -0.36 -18.01 8.70 84.04 0.73 -17.28 16 6 H 0.10 4.71 6.98 -2.91 -0.02 4.69 16 7 C 0.00 0.19 4.95 84.93 0.42 0.61 16 8 N -0.89 -47.31 11.32 21.66 0.25 -47.06 16 9 Si 0.98 38.87 29.61 68.60 2.03 40.90 16 10 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 11 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 13 C 0.46 23.45 7.61 87.66 0.67 24.11 16 14 O -0.63 -35.36 15.67 -3.05 -0.05 -35.41 16 15 C -0.08 -3.18 4.49 29.10 0.13 -3.05 16 16 C -0.06 -2.48 4.37 -19.87 -0.09 -2.57 16 17 C -0.13 -4.83 9.70 22.27 0.22 -4.62 16 18 C -0.12 -3.47 10.05 22.27 0.22 -3.24 16 19 C -0.12 -3.32 8.71 22.27 0.19 -3.13 16 20 C -0.08 -2.27 4.78 -19.87 -0.09 -2.36 16 21 C -0.06 -1.25 3.09 -11.54 -0.04 -1.29 16 22 C -0.14 -2.34 9.01 71.98 0.65 -1.69 16 23 C -0.14 -2.81 9.01 71.98 0.65 -2.16 16 24 C -0.13 -4.38 9.33 22.27 0.21 -4.17 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.03 1.43 7.53 -2.39 -0.02 1.41 16 31 H 0.09 4.99 5.35 -2.39 -0.01 4.97 16 32 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 33 H 0.10 3.74 7.59 -2.38 -0.02 3.73 16 34 H 0.09 3.84 8.04 -2.39 -0.02 3.83 16 35 H 0.11 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 37 H 0.15 2.90 7.10 -2.91 -0.02 2.88 16 38 H 0.07 1.62 7.88 -2.39 -0.02 1.60 16 39 H 0.06 0.99 7.39 -2.39 -0.02 0.98 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 43 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.16 7.39 -2.38 -0.02 1.15 16 45 H 0.11 3.82 7.95 -2.91 -0.02 3.80 16 Total: -1.00 -63.91 366.22 6.75 -57.16 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.94 Total: 33.14 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 5.20 Total: -23.56 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -1.37 Total: -72.23 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.05 Total: -35.41 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -63.91 6.75 -57.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457502139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.701 kcal (2) G-P(sol) polarization free energy of solvation -63.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds