Wall clock time and date at job start Tue Mar 31 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99944 * 2 1 4 4 O 1.42902 * 109.47325 * 135.00065 * 3 2 1 5 5 C 1.35899 * 117.00027 * 180.02562 * 4 3 2 6 6 C 1.38744 * 120.05732 * 0.02562 * 5 4 3 7 7 C 1.38126 * 119.94590 * 179.97438 * 6 5 4 8 8 C 1.38297 * 120.05339 * 359.74368 * 7 6 5 9 9 C 1.38247 * 120.10716 * 0.51372 * 8 7 6 10 10 C 1.50700 * 119.96849 * 179.76360 * 9 8 7 11 11 N 1.46900 * 109.47147 * 266.81046 * 10 9 8 12 12 C 1.46897 * 110.99713 * 198.66088 * 11 10 9 13 13 C 1.50702 * 109.46839 * 157.65164 * 12 11 10 14 14 H 1.07998 * 120.00112 * 358.49855 * 13 12 11 15 15 C 1.37880 * 120.00318 * 178.49746 * 13 12 11 16 16 N 1.31505 * 120.00223 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99698 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47427 * 89.99316 * 17 15 13 19 19 H 1.48500 * 109.46899 * 209.99862 * 17 15 13 20 20 H 1.48508 * 109.46984 * 329.99536 * 17 15 13 21 21 C 1.46902 * 110.99659 * 74.71177 * 11 10 9 22 22 C 1.53001 * 109.46788 * 189.44895 * 21 11 10 23 23 C 1.53003 * 109.47247 * 69.44842 * 21 11 10 24 24 C 1.38162 * 120.05803 * 359.48469 * 9 8 7 25 25 H 1.07998 * 120.00018 * 180.02562 * 1 2 3 26 26 H 1.08006 * 120.00422 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.99997 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46918 * 15.00136 * 3 2 1 29 29 H 1.09003 * 109.47460 * 255.00107 * 3 2 1 30 30 H 1.08003 * 120.03117 * 359.95971 * 6 5 4 31 31 H 1.07996 * 119.97499 * 180.02562 * 7 6 5 32 32 H 1.07991 * 119.94270 * 180.27380 * 8 7 6 33 33 H 1.09003 * 109.47171 * 146.80632 * 10 9 8 34 34 H 1.09001 * 109.47218 * 26.81219 * 10 9 8 35 35 H 1.08999 * 109.47655 * 277.65086 * 12 11 10 36 36 H 1.09001 * 109.47306 * 37.65823 * 12 11 10 37 37 H 0.97000 * 120.00120 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.47038 * 309.44689 * 21 11 10 39 39 H 1.09000 * 109.46930 * 291.13631 * 22 21 11 40 40 H 1.09000 * 109.47225 * 51.13616 * 22 21 11 41 41 H 1.08999 * 109.47424 * 171.13873 * 22 21 11 42 42 H 1.08996 * 109.47048 * 187.08611 * 23 21 11 43 43 H 1.08991 * 109.47075 * 307.08910 * 23 21 11 44 44 H 1.09005 * 109.46655 * 67.09086 * 23 21 11 45 45 H 1.08001 * 120.03095 * 180.23263 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9090 2.3454 1.0789 6 6 3.6582 3.4674 0.3022 7 6 4.4544 4.5884 0.4328 8 6 5.4977 4.5950 1.3406 9 6 5.7529 3.4764 2.1119 10 6 6.8939 3.4852 3.0963 11 7 8.0963 2.9340 2.4572 12 6 9.0817 2.5147 3.4628 13 6 10.0119 1.4941 2.8593 14 1 9.8691 1.1697 1.8392 15 6 11.0455 0.9745 3.6096 16 7 11.8569 0.0836 3.0832 17 14 11.2922 1.5352 5.3744 18 1 10.5179 0.6553 6.2862 19 1 12.7343 1.4603 5.7205 20 1 10.8204 2.9358 5.5193 21 6 8.6818 3.8989 1.5168 22 6 9.7815 3.2144 0.7026 23 6 9.2794 5.0723 2.2960 24 6 4.9593 2.3526 1.9850 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3854 2.1161 0.2660 29 1 2.4755 1.4869 -0.9927 30 1 2.8411 3.4641 -0.4041 31 1 4.2593 5.4621 -0.1712 32 1 6.1164 5.4740 1.4444 33 1 6.6314 2.8771 3.9621 34 1 7.0894 4.5084 3.4169 35 1 9.6563 3.3806 3.7916 36 1 8.5654 2.0757 4.3165 37 1 12.5842 -0.2817 3.6109 38 1 7.9069 4.2665 0.8440 39 1 10.6267 2.9873 1.3524 40 1 9.3942 2.2901 0.2738 41 1 10.1071 3.8781 -0.0984 42 1 9.6005 5.8457 1.5983 43 1 8.5273 5.4810 2.9706 44 1 10.1362 4.7258 2.8739 45 1 5.1568 1.4803 2.5904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534342180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:39 Heat of formation + Delta-G solvation = 19.782870 kcal Electronic energy + Delta-G solvation = -22962.639390 eV Core-core repulsion = 19753.485852 eV Total energy + Delta-G solvation = -3209.153538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13481 -38.44316 -36.99462 -34.29570 -32.60782 -32.10660 -30.27987 -29.94864 -27.78592 -26.73497 -26.38100 -24.46877 -22.50188 -21.80713 -21.08845 -20.12310 -18.67578 -17.63534 -16.65796 -16.51606 -15.93210 -15.82770 -15.45732 -14.71591 -14.62707 -14.01641 -13.94122 -13.50091 -13.34009 -13.18672 -12.93674 -12.56963 -12.39570 -12.24831 -11.69056 -11.51960 -11.44367 -11.26939 -11.23194 -11.18570 -10.84350 -10.81106 -10.60416 -10.41851 -10.25270 -9.96177 -9.80625 -9.63575 -9.02492 -8.63282 -8.47236 -8.05289 -7.27045 -5.98396 -3.92076 1.49423 1.61551 1.77687 3.30500 3.30703 3.38280 3.39391 3.90509 4.46264 4.54960 4.73979 4.85838 4.92218 4.98771 5.06086 5.14584 5.27351 5.32046 5.42002 5.50172 5.53025 5.67424 5.70284 5.78434 5.87467 6.00297 6.07539 6.19087 6.21367 6.29892 6.31146 6.44020 6.48339 6.55275 6.55724 6.64981 6.82362 6.89215 6.92905 6.98352 7.16498 7.49910 7.50944 7.70795 7.96976 8.12255 8.73868 9.14441 9.63234 11.14152 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.003763 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.366559 B = 7438.261887 C = 8258.694880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.152 4.152 3 C 0.087 3.913 4 O -0.312 6.312 5 C 0.125 3.875 6 C -0.218 4.218 7 C -0.084 4.084 8 C -0.152 4.152 9 C -0.020 4.020 10 C 0.081 3.919 11 N -0.514 5.514 12 C 0.153 3.847 13 C -0.498 4.498 14 H 0.090 0.910 15 C 0.066 3.934 16 N -0.902 5.902 17 Si 0.868 3.132 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.269 1.269 21 C 0.087 3.913 22 C -0.138 4.138 23 C -0.187 4.187 24 C -0.127 4.127 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.003 0.997 36 H 0.018 0.982 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.049 0.951 43 H 0.045 0.955 44 H 0.068 0.932 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.923 7.906 -5.428 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.170 4.170 3 C 0.012 3.988 4 O -0.226 6.226 5 C 0.080 3.920 6 C -0.237 4.237 7 C -0.103 4.103 8 C -0.170 4.170 9 C -0.020 4.020 10 C -0.047 4.047 11 N -0.237 5.237 12 C 0.027 3.973 13 C -0.536 4.536 14 H 0.108 0.892 15 C -0.135 4.135 16 N -0.541 5.541 17 Si 0.695 3.305 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.194 1.194 21 C -0.022 4.022 22 C -0.195 4.195 23 C -0.245 4.245 24 C -0.146 4.146 25 H 0.125 0.875 26 H 0.116 0.884 27 H 0.139 0.861 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.876 7.180 -5.538 20.941 hybrid contribution 0.346 1.040 1.227 1.645 sum -18.529 8.219 -4.311 20.724 Atomic orbital electron populations 1.23850 0.95411 1.02425 0.99700 1.22729 0.95660 0.98060 1.00511 1.21772 0.88022 0.96515 0.92458 1.86099 1.42063 1.36024 1.58390 1.18956 0.91608 0.85755 0.95649 1.21096 1.03935 0.94683 1.03973 1.20811 0.94682 0.97215 0.97549 1.20965 0.99041 0.98756 0.98287 1.19713 0.94317 0.92168 0.95844 1.21168 0.89909 0.98903 0.94676 1.62224 1.05548 1.37144 1.18789 1.20381 0.90675 0.95704 0.90552 1.21217 1.09800 1.20918 1.01690 0.89199 1.24887 0.96071 0.95013 0.97530 1.69881 1.17742 1.29657 1.36862 0.86984 0.77364 0.79618 0.86509 1.20333 1.21391 1.19354 1.21550 0.96187 0.90272 0.94161 1.22039 0.99699 0.99140 0.98644 1.22499 1.01803 0.99260 1.00961 1.20322 0.94525 0.99489 1.00256 0.87506 0.88363 0.86112 0.91733 0.91116 0.86149 0.86257 0.86312 0.90356 0.94118 0.97916 0.96413 0.92822 0.91712 0.89218 0.92326 0.95260 0.93153 0.93604 0.91347 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 14.31 29.02 0.42 -0.85 16 2 C -0.15 -1.36 9.89 -36.02 -0.36 -1.72 16 3 C 0.09 0.88 5.15 36.01 0.19 1.07 16 4 O -0.31 -4.37 10.12 -19.42 -0.20 -4.57 16 5 C 0.13 1.83 6.69 -39.22 -0.26 1.57 16 6 C -0.22 -2.74 9.04 -39.44 -0.36 -3.10 16 7 C -0.08 -1.04 10.04 -39.60 -0.40 -1.44 16 8 C -0.15 -2.11 8.28 -39.56 -0.33 -2.43 16 9 C -0.02 -0.31 5.06 -104.65 -0.53 -0.84 16 10 C 0.08 1.40 5.02 -4.98 -0.02 1.37 16 11 N -0.51 -10.52 4.38 -229.51 -1.01 -11.52 16 12 C 0.15 3.59 3.60 -4.98 -0.02 3.57 16 13 C -0.50 -13.66 7.31 -34.44 -0.25 -13.91 16 14 H 0.09 2.69 6.16 -52.49 -0.32 2.36 16 15 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 16 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 17 Si 0.87 21.26 27.50 -169.99 -4.67 16.58 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.31 6.50 56.52 0.37 -5.94 16 21 C 0.09 1.62 2.83 -67.71 -0.19 1.43 16 22 C -0.14 -2.80 7.77 37.16 0.29 -2.52 16 23 C -0.19 -3.16 8.42 37.16 0.31 -2.85 16 24 C -0.13 -2.05 9.65 -39.43 -0.38 -2.43 16 25 H 0.11 0.62 8.06 -52.49 -0.42 0.19 16 26 H 0.10 0.59 7.90 -52.48 -0.41 0.18 16 27 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.06 0.56 7.38 -51.93 -0.38 0.18 16 29 H 0.07 0.65 7.66 -51.93 -0.40 0.25 16 30 H 0.12 1.20 6.30 -52.48 -0.33 0.87 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.50 7.88 -52.49 -0.41 1.09 16 33 H 0.08 1.33 7.56 -51.93 -0.39 0.94 16 34 H 0.04 0.65 5.99 -51.93 -0.31 0.34 16 35 H 0.00 0.08 4.42 -51.93 -0.23 -0.15 16 36 H 0.02 0.42 7.06 -51.93 -0.37 0.06 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.06 1.13 6.09 -51.93 -0.32 0.81 16 39 H 0.09 2.09 5.93 -51.93 -0.31 1.79 16 40 H 0.06 1.28 7.39 -51.93 -0.38 0.90 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.72 6.22 -51.93 -0.32 0.39 16 44 H 0.07 1.30 6.32 -51.93 -0.33 0.98 16 45 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -30.39 352.30 -8.71 -39.10 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.93 Total: 2.94 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -1.99 Total: -21.30 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.23 Total: -38.06 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.20 Total: -4.57 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.39 -8.71 -39.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534342180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.886 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds