Wall clock time and date at job start Tue Mar 31 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99944 * 2 1 4 4 O 1.42902 * 109.47325 * 135.00065 * 3 2 1 5 5 C 1.35899 * 117.00027 * 180.02562 * 4 3 2 6 6 C 1.38744 * 120.05732 * 0.02562 * 5 4 3 7 7 C 1.38126 * 119.94590 * 179.97438 * 6 5 4 8 8 C 1.38297 * 120.05339 * 359.74368 * 7 6 5 9 9 C 1.38247 * 120.10716 * 0.51372 * 8 7 6 10 10 C 1.50700 * 119.96849 * 179.76360 * 9 8 7 11 11 N 1.46900 * 109.47147 * 266.81046 * 10 9 8 12 12 C 1.46897 * 110.99713 * 198.66088 * 11 10 9 13 13 C 1.50702 * 109.46839 * 157.65164 * 12 11 10 14 14 H 1.07998 * 120.00112 * 358.49855 * 13 12 11 15 15 C 1.37880 * 120.00318 * 178.49746 * 13 12 11 16 16 N 1.31505 * 120.00223 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99698 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47427 * 89.99316 * 17 15 13 19 19 H 1.48500 * 109.46899 * 209.99862 * 17 15 13 20 20 H 1.48508 * 109.46984 * 329.99536 * 17 15 13 21 21 C 1.46902 * 110.99659 * 74.71177 * 11 10 9 22 22 C 1.53001 * 109.46788 * 189.44895 * 21 11 10 23 23 C 1.53003 * 109.47247 * 69.44842 * 21 11 10 24 24 C 1.38162 * 120.05803 * 359.48469 * 9 8 7 25 25 H 1.07998 * 120.00018 * 180.02562 * 1 2 3 26 26 H 1.08006 * 120.00422 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.99997 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46918 * 15.00136 * 3 2 1 29 29 H 1.09003 * 109.47460 * 255.00107 * 3 2 1 30 30 H 1.08003 * 120.03117 * 359.95971 * 6 5 4 31 31 H 1.07996 * 119.97499 * 180.02562 * 7 6 5 32 32 H 1.07991 * 119.94270 * 180.27380 * 8 7 6 33 33 H 1.09003 * 109.47171 * 146.80632 * 10 9 8 34 34 H 1.09001 * 109.47218 * 26.81219 * 10 9 8 35 35 H 1.08999 * 109.47655 * 277.65086 * 12 11 10 36 36 H 1.09001 * 109.47306 * 37.65823 * 12 11 10 37 37 H 0.97000 * 120.00120 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.47038 * 309.44689 * 21 11 10 39 39 H 1.09000 * 109.46930 * 291.13631 * 22 21 11 40 40 H 1.09000 * 109.47225 * 51.13616 * 22 21 11 41 41 H 1.08999 * 109.47424 * 171.13873 * 22 21 11 42 42 H 1.08996 * 109.47048 * 187.08611 * 23 21 11 43 43 H 1.08991 * 109.47075 * 307.08910 * 23 21 11 44 44 H 1.09005 * 109.46655 * 67.09086 * 23 21 11 45 45 H 1.08001 * 120.03095 * 180.23263 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9090 2.3454 1.0789 6 6 3.6582 3.4674 0.3022 7 6 4.4544 4.5884 0.4328 8 6 5.4977 4.5950 1.3406 9 6 5.7529 3.4764 2.1119 10 6 6.8939 3.4852 3.0963 11 7 8.0963 2.9340 2.4572 12 6 9.0817 2.5147 3.4628 13 6 10.0119 1.4941 2.8593 14 1 9.8691 1.1697 1.8392 15 6 11.0455 0.9745 3.6096 16 7 11.8569 0.0836 3.0832 17 14 11.2922 1.5352 5.3744 18 1 10.5179 0.6553 6.2862 19 1 12.7343 1.4603 5.7205 20 1 10.8204 2.9358 5.5193 21 6 8.6818 3.8989 1.5168 22 6 9.7815 3.2144 0.7026 23 6 9.2794 5.0723 2.2960 24 6 4.9593 2.3526 1.9850 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3854 2.1161 0.2660 29 1 2.4755 1.4869 -0.9927 30 1 2.8411 3.4641 -0.4041 31 1 4.2593 5.4621 -0.1712 32 1 6.1164 5.4740 1.4444 33 1 6.6314 2.8771 3.9621 34 1 7.0894 4.5084 3.4169 35 1 9.6563 3.3806 3.7916 36 1 8.5654 2.0757 4.3165 37 1 12.5842 -0.2817 3.6109 38 1 7.9069 4.2665 0.8440 39 1 10.6267 2.9873 1.3524 40 1 9.3942 2.2901 0.2738 41 1 10.1071 3.8781 -0.0984 42 1 9.6005 5.8457 1.5983 43 1 8.5273 5.4810 2.9706 44 1 10.1362 4.7258 2.8739 45 1 5.1568 1.4803 2.5904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534342180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:38 Heat of formation + Delta-G solvation = 1.784640 kcal Electronic energy + Delta-G solvation = -22963.419852 eV Core-core repulsion = 19753.485852 eV Total energy + Delta-G solvation = -3209.934000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17927 -39.78219 -38.20003 -35.01627 -34.64615 -33.44020 -31.76934 -31.09050 -29.47975 -27.92765 -27.52347 -25.87487 -23.88185 -23.37359 -22.16144 -20.84126 -20.22754 -19.00367 -18.45674 -17.42371 -16.98538 -16.88079 -16.82316 -16.45858 -15.78504 -15.45811 -15.08947 -14.87112 -14.62362 -14.42873 -14.24998 -13.97880 -13.52049 -13.41516 -13.30597 -12.99217 -12.90854 -12.68046 -12.47967 -12.38077 -12.29269 -12.11061 -12.01864 -11.86816 -11.76295 -11.66909 -11.33410 -11.03441 -10.64922 -10.44294 -9.74597 -9.11102 -8.83861 -8.18142 -6.15713 0.41313 0.55580 1.13528 1.36205 1.36626 1.46291 2.39202 2.43221 2.79494 3.13979 3.43574 3.78973 3.93044 4.00562 4.06706 4.11852 4.20695 4.28263 4.32080 4.37100 4.46513 4.48310 4.53374 4.62262 4.70697 4.78492 4.88885 4.89573 4.97027 4.99225 5.06970 5.14033 5.18265 5.21399 5.39336 5.50262 5.54937 5.61011 5.64869 5.65993 5.75212 5.76177 5.91262 6.12050 6.52498 6.53999 6.75273 6.89713 7.43150 8.97841 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.003763 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.366559 B = 7438.261887 C = 8258.694880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.182 4.182 3 C 0.082 3.918 4 O -0.336 6.336 5 C 0.115 3.885 6 C -0.212 4.212 7 C -0.077 4.077 8 C -0.155 4.155 9 C -0.034 4.034 10 C 0.085 3.915 11 N -0.535 5.535 12 C 0.163 3.837 13 C -0.492 4.492 14 H 0.050 0.950 15 C 0.005 3.995 16 N -0.952 5.952 17 Si 0.935 3.065 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.248 1.248 21 C 0.088 3.912 22 C -0.130 4.130 23 C -0.179 4.179 24 C -0.156 4.156 25 H 0.121 0.879 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.137 0.863 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.010 0.990 36 H 0.016 0.984 37 H 0.262 0.738 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.029 0.971 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.314 10.958 -5.671 24.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.200 4.200 3 C 0.008 3.992 4 O -0.251 6.251 5 C 0.070 3.930 6 C -0.231 4.231 7 C -0.095 4.095 8 C -0.174 4.174 9 C -0.035 4.035 10 C -0.042 4.042 11 N -0.259 5.259 12 C 0.036 3.964 13 C -0.531 4.531 14 H 0.068 0.932 15 C -0.191 4.191 16 N -0.594 5.594 17 Si 0.760 3.240 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.172 1.172 21 C -0.020 4.020 22 C -0.187 4.187 23 C -0.237 4.237 24 C -0.175 4.175 25 H 0.139 0.861 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.168 0.832 31 H 0.174 0.826 32 H 0.154 0.846 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.027 0.973 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.298 10.249 -5.788 24.334 hybrid contribution 0.937 0.040 1.139 1.476 sum -20.361 10.289 -4.649 23.282 Atomic orbital electron populations 1.24107 0.94676 1.03871 0.96515 1.22715 0.96434 0.97402 1.03472 1.22031 0.87414 0.97718 0.92020 1.86076 1.43037 1.36278 1.59661 1.19074 0.91437 0.86760 0.95739 1.21453 1.04466 0.93752 1.03444 1.21238 0.93341 0.98104 0.96768 1.21179 0.99799 0.98401 0.98016 1.19612 0.94124 0.93080 0.96666 1.21151 0.88813 0.99430 0.94826 1.62061 1.05936 1.39251 1.18612 1.20124 0.90700 0.94704 0.90873 1.21418 1.10344 1.21221 1.00094 0.93165 1.25728 0.95911 0.95247 1.02238 1.70044 1.18841 1.31697 1.38823 0.85897 0.77253 0.80158 0.80739 1.19797 1.21267 1.17219 1.21586 0.96038 0.90315 0.94100 1.21891 0.99011 0.98817 0.99028 1.22398 1.01137 0.98923 1.01285 1.20316 0.96312 0.99329 1.01582 0.86113 0.86792 0.87154 0.89953 0.90384 0.83235 0.82619 0.84557 0.91175 0.92203 0.97275 0.96607 0.92878 0.89611 0.92894 0.95206 0.92299 0.90498 0.91818 0.93874 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 14.31 67.79 0.97 -0.90 16 2 C -0.18 -3.13 9.89 25.65 0.25 -2.87 16 3 C 0.08 1.55 5.15 71.24 0.37 1.92 16 4 O -0.34 -9.44 10.12 -92.42 -0.94 -10.38 16 5 C 0.11 3.30 6.69 22.51 0.15 3.45 16 6 C -0.21 -4.74 9.04 22.36 0.20 -4.54 16 7 C -0.08 -1.59 10.04 22.26 0.22 -1.37 16 8 C -0.16 -3.84 8.28 22.29 0.18 -3.65 16 9 C -0.03 -1.05 5.06 -19.88 -0.10 -1.15 16 10 C 0.09 2.85 5.02 85.56 0.43 3.28 16 11 N -0.53 -21.95 4.38 -880.05 -3.86 -25.80 16 12 C 0.16 7.71 3.60 85.56 0.31 8.01 16 13 C -0.49 -28.11 7.31 25.60 0.19 -27.93 16 14 H 0.05 3.20 6.16 -2.91 -0.02 3.19 16 15 C 0.00 0.28 5.47 84.66 0.46 0.74 16 16 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 17 Si 0.93 44.48 27.50 68.60 1.89 46.37 16 18 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.25 -10.91 6.50 99.48 0.65 -10.26 16 21 C 0.09 3.17 2.83 44.92 0.13 3.30 16 22 C -0.13 -5.37 7.77 71.98 0.56 -4.81 16 23 C -0.18 -5.60 8.42 71.98 0.61 -5.00 16 24 C -0.16 -5.14 9.65 22.37 0.22 -4.93 16 25 H 0.12 1.11 8.06 -2.91 -0.02 1.08 16 26 H 0.11 1.02 7.90 -2.91 -0.02 0.99 16 27 H 0.11 2.06 8.06 -2.91 -0.02 2.03 16 28 H 0.08 1.22 7.38 -2.38 -0.02 1.20 16 29 H 0.08 1.31 7.66 -2.39 -0.02 1.29 16 30 H 0.15 2.39 6.30 -2.91 -0.02 2.37 16 31 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 32 H 0.14 2.85 7.88 -2.92 -0.02 2.83 16 33 H 0.07 2.41 7.56 -2.39 -0.02 2.39 16 34 H 0.06 1.76 5.99 -2.39 -0.01 1.74 16 35 H 0.01 0.45 4.42 -2.39 -0.01 0.44 16 36 H 0.02 0.76 7.06 -2.39 -0.02 0.74 16 37 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 38 H 0.09 2.76 6.09 -2.39 -0.01 2.75 16 39 H 0.05 2.56 5.93 -2.39 -0.01 2.55 16 40 H 0.03 1.35 7.39 -2.39 -0.02 1.34 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.06 1.76 6.22 -2.39 -0.01 1.75 16 44 H 0.04 1.57 6.32 -2.38 -0.02 1.56 16 45 H 0.11 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -69.54 352.30 3.44 -66.10 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.90 Total: 19.99 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 5.15 Total: -36.45 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -3.56 Total: -85.63 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.94 Total: -10.38 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.89 Total: 46.37 kcal Total: -69.54 3.44 -66.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534342180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.881 kcal (2) G-P(sol) polarization free energy of solvation -69.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds