Wall clock time and date at job start Tue Mar 31 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46726 * 2 1 4 4 H 1.08995 * 109.47380 * 305.00094 * 3 2 1 5 5 C 1.50705 * 109.46849 * 184.99637 * 3 2 1 6 6 H 1.07997 * 119.99881 * 240.00085 * 5 3 2 7 7 C 1.37884 * 119.99646 * 60.00309 * 5 3 2 8 8 N 1.31513 * 119.99806 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99708 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46772 * 90.00273 * 9 7 5 11 11 H 1.48499 * 109.47050 * 209.99961 * 9 7 5 12 12 H 1.48501 * 109.47173 * 330.00401 * 9 7 5 13 13 N 1.46496 * 109.47042 * 65.00399 * 3 2 1 14 14 C 1.34780 * 119.99670 * 274.99614 * 13 3 2 15 15 O 1.21553 * 120.00087 * 0.02562 * 14 13 3 16 16 C 1.47848 * 119.99804 * 179.97438 * 14 13 3 17 17 C 1.39597 * 120.14621 * 0.02562 * 16 14 13 18 18 C 1.37933 * 119.85232 * 180.02562 * 17 16 14 19 19 C 1.38385 * 120.14761 * 0.02562 * 18 17 16 20 20 C 1.38342 * 120.29104 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.92514 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47122 * 359.97438 * 21 20 19 23 23 C 1.53003 * 109.47018 * 119.99908 * 21 20 19 24 24 C 1.53002 * 109.46501 * 239.99607 * 21 20 19 25 25 C 1.37979 * 120.14224 * 359.97438 * 20 19 18 26 26 H 1.09005 * 109.46587 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47105 * 299.99895 * 1 2 3 28 28 H 1.09002 * 109.47282 * 60.00119 * 1 2 3 29 29 H 1.08994 * 109.47578 * 240.00486 * 2 1 3 30 30 H 1.09002 * 109.47282 * 119.99881 * 2 1 3 31 31 H 0.97004 * 119.99441 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00370 * 94.99343 * 13 3 2 33 33 H 1.08000 * 120.07267 * 359.97438 * 17 16 14 34 34 H 1.08004 * 119.92729 * 179.97438 * 18 17 16 35 35 H 1.08001 * 119.85329 * 179.72332 * 19 18 17 36 36 H 1.08999 * 109.47031 * 60.00326 * 22 21 20 37 37 H 1.09003 * 109.46746 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.47370 * 299.99825 * 22 21 20 39 39 H 1.09004 * 109.47234 * 59.99942 * 23 21 20 40 40 H 1.09003 * 109.46692 * 179.97438 * 23 21 20 41 41 H 1.08999 * 109.47401 * 299.99837 * 23 21 20 42 42 H 1.09001 * 109.47290 * 60.00605 * 24 21 20 43 43 H 1.09003 * 109.46491 * 179.97438 * 24 21 20 44 44 H 1.08994 * 109.47497 * 300.00105 * 24 21 20 45 45 H 1.08000 * 120.06786 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1237 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8814 -1.3817 10 1 6.5548 -0.3500 -0.7602 11 1 6.3830 0.9226 -2.8172 12 1 6.5569 2.0739 -0.6900 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3414 2.6318 0.4323 16 6 0.0437 3.3248 2.6305 17 6 0.9328 3.3635 3.7060 18 6 0.5612 3.9808 4.8822 19 6 -0.6900 4.5605 4.9977 20 6 -1.5763 4.5247 3.9360 21 6 -2.9371 5.1581 4.0710 22 6 -3.0812 5.7639 5.4685 23 6 -3.0942 6.2580 3.0191 24 6 -4.0173 4.0949 3.8626 25 6 -1.2170 3.9104 2.7540 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0608 -2.9499 32 1 2.2719 2.1231 1.9978 33 1 1.9092 2.9104 3.6176 34 1 1.2481 4.0111 5.7152 35 1 -0.9777 5.0386 5.9223 36 1 -2.3116 6.5213 5.6174 37 1 -4.0657 6.2216 5.5663 38 1 -2.9695 4.9801 6.2177 39 1 -2.9917 5.8260 2.0236 40 1 -4.0787 6.7158 3.1165 41 1 -2.3246 7.0154 3.1676 42 1 -3.9054 3.3113 4.6120 43 1 -5.0016 4.5529 3.9607 44 1 -3.9147 3.6629 2.8671 45 1 -1.9097 3.8835 1.9258 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572255852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:30 Heat of formation + Delta-G solvation = -36.343744 kcal Electronic energy + Delta-G solvation = -23215.799546 eV Core-core repulsion = 20004.212175 eV Total energy + Delta-G solvation = -3211.587371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.12337 -38.62928 -36.20409 -35.02605 -32.44940 -31.39058 -30.69737 -29.72098 -27.66190 -27.35139 -26.85548 -23.69905 -23.07150 -22.37744 -20.56779 -19.58197 -18.91776 -17.50796 -16.45962 -15.75211 -15.30093 -14.97447 -14.80844 -14.55486 -14.33610 -14.28266 -13.76604 -13.52153 -13.18316 -12.79297 -12.68020 -12.30983 -12.25822 -11.90697 -11.81809 -11.73109 -11.65334 -11.45049 -11.24211 -11.07384 -10.99125 -10.83066 -10.79728 -10.55448 -10.31161 -10.16477 -9.62438 -9.07429 -9.01637 -8.78475 -8.66595 -8.49732 -7.80149 -6.11997 -4.21430 1.10759 1.44820 3.24400 3.31379 3.33437 3.36542 4.06666 4.22113 4.37347 4.46858 4.65507 4.85305 5.02698 5.05691 5.12535 5.19351 5.36045 5.38748 5.45273 5.49535 5.61707 5.63590 5.71661 5.76837 5.83478 5.89175 6.01194 6.11536 6.12751 6.18051 6.41086 6.48220 6.48335 6.55159 6.61767 6.68807 6.98774 7.06873 7.21948 7.37986 7.45919 7.62958 7.74724 7.91121 8.18634 8.67248 8.78125 9.13283 9.45884 10.93354 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026872 B = 0.003618 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.735754 B = 7737.808225 C = 8245.447366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.541 3.459 15 O -0.546 6.546 16 C -0.118 4.118 17 C -0.094 4.094 18 C -0.127 4.127 19 C -0.108 4.108 20 C -0.084 4.084 21 C -0.028 4.028 22 C -0.143 4.143 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.061 4.061 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.049 8.464 15.254 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.326 3.674 15 O -0.426 6.426 16 C -0.121 4.121 17 C -0.113 4.113 18 C -0.145 4.145 19 C -0.126 4.126 20 C -0.084 4.084 21 C -0.028 4.028 22 C -0.200 4.200 23 C -0.198 4.198 24 C -0.198 4.198 25 C -0.080 4.080 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.221 0.779 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.552 8.318 14.352 19.660 hybrid contribution 1.439 -0.108 0.274 1.469 sum -9.113 8.210 14.626 19.088 Atomic orbital electron populations 1.21845 0.98342 0.98044 1.01271 1.21936 0.92644 0.99740 1.02289 1.18816 0.94234 0.89213 0.80901 0.93187 1.21231 0.90684 1.39069 1.06332 0.92110 1.24884 0.98606 0.94806 0.95350 1.69898 1.35107 1.37560 1.09335 0.86456 0.84878 0.78437 0.77389 1.20545 1.21064 1.19858 1.46461 1.14401 1.55469 1.18556 1.18189 0.82979 0.79330 0.86879 1.90729 1.51550 1.60227 1.40048 1.20331 0.95451 1.01262 0.95096 1.21391 0.99133 0.98057 0.92732 1.21053 0.96691 0.99072 0.97679 1.21275 0.93584 0.99231 0.98521 1.19752 0.95637 0.99155 0.93831 1.19481 0.91810 0.95302 0.96199 1.21958 1.01736 1.00641 0.95638 1.21914 1.01519 0.97774 0.98578 1.21912 0.97342 0.98070 1.02447 1.21086 0.95205 0.94546 0.97136 0.95849 0.94263 0.93129 0.88236 0.95041 0.92558 0.77939 0.85560 0.85818 0.85663 0.92290 0.92425 0.92307 0.92020 0.92408 0.92486 0.92512 0.92410 0.92023 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.70 -14.92 4.97 -55.88 -0.28 -15.20 16 14 C 0.54 11.23 6.34 -12.33 -0.08 11.15 16 15 O -0.55 -13.03 13.48 5.32 0.07 -12.95 16 16 C -0.12 -1.97 5.87 -104.97 -0.62 -2.59 16 17 C -0.09 -1.31 9.54 -39.19 -0.37 -1.69 16 18 C -0.13 -1.47 10.03 -39.64 -0.40 -1.87 16 19 C -0.11 -1.20 8.97 -39.49 -0.35 -1.55 16 20 C -0.08 -1.02 4.76 -104.68 -0.50 -1.52 16 21 C -0.03 -0.27 0.85 -155.66 -0.13 -0.41 16 22 C -0.14 -1.11 7.13 37.16 0.26 -0.85 16 23 C -0.14 -1.36 8.29 37.16 0.31 -1.05 16 24 C -0.14 -1.35 8.28 37.16 0.31 -1.04 16 25 C -0.06 -0.92 8.25 -39.18 -0.32 -1.24 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.88 5.64 -51.93 -0.29 0.58 16 28 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 29 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.39 7.20 6.57 -40.82 -0.27 6.93 16 33 H 0.13 1.61 6.41 -52.49 -0.34 1.27 16 34 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 35 H 0.13 1.08 5.87 -52.49 -0.31 0.77 16 36 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 39 H 0.06 0.66 7.38 -51.93 -0.38 0.28 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.66 7.38 -51.93 -0.38 0.27 16 45 H 0.13 2.09 6.68 -52.49 -0.35 1.74 16 LS Contribution 352.59 15.07 5.31 5.31 Total: -1.00 -29.88 352.59 -8.70 -38.58 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.14 Total: 7.58 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -2.27 Total: -14.81 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.35 Total: -39.30 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.07 Total: -12.95 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.88 -8.70 -38.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572255852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.235 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds