Wall clock time and date at job start Tue Mar 31 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46726 * 2 1 4 4 H 1.08995 * 109.47380 * 305.00094 * 3 2 1 5 5 C 1.50705 * 109.46849 * 184.99637 * 3 2 1 6 6 H 1.07997 * 119.99881 * 240.00085 * 5 3 2 7 7 C 1.37884 * 119.99646 * 60.00309 * 5 3 2 8 8 N 1.31513 * 119.99806 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99708 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46772 * 90.00273 * 9 7 5 11 11 H 1.48499 * 109.47050 * 209.99961 * 9 7 5 12 12 H 1.48501 * 109.47173 * 330.00401 * 9 7 5 13 13 N 1.46496 * 109.47042 * 65.00399 * 3 2 1 14 14 C 1.34780 * 119.99670 * 274.99614 * 13 3 2 15 15 O 1.21553 * 120.00087 * 0.02562 * 14 13 3 16 16 C 1.47848 * 119.99804 * 179.97438 * 14 13 3 17 17 C 1.39597 * 120.14621 * 0.02562 * 16 14 13 18 18 C 1.37933 * 119.85232 * 180.02562 * 17 16 14 19 19 C 1.38385 * 120.14761 * 0.02562 * 18 17 16 20 20 C 1.38342 * 120.29104 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.92514 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47122 * 359.97438 * 21 20 19 23 23 C 1.53003 * 109.47018 * 119.99908 * 21 20 19 24 24 C 1.53002 * 109.46501 * 239.99607 * 21 20 19 25 25 C 1.37979 * 120.14224 * 359.97438 * 20 19 18 26 26 H 1.09005 * 109.46587 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47105 * 299.99895 * 1 2 3 28 28 H 1.09002 * 109.47282 * 60.00119 * 1 2 3 29 29 H 1.08994 * 109.47578 * 240.00486 * 2 1 3 30 30 H 1.09002 * 109.47282 * 119.99881 * 2 1 3 31 31 H 0.97004 * 119.99441 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00370 * 94.99343 * 13 3 2 33 33 H 1.08000 * 120.07267 * 359.97438 * 17 16 14 34 34 H 1.08004 * 119.92729 * 179.97438 * 18 17 16 35 35 H 1.08001 * 119.85329 * 179.72332 * 19 18 17 36 36 H 1.08999 * 109.47031 * 60.00326 * 22 21 20 37 37 H 1.09003 * 109.46746 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.47370 * 299.99825 * 22 21 20 39 39 H 1.09004 * 109.47234 * 59.99942 * 23 21 20 40 40 H 1.09003 * 109.46692 * 179.97438 * 23 21 20 41 41 H 1.08999 * 109.47401 * 299.99837 * 23 21 20 42 42 H 1.09001 * 109.47290 * 60.00605 * 24 21 20 43 43 H 1.09003 * 109.46491 * 179.97438 * 24 21 20 44 44 H 1.08994 * 109.47497 * 300.00105 * 24 21 20 45 45 H 1.08000 * 120.06786 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1237 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8814 -1.3817 10 1 6.5548 -0.3500 -0.7602 11 1 6.3830 0.9226 -2.8172 12 1 6.5569 2.0739 -0.6900 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3414 2.6318 0.4323 16 6 0.0437 3.3248 2.6305 17 6 0.9328 3.3635 3.7060 18 6 0.5612 3.9808 4.8822 19 6 -0.6900 4.5605 4.9977 20 6 -1.5763 4.5247 3.9360 21 6 -2.9371 5.1581 4.0710 22 6 -3.0812 5.7639 5.4685 23 6 -3.0942 6.2580 3.0191 24 6 -4.0173 4.0949 3.8626 25 6 -1.2170 3.9104 2.7540 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0608 -2.9499 32 1 2.2719 2.1231 1.9978 33 1 1.9092 2.9104 3.6176 34 1 1.2481 4.0111 5.7152 35 1 -0.9777 5.0386 5.9223 36 1 -2.3116 6.5213 5.6174 37 1 -4.0657 6.2216 5.5663 38 1 -2.9695 4.9801 6.2177 39 1 -2.9917 5.8260 2.0236 40 1 -4.0787 6.7158 3.1165 41 1 -2.3246 7.0154 3.1676 42 1 -3.9054 3.3113 4.6120 43 1 -5.0016 4.5529 3.9607 44 1 -3.9147 3.6629 2.8671 45 1 -1.9097 3.8835 1.9258 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572255852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:29 Heat of formation + Delta-G solvation = -52.637488 kcal Electronic energy + Delta-G solvation = -23216.506095 eV Core-core repulsion = 20004.212175 eV Total energy + Delta-G solvation = -3212.293920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35341 -40.04351 -37.21917 -36.87280 -34.35905 -33.06829 -31.97184 -30.86088 -28.99310 -28.19481 -28.11691 -25.35717 -24.42312 -23.65046 -21.99932 -21.32201 -20.26192 -18.84961 -17.96928 -17.35531 -16.92540 -16.29881 -16.24420 -15.84576 -15.71598 -15.13145 -14.93115 -14.71822 -14.61129 -14.36069 -14.05477 -13.62804 -13.41291 -13.20808 -13.08092 -12.93240 -12.87957 -12.68387 -12.66858 -12.53621 -12.52777 -12.19161 -12.08874 -11.82292 -11.65820 -11.62297 -11.40600 -11.07637 -10.75466 -10.54225 -9.93751 -9.71311 -9.58512 -8.17500 -6.35400 -0.04088 0.42961 1.44095 1.44990 1.55514 2.02072 2.34069 2.60016 2.94772 3.12010 3.61756 3.80945 3.91161 4.13212 4.14582 4.17690 4.37010 4.41479 4.45459 4.53349 4.56033 4.71552 4.77429 4.81101 4.87312 4.91672 5.00438 5.03425 5.05521 5.05822 5.18220 5.21610 5.26895 5.36517 5.40042 5.42700 5.45197 5.51336 5.55368 5.58973 5.67975 5.76371 5.90255 6.01063 6.13792 6.71656 6.94229 7.30864 7.51849 8.88115 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026872 B = 0.003618 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.735754 B = 7737.808225 C = 8245.447366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.550 4.550 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.699 5.699 14 C 0.537 3.463 15 O -0.588 6.588 16 C -0.147 4.147 17 C -0.098 4.098 18 C -0.118 4.118 19 C -0.094 4.094 20 C -0.083 4.083 21 C -0.029 4.029 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.074 4.074 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.025 0.975 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.402 0.598 33 H 0.135 0.865 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.039 0.961 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 9.545 18.930 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.015 0.985 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.797 3.203 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.347 5.347 14 C 0.326 3.674 15 O -0.471 6.471 16 C -0.150 4.150 17 C -0.117 4.117 18 C -0.136 4.136 19 C -0.112 4.112 20 C -0.083 4.083 21 C -0.029 4.029 22 C -0.197 4.197 23 C -0.198 4.198 24 C -0.197 4.197 25 C -0.093 4.093 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.237 0.763 33 H 0.153 0.847 34 H 0.179 0.821 35 H 0.179 0.821 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.058 0.942 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.966 9.410 18.069 22.679 hybrid contribution 1.166 -0.382 -0.831 1.481 sum -8.800 9.029 17.238 21.357 Atomic orbital electron populations 1.21678 0.97150 0.99153 1.00094 1.21787 0.93616 0.99094 1.01411 1.18412 0.93848 0.89181 0.81089 0.98459 1.21564 0.91216 1.39187 1.06882 0.91034 1.25792 1.03497 0.94267 0.94889 1.70053 1.37140 1.38222 1.09858 0.85341 0.78859 0.78926 0.77189 1.19517 1.21212 1.18893 1.46207 1.15203 1.55619 1.17693 1.18873 0.82045 0.78494 0.88016 1.90695 1.52614 1.61751 1.42047 1.20037 0.97175 1.03688 0.94099 1.21547 0.98954 0.98396 0.92781 1.21468 0.97402 0.97282 0.97453 1.21740 0.92795 0.97574 0.99092 1.20043 0.97149 0.98229 0.92889 1.19565 0.90319 0.95151 0.97839 1.21950 1.02947 1.01006 0.93765 1.21915 1.02625 0.97751 0.97490 1.21911 0.98389 0.98229 1.01211 1.21036 0.94493 0.95750 0.98058 0.93399 0.94182 0.95551 0.90721 0.94009 0.92533 0.76256 0.84704 0.82118 0.82079 0.91469 0.91074 0.91411 0.94228 0.90571 0.92435 0.92364 0.90594 0.94198 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.51 71.98 0.61 -5.24 16 2 C -0.12 -6.13 5.45 30.60 0.17 -5.96 16 3 C 0.28 14.78 2.24 44.25 0.10 14.88 16 4 H 0.00 -0.16 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -29.69 8.73 25.60 0.22 -29.47 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 7 C 0.02 0.86 5.29 84.66 0.45 1.30 16 8 N -0.91 -52.95 11.29 21.45 0.24 -52.71 16 9 Si 0.97 42.37 29.54 68.60 2.03 44.39 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 13 N -0.70 -30.76 4.97 -448.97 -2.23 -32.99 16 14 C 0.54 23.47 6.34 86.79 0.55 24.02 16 15 O -0.59 -30.23 13.48 -3.88 -0.05 -30.28 16 16 C -0.15 -5.00 5.87 -20.09 -0.12 -5.12 16 17 C -0.10 -2.58 9.54 22.53 0.21 -2.36 16 18 C -0.12 -2.29 10.03 22.23 0.22 -2.07 16 19 C -0.09 -1.73 8.97 22.33 0.20 -1.53 16 20 C -0.08 -1.89 4.76 -19.90 -0.09 -1.99 16 21 C -0.03 -0.51 0.85 -52.93 -0.05 -0.55 16 22 C -0.14 -1.62 7.13 71.98 0.51 -1.11 16 23 C -0.14 -2.57 8.29 71.98 0.60 -1.97 16 24 C -0.14 -2.53 8.28 71.98 0.60 -1.93 16 25 C -0.07 -2.30 8.25 22.53 0.19 -2.11 16 26 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 28 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 29 H 0.07 4.21 5.95 -2.39 -0.01 4.20 16 30 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.40 15.04 6.57 -92.71 -0.61 14.43 16 33 H 0.14 3.21 6.41 -2.91 -0.02 3.19 16 34 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.16 1.86 5.87 -2.91 -0.02 1.84 16 36 H 0.07 0.69 7.51 -2.39 -0.02 0.67 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.69 7.51 -2.39 -0.02 0.67 16 39 H 0.04 0.88 7.38 -2.39 -0.02 0.87 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.04 0.88 7.38 -2.39 -0.02 0.86 16 45 H 0.11 3.82 6.68 -2.91 -0.02 3.80 16 Total: -1.00 -68.67 352.59 4.72 -63.95 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.37 Total: 28.85 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 4.37 Total: -21.21 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -1.99 Total: -85.70 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.05 Total: -30.28 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -68.67 4.72 -63.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572255852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.309 kcal (2) G-P(sol) polarization free energy of solvation -68.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds