Wall clock time and date at job start Tue Mar 31 2020 06:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99941 * 2 1 4 4 N 1.46897 * 109.47092 * 124.16235 * 3 2 1 5 5 C 1.46901 * 111.00269 * 301.33233 * 4 3 2 6 6 C 1.50695 * 109.47061 * 289.39516 * 5 4 3 7 7 H 1.07996 * 120.00115 * 355.37070 * 6 5 4 8 8 C 1.37882 * 120.00316 * 175.37054 * 6 5 4 9 9 N 1.31514 * 119.99444 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00309 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47307 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47391 * 120.00113 * 10 8 6 13 13 H 1.48500 * 109.47329 * 240.00038 * 10 8 6 14 14 C 1.46901 * 110.99989 * 65.28782 * 4 3 2 15 15 C 1.50697 * 109.47485 * 66.04271 * 14 4 3 16 16 C 1.38259 * 119.94794 * 270.30275 * 15 14 4 17 17 C 1.38139 * 120.05774 * 180.29509 * 16 15 14 18 18 C 1.38728 * 119.94426 * 359.42703 * 17 16 15 19 19 O 1.35903 * 120.05813 * 180.29770 * 18 17 16 20 20 C 1.42906 * 116.99827 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.46774 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47064 * 179.97438 * 21 20 19 23 23 C 1.38733 * 119.88737 * 0.27425 * 18 17 16 24 24 C 1.38148 * 119.94592 * 359.97438 * 23 18 17 25 25 H 1.07998 * 119.99752 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99968 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00088 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47297 * 4.16116 * 3 2 1 29 29 H 1.09004 * 109.47062 * 244.16169 * 3 2 1 30 30 H 1.09002 * 109.47006 * 49.39350 * 5 4 3 31 31 H 1.08999 * 109.47509 * 169.39564 * 5 4 3 32 32 H 0.97006 * 120.00046 * 180.02562 * 9 8 6 33 33 H 1.09008 * 109.46987 * 306.04086 * 14 4 3 34 34 H 1.09002 * 109.47093 * 186.04891 * 14 4 3 35 35 H 1.08001 * 119.97206 * 0.02562 * 16 15 14 36 36 H 1.08005 * 120.03027 * 179.69720 * 17 16 15 37 37 H 1.08992 * 109.47225 * 299.99977 * 20 19 18 38 38 H 1.09003 * 109.46855 * 60.00355 * 20 19 18 39 39 H 1.09000 * 109.47169 * 299.99862 * 21 20 19 40 40 H 1.08995 * 109.47095 * 60.00270 * 21 20 19 41 41 H 1.08996 * 109.47483 * 300.00618 * 22 21 20 42 42 H 1.09009 * 109.46953 * 60.00206 * 22 21 20 43 43 H 1.08994 * 109.47572 * 179.97438 * 22 21 20 44 44 H 1.08004 * 120.02698 * 180.02562 * 23 18 17 45 45 H 1.07996 * 119.97319 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9818 1.3403 1.1460 5 6 2.2510 1.1885 2.4112 6 6 1.4497 2.4359 2.6812 7 1 1.5378 3.2874 2.0227 8 6 0.6040 2.4902 3.7688 9 7 0.4971 1.4535 4.5710 10 14 -0.3887 4.0366 4.1039 11 1 -0.0903 5.0519 3.0620 12 1 -1.8372 3.7108 4.0762 13 1 -0.0282 4.5766 5.4395 14 6 4.0264 0.3157 1.0152 15 6 4.9085 0.6449 -0.1614 16 6 4.5924 0.1615 -1.4176 17 6 5.4028 0.4568 -2.4966 18 6 6.5282 1.2489 -2.3212 19 8 7.3237 1.5458 -3.3823 20 6 8.4652 2.3670 -3.1276 21 6 9.2335 2.5908 -4.4317 22 6 10.4553 3.4705 -4.1592 23 6 6.8398 1.7378 -1.0609 24 6 6.0290 1.4354 0.0160 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3576 2.1322 0.0746 29 1 2.6331 1.3958 -0.9250 30 1 1.5792 0.3329 2.3423 31 1 2.9600 1.0293 3.2236 32 1 -0.0981 1.4915 5.3360 33 1 3.5624 -0.6585 0.8602 34 1 4.6273 0.2913 1.9243 35 1 3.7135 -0.4510 -1.5546 36 1 5.1581 0.0750 -3.4769 37 1 8.1400 3.3273 -2.7276 38 1 9.1140 1.8729 -2.4043 39 1 9.5588 1.6303 -4.8313 40 1 8.5850 3.0846 -5.1553 41 1 10.1297 4.4310 -3.7597 42 1 11.1041 2.9771 -3.4353 43 1 11.0029 3.6297 -5.0880 44 1 7.7152 2.3550 -0.9218 45 1 6.2710 1.8160 0.9972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577929335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:58 Heat of formation + Delta-G solvation = 1.560502 kcal Electronic energy + Delta-G solvation = -22483.478081 eV Core-core repulsion = 19273.534362 eV Total energy + Delta-G solvation = -3209.943719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12274 -38.28470 -36.60330 -34.18141 -32.77963 -32.29401 -30.86698 -30.21412 -27.24895 -26.78243 -25.70475 -23.65616 -22.95656 -21.50339 -21.05712 -20.70296 -18.74099 -18.11712 -16.43672 -16.24653 -16.03874 -15.32524 -14.99068 -14.69555 -14.35574 -14.26428 -14.08158 -13.94408 -13.63512 -13.26106 -12.78094 -12.65588 -12.42958 -12.38794 -12.13275 -11.48711 -11.46520 -11.36541 -11.26530 -11.04744 -10.90587 -10.74730 -10.67633 -10.55471 -10.48290 -10.39007 -9.89508 -9.19935 -8.83054 -8.64493 -8.38515 -7.92035 -7.17611 -5.98469 -3.98849 1.52632 1.62479 2.93656 3.12036 3.32419 3.40073 3.45096 3.93279 4.46703 4.57451 4.58169 4.90317 4.96348 4.99302 5.11281 5.14977 5.16207 5.32004 5.34433 5.37535 5.53015 5.55679 5.60372 5.61988 5.72945 5.73260 5.80546 5.89471 5.99208 6.13174 6.25812 6.29427 6.44993 6.46819 6.55011 6.72251 6.93566 6.95784 7.20042 7.29258 7.38746 7.48021 7.49031 7.85878 8.12792 8.23711 8.58897 9.09388 9.64813 11.12111 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.003129 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.776193 B = 8945.299355 C = 9566.295013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.181 4.181 3 C 0.087 3.913 4 N -0.524 5.524 5 C 0.189 3.811 6 C -0.499 4.499 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.089 3.911 15 C -0.095 4.095 16 C -0.076 4.076 17 C -0.154 4.154 18 C 0.117 3.883 19 O -0.321 6.321 20 C 0.059 3.941 21 C -0.123 4.123 22 C -0.150 4.150 23 C -0.209 4.209 24 C -0.060 4.060 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.006 0.994 31 H 0.023 0.977 32 H 0.259 0.741 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.122 0.878 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.726 -1.136 -15.491 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.200 4.200 3 C -0.041 4.041 4 N -0.246 5.246 5 C 0.065 3.935 6 C -0.538 4.538 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.039 4.039 15 C -0.096 4.096 16 C -0.094 4.094 17 C -0.173 4.173 18 C 0.072 3.928 19 O -0.235 6.235 20 C -0.016 4.016 21 C -0.161 4.161 22 C -0.207 4.207 23 C -0.228 4.228 24 C -0.079 4.079 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.024 0.976 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.140 0.860 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.866 -0.766 -15.492 21.485 hybrid contribution -0.960 0.053 0.621 1.145 sum 13.906 -0.713 -14.871 20.372 Atomic orbital electron populations 1.23685 0.96054 1.01079 1.00769 1.23531 0.96699 0.99766 1.00051 1.21292 0.94601 0.94245 0.93943 1.62450 1.13008 1.45068 1.04111 1.19792 0.92339 0.97076 0.84318 1.21157 1.22814 0.99749 1.10096 0.92000 1.24962 0.97081 0.96312 0.96222 1.69969 1.38516 1.29596 1.15786 0.86506 0.79750 0.83429 0.78136 1.19690 1.21192 1.21110 1.21013 0.93597 0.94086 0.95173 1.19890 0.96030 0.98616 0.95062 1.20908 0.98150 0.98774 0.91617 1.20321 0.94819 1.02329 0.99832 1.18923 0.91538 0.96180 0.86129 1.86009 1.37186 1.67069 1.33227 1.22820 0.86085 0.94155 0.98574 1.21477 0.96798 1.01206 0.96604 1.21693 0.97128 0.99711 1.02210 1.21177 1.02967 1.06055 0.92597 1.20857 0.93344 0.95272 0.98422 0.88510 0.89755 0.88724 0.89997 0.91693 0.97628 0.95931 0.93122 0.94739 0.90696 0.85657 0.85733 0.92069 0.92203 0.90955 0.90888 0.92295 0.92379 0.91826 0.85988 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 14.32 29.01 0.42 -2.77 16 2 C -0.18 -3.30 7.39 -36.03 -0.27 -3.56 16 3 C 0.09 1.70 5.32 -4.98 -0.03 1.67 16 4 N -0.52 -11.14 4.66 -238.96 -1.11 -12.25 16 5 C 0.19 4.86 4.56 -4.98 -0.02 4.84 16 6 C -0.50 -13.94 8.52 -34.44 -0.29 -14.23 16 7 H 0.06 1.74 7.57 -52.49 -0.40 1.34 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 10 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.09 1.60 4.96 -4.98 -0.02 1.57 16 15 C -0.10 -1.50 4.90 -104.60 -0.51 -2.02 16 16 C -0.08 -1.09 7.87 -39.61 -0.31 -1.40 16 17 C -0.15 -2.11 9.99 -39.44 -0.39 -2.51 16 18 C 0.12 1.61 6.69 -39.22 -0.26 1.35 16 19 O -0.32 -4.05 10.14 -19.44 -0.20 -4.25 16 20 C 0.06 0.55 4.74 37.16 0.18 0.73 16 21 C -0.12 -0.91 6.30 -26.73 -0.17 -1.08 16 22 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 23 C -0.21 -2.80 9.04 -39.43 -0.36 -3.16 16 24 C -0.06 -0.89 9.69 -39.60 -0.38 -1.28 16 25 H 0.10 1.78 7.84 -52.49 -0.41 1.37 16 26 H 0.08 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.09 1.61 6.84 -52.49 -0.36 1.25 16 28 H 0.08 1.75 6.96 -51.93 -0.36 1.38 16 29 H 0.06 1.15 5.77 -51.93 -0.30 0.85 16 30 H 0.01 0.16 6.70 -51.93 -0.35 -0.19 16 31 H 0.02 0.62 7.84 -51.93 -0.41 0.21 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.03 0.60 6.34 -51.92 -0.33 0.27 16 34 H 0.07 1.34 7.82 -51.93 -0.41 0.93 16 35 H 0.13 1.68 7.92 -52.49 -0.42 1.26 16 36 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 37 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 38 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.12 1.36 6.30 -52.48 -0.33 1.03 16 45 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -30.33 365.01 -9.63 -39.96 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.38 Total: 1.11 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -2.16 Total: -20.88 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.38 Total: -38.16 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.20 Total: -4.25 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.33 -9.63 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577929335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.523 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds