Wall clock time and date at job start Tue Mar 31 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47373 * 2 1 4 4 H 1.08997 * 109.47127 * 303.35036 * 3 2 1 5 5 C 1.53003 * 109.47410 * 183.34965 * 3 2 1 6 6 C 1.50693 * 109.46909 * 64.99943 * 5 3 2 7 7 O 1.21280 * 120.00389 * 0.02562 * 6 5 3 8 8 N 1.34782 * 119.99681 * 179.97438 * 6 5 3 9 9 C 1.39126 * 119.99989 * 184.02821 * 8 6 5 10 10 C 1.38649 * 120.28608 * 328.45483 * 9 8 6 11 11 C 1.38227 * 120.03313 * 180.25690 * 10 9 8 12 12 C 1.38867 * 120.61593 * 359.73727 * 11 10 9 13 13 C 1.36465 * 120.57722 * 359.97438 * 12 11 10 14 14 C 1.40735 * 119.94196 * 0.02562 * 13 12 11 15 15 C 1.41072 * 120.29843 * 179.97438 * 14 13 12 16 16 H 1.08008 * 119.99649 * 196.69191 * 15 14 13 17 17 C 1.39952 * 120.00317 * 16.69043 * 15 14 13 18 18 N 1.30850 * 119.99878 * 31.22930 * 17 15 14 19 19 Si 1.86796 * 120.00088 * 211.23080 * 17 15 14 20 20 H 1.48500 * 109.47352 * 265.00034 * 19 17 15 21 21 H 1.48493 * 109.47552 * 25.00257 * 19 17 15 22 22 H 1.48509 * 109.47159 * 145.00341 * 19 17 15 23 23 C 1.52999 * 109.47103 * 63.34787 * 3 2 1 24 24 C 1.53001 * 109.47059 * 66.40997 * 23 3 2 25 25 C 1.53000 * 109.47288 * 186.41277 * 23 3 2 26 26 H 1.08999 * 109.47292 * 303.52443 * 1 2 3 27 27 H 1.08999 * 109.47100 * 63.52704 * 1 2 3 28 28 H 1.08999 * 109.46733 * 183.52554 * 1 2 3 29 29 H 1.09004 * 109.47554 * 240.00094 * 2 1 3 30 30 H 1.09003 * 109.47576 * 120.00288 * 2 1 3 31 31 H 1.08999 * 109.46715 * 304.99998 * 5 3 2 32 32 H 1.09003 * 109.46954 * 185.00132 * 5 3 2 33 33 H 0.96992 * 120.00109 * 4.03483 * 8 6 5 34 34 H 1.07999 * 119.98051 * 359.96826 * 10 9 8 35 35 H 1.07999 * 119.69088 * 179.75467 * 11 10 9 36 36 H 1.07995 * 119.70846 * 180.02562 * 12 11 10 37 37 H 1.07994 * 120.02955 * 180.02562 * 13 12 11 38 38 H 0.97002 * 120.00107 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47430 * 306.41174 * 23 3 2 40 40 H 1.08993 * 109.47133 * 60.00128 * 24 23 3 41 41 H 1.08996 * 109.47471 * 180.02562 * 24 23 3 42 42 H 1.09000 * 109.47124 * 300.00019 * 24 23 3 43 43 H 1.09001 * 109.46832 * 303.22938 * 25 23 3 44 44 H 1.08991 * 109.47317 * 63.23306 * 25 23 3 45 45 H 1.09001 * 109.46995 * 183.23344 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6285 1.9733 -0.8584 5 6 3.5677 1.4433 -0.0843 6 6 3.9980 0.8683 -1.4091 7 8 3.1648 0.4950 -2.2075 8 7 5.3087 0.7698 -1.7071 9 6 5.7047 0.3175 -2.9618 10 6 4.9300 -0.6040 -3.6495 11 6 5.3311 -1.0538 -4.8935 12 6 6.5054 -0.5872 -5.4694 13 6 7.2840 0.3243 -4.8172 14 6 6.8983 0.7984 -3.5496 15 6 7.6977 1.7403 -2.8685 16 1 7.5591 1.9009 -1.8094 17 6 8.6703 2.4666 -3.5650 18 7 8.4844 2.7684 -4.8246 19 14 10.2340 3.0051 -2.6966 20 1 10.0678 4.3920 -2.1923 21 1 10.5064 2.0933 -1.5566 22 1 11.3713 2.9584 -3.6505 23 6 1.6000 2.1390 1.2892 24 6 2.3044 1.4929 2.4839 25 6 1.9702 3.6219 1.2197 26 1 -0.3634 0.5676 0.8567 27 1 -0.3633 0.4581 -0.9199 28 1 -0.3633 -1.0257 0.0632 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.9765 0.8377 0.7246 32 1 3.9360 2.4653 0.0051 33 1 5.9759 1.0141 -1.0469 34 1 4.0150 -0.9740 -3.2110 35 1 4.7254 -1.7746 -5.4226 36 1 6.8047 -0.9483 -6.4422 37 1 8.1953 0.6815 -5.2735 38 1 9.1586 3.2715 -5.3074 39 1 0.5209 2.0390 1.4062 40 1 3.3834 1.5929 2.3671 41 1 1.9906 1.9888 3.4025 42 1 2.0406 0.4365 2.5335 43 1 3.0416 3.7211 1.0454 44 1 1.4240 4.0949 0.4037 45 1 1.7088 4.1061 2.1606 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583405009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:31 Heat of formation + Delta-G solvation = -58.610275 kcal Electronic energy + Delta-G solvation = -23355.427947 eV Core-core repulsion = 20142.875027 eV Total energy + Delta-G solvation = -3212.552920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33278 -39.47867 -38.21809 -35.61622 -35.37484 -33.16158 -31.67461 -31.48855 -29.71261 -27.97373 -27.15938 -25.72353 -23.41588 -23.12160 -22.49404 -21.03018 -19.51955 -19.23571 -18.43063 -17.71388 -16.90679 -16.35792 -16.18521 -15.91220 -15.78550 -14.99452 -14.70080 -14.61083 -14.43828 -14.37128 -13.89395 -13.80695 -13.61115 -13.57384 -13.17749 -12.89588 -12.84960 -12.68789 -12.50247 -12.27084 -12.18482 -12.08571 -11.89086 -11.79237 -11.58618 -11.30206 -11.14490 -11.07229 -10.90530 -10.76544 -10.29576 -9.43580 -8.85728 -8.66379 -6.21880 0.89754 1.06791 1.40491 1.50964 1.60496 1.93380 2.18528 2.54693 2.69330 3.71119 3.76494 3.88890 3.95180 4.20903 4.37738 4.39685 4.48333 4.52838 4.59708 4.61894 4.65612 4.79364 4.86334 4.86989 4.92316 4.95810 5.07270 5.10805 5.16329 5.22449 5.23375 5.27522 5.30265 5.38455 5.41346 5.49446 5.57973 5.60110 5.70960 5.75286 5.88073 6.18035 6.21945 6.26389 6.65251 6.72734 6.96072 7.05836 7.54113 8.21315 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016307 B = 0.004566 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.619412 B = 6131.147715 C = 7476.441116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C -0.060 4.060 4 H 0.050 0.950 5 C -0.127 4.127 6 C 0.491 3.509 7 O -0.571 6.571 8 N -0.640 5.640 9 C -0.004 4.004 10 C -0.096 4.096 11 C -0.252 4.252 12 C -0.110 4.110 13 C -0.201 4.201 14 C 0.078 3.922 15 C -0.490 4.490 16 H 0.090 0.910 17 C 0.048 3.952 18 N -0.801 5.801 19 Si 0.976 3.024 20 H -0.261 1.261 21 H -0.252 1.252 22 H -0.270 1.270 23 C -0.087 4.087 24 C -0.151 4.151 25 C -0.152 4.152 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.410 0.590 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.292 0.708 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 0.997 14.201 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.079 4.079 4 H 0.069 0.931 5 C -0.167 4.167 6 C 0.281 3.719 7 O -0.451 6.451 8 N -0.283 5.283 9 C -0.098 4.098 10 C -0.116 4.116 11 C -0.271 4.271 12 C -0.128 4.128 13 C -0.221 4.221 14 C 0.075 3.925 15 C -0.517 4.517 16 H 0.108 0.892 17 C -0.172 4.172 18 N -0.425 5.425 19 Si 0.796 3.204 20 H -0.185 1.185 21 H -0.176 1.176 22 H -0.195 1.195 23 C -0.105 4.105 24 C -0.208 4.208 25 C -0.210 4.210 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.246 0.754 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.180 0.903 13.472 15.292 hybrid contribution 0.995 0.345 -0.320 1.101 sum -6.185 1.248 13.152 14.587 Atomic orbital electron populations 1.21756 0.95305 1.01628 1.01578 1.21671 0.96600 0.96335 1.01705 1.20878 0.92260 0.96660 0.98057 0.93102 1.21879 0.98508 1.03300 0.92975 1.21573 0.81490 0.78430 0.90413 1.90574 1.52187 1.50383 1.51991 1.42965 1.07750 1.63959 1.13637 1.17758 0.98003 1.03952 0.90102 1.20879 0.98850 0.96029 0.95867 1.20517 1.00444 1.08062 0.98123 1.20642 0.95480 0.97816 0.98883 1.20802 1.01519 1.01884 0.97894 1.17705 0.90618 0.92013 0.92209 1.19580 1.16321 1.18827 0.96989 0.89176 1.26815 1.02075 0.93192 0.95100 1.69973 1.34265 1.26026 1.12219 0.85295 0.76381 0.79297 0.79434 1.18514 1.17570 1.19485 1.21155 1.00869 0.94820 0.93671 1.21960 1.00887 1.00826 0.97172 1.21932 1.01654 0.95486 1.01889 0.91068 0.94206 0.92684 0.93416 0.91159 0.86629 0.87561 0.75382 0.87103 0.87435 0.87433 0.87926 0.89687 0.90167 0.92104 0.91767 0.92311 0.92566 0.93542 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.73 71.98 0.70 -2.48 16 2 C -0.13 -3.19 5.05 30.59 0.15 -3.04 16 3 C -0.06 -1.46 1.29 -10.79 -0.01 -1.47 16 4 H 0.05 1.52 7.95 -2.39 -0.02 1.50 16 5 C -0.13 -3.27 4.35 29.85 0.13 -3.14 16 6 C 0.49 18.54 7.38 87.65 0.65 19.18 16 7 O -0.57 -25.67 11.21 -3.03 -0.03 -25.71 16 8 N -0.64 -26.18 5.06 -302.28 -1.53 -27.71 16 9 C 0.00 -0.19 6.39 38.88 0.25 0.06 16 10 C -0.10 -4.83 8.71 22.37 0.19 -4.63 16 11 C -0.25 -12.24 10.04 22.42 0.23 -12.02 16 12 C -0.11 -5.40 9.97 22.01 0.22 -5.18 16 13 C -0.20 -10.72 8.76 22.47 0.20 -10.53 16 14 C 0.08 4.16 5.64 -21.18 -0.12 4.04 16 15 C -0.49 -24.42 8.66 23.38 0.20 -24.21 16 16 H 0.09 4.07 6.69 -2.91 -0.02 4.05 16 17 C 0.05 2.25 4.88 85.25 0.42 2.66 16 18 N -0.80 -40.31 11.34 21.83 0.25 -40.07 16 19 Si 0.98 35.11 29.66 68.60 2.03 37.15 16 20 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 21 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 22 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 23 C -0.09 -1.55 2.55 -10.79 -0.03 -1.58 16 24 C -0.15 -2.26 8.45 71.98 0.61 -1.65 16 25 C -0.15 -2.65 9.05 71.98 0.65 -2.00 16 26 H 0.07 1.26 6.22 -2.39 -0.01 1.24 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.58 5.90 -2.38 -0.01 1.57 16 30 H 0.07 1.54 6.47 -2.39 -0.02 1.52 16 31 H 0.12 2.39 6.64 -2.39 -0.02 2.38 16 32 H 0.11 2.46 6.34 -2.39 -0.02 2.45 16 33 H 0.41 14.48 7.35 -92.71 -0.68 13.79 16 34 H 0.11 5.54 5.97 -2.91 -0.02 5.52 16 35 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 36 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 37 H 0.10 5.58 6.11 -2.91 -0.02 5.57 16 38 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 39 H 0.08 1.35 6.15 -2.39 -0.01 1.34 16 40 H 0.06 0.88 6.44 -2.39 -0.02 0.87 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.87 6.54 -2.39 -0.02 0.86 16 43 H 0.06 1.00 6.38 -2.39 -0.02 0.98 16 44 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -62.96 345.76 5.47 -57.49 By element: Atomic # 1 Polarization: 44.51 SS G_CDS: 0.32 Total: 44.83 kcal Atomic # 6 Polarization: -50.42 SS G_CDS: 4.43 Total: -45.99 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -1.28 Total: -67.77 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.03 Total: -25.71 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.15 kcal Total: -62.96 5.47 -57.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583405009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.119 kcal (2) G-P(sol) polarization free energy of solvation -62.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds