Wall clock time and date at job start Tue Mar 31 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46916 * 2 1 4 4 H 1.08999 * 109.47131 * 184.86257 * 3 2 1 5 5 C 1.53006 * 109.47220 * 304.86118 * 3 2 1 6 6 C 1.50700 * 109.46602 * 293.47728 * 5 3 2 7 7 O 1.21279 * 120.00520 * 2.99558 * 6 5 3 8 8 N 1.34782 * 119.99812 * 182.99061 * 6 5 3 9 9 C 1.39124 * 120.00104 * 185.05287 * 8 6 5 10 10 C 1.38647 * 120.28863 * 325.95506 * 9 8 6 11 11 C 1.38218 * 120.03496 * 180.25558 * 10 9 8 12 12 C 1.38865 * 120.61715 * 359.73194 * 11 10 9 13 13 C 1.36464 * 120.57519 * 0.02562 * 12 11 10 14 14 C 1.40731 * 119.94437 * 359.97438 * 13 12 11 15 15 C 1.41074 * 120.30041 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99932 * 154.66163 * 15 14 13 17 17 C 1.39961 * 120.00141 * 334.65395 * 15 14 13 18 18 N 1.30856 * 119.99682 * 334.63323 * 17 15 14 19 19 Si 1.86792 * 120.00098 * 154.63763 * 17 15 14 20 20 H 1.48491 * 109.47438 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47184 * 300.00236 * 19 17 15 22 22 H 1.48507 * 109.47120 * 60.00009 * 19 17 15 23 23 C 1.52998 * 109.47474 * 64.86178 * 3 2 1 24 24 C 1.52999 * 109.47457 * 59.99443 * 23 3 2 25 25 C 1.53001 * 109.47474 * 180.02562 * 23 3 2 26 26 H 1.09003 * 109.47845 * 65.24207 * 1 2 3 27 27 H 1.08996 * 109.47300 * 185.24440 * 1 2 3 28 28 H 1.09008 * 109.47568 * 305.24446 * 1 2 3 29 29 H 1.08997 * 109.46952 * 240.00272 * 2 1 3 30 30 H 1.09001 * 109.47195 * 119.99646 * 2 1 3 31 31 H 1.09001 * 109.46885 * 173.48396 * 5 3 2 32 32 H 1.08994 * 109.47410 * 53.47578 * 5 3 2 33 33 H 0.97003 * 119.99865 * 5.06275 * 8 6 5 34 34 H 1.08003 * 119.97990 * 359.96682 * 10 9 8 35 35 H 1.08002 * 119.69428 * 179.76242 * 11 10 9 36 36 H 1.08001 * 119.71391 * 180.02562 * 12 11 10 37 37 H 1.08004 * 120.02832 * 180.02562 * 13 12 11 38 38 H 0.96999 * 119.99766 * 354.23228 * 18 17 15 39 39 H 1.09003 * 109.46857 * 299.99690 * 23 3 2 40 40 H 1.08999 * 109.46430 * 60.00360 * 24 23 3 41 41 H 1.08992 * 109.47462 * 180.02562 * 24 23 3 42 42 H 1.08999 * 109.46929 * 300.00844 * 24 23 3 43 43 H 1.09001 * 109.46827 * 59.99664 * 25 23 3 44 44 H 1.09002 * 109.47241 * 179.97438 * 25 23 3 45 45 H 1.08999 * 109.47131 * 300.00079 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1264 1.4438 -0.0871 5 6 1.4325 2.1982 -1.1837 6 6 1.9618 1.6226 -2.4719 7 8 2.7048 0.6644 -2.4480 8 7 1.6093 2.1727 -3.6508 9 6 2.0116 1.5795 -4.8432 10 6 3.2384 0.9389 -4.9265 11 6 3.6351 0.3559 -6.1153 12 6 2.8126 0.3992 -7.2333 13 6 1.5980 1.0188 -7.1780 14 6 1.1702 1.6203 -5.9797 15 6 -0.0837 2.2633 -5.9143 16 1 -0.5930 2.3584 -4.9666 17 6 -0.6678 2.7782 -7.0773 18 7 0.0855 3.1224 -8.0905 19 14 -2.5223 2.9742 -7.1833 20 1 -2.8859 3.5355 -8.5091 21 1 -3.1707 1.6492 -7.0125 22 1 -2.9849 3.8933 -6.1124 23 6 1.6322 2.1277 1.3058 24 6 2.2394 1.3720 2.4895 25 6 2.1416 3.5704 1.3056 26 1 -0.3635 0.4304 -0.9332 27 1 -0.3634 -1.0233 0.0939 28 1 -0.3634 0.5931 0.8393 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7023 3.2523 -1.1188 32 1 0.3474 2.0987 -1.1600 33 1 1.0752 2.9823 -3.6679 34 1 3.8863 0.8994 -4.0633 35 1 4.5935 -0.1384 -6.1751 36 1 3.1370 -0.0615 -8.1547 37 1 0.9653 1.0469 -8.0528 38 1 1.0516 3.0999 -8.0062 39 1 0.5456 2.1265 1.3929 40 1 3.3259 1.3733 2.4024 41 1 1.9486 1.8599 3.4198 42 1 1.8761 0.3444 2.4895 43 1 1.7085 4.1084 0.4623 44 1 1.8507 4.0586 2.2357 45 1 3.2281 3.5721 1.2182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583405010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:34 Heat of formation + Delta-G solvation = -51.204215 kcal Electronic energy + Delta-G solvation = -23454.900148 eV Core-core repulsion = 20242.668379 eV Total energy + Delta-G solvation = -3212.231769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.92682 -38.17916 -36.91445 -33.94426 -33.74274 -32.46230 -30.21648 -29.33030 -28.24819 -27.05679 -25.34431 -24.71233 -22.31819 -21.53722 -20.85636 -19.41395 -18.71113 -17.97148 -16.64978 -16.21021 -15.60725 -15.06451 -14.72721 -14.56058 -14.15461 -14.02332 -13.75693 -13.35164 -12.90503 -12.84822 -12.56470 -12.42482 -12.23513 -12.20529 -11.97362 -11.81027 -11.52213 -11.41290 -11.29562 -11.02808 -10.81470 -10.68858 -10.45354 -10.37382 -10.34855 -10.19962 -10.05190 -9.67232 -9.29455 -9.00788 -8.71761 -7.60825 -7.37913 -6.93744 -4.46974 2.59917 2.80858 3.11162 3.22909 3.31793 3.39817 3.94352 3.97221 4.54584 4.74630 4.78715 4.86859 5.09946 5.32880 5.36490 5.44837 5.48239 5.52522 5.53236 5.64546 5.70258 5.74091 5.78994 5.88620 6.02287 6.02803 6.07955 6.18054 6.21542 6.27370 6.35119 6.42770 6.49658 6.54414 6.68962 6.87064 6.97461 7.17800 7.40243 7.55069 7.73416 7.79272 7.93464 8.03953 8.24631 8.39323 8.70397 8.79542 9.03237 10.00116 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016593 B = 0.004503 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.020115 B = 6216.396712 C = 7194.701637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.128 4.128 3 C -0.062 4.062 4 H 0.075 0.925 5 C -0.143 4.143 6 C 0.498 3.502 7 O -0.539 6.539 8 N -0.640 5.640 9 C 0.009 3.991 10 C -0.075 4.075 11 C -0.241 4.241 12 C -0.093 4.093 13 C -0.208 4.208 14 C 0.090 3.910 15 C -0.527 4.527 16 H 0.073 0.927 17 C 0.041 3.959 18 N -0.795 5.795 19 Si 1.063 2.937 20 H -0.274 1.274 21 H -0.275 1.275 22 H -0.276 1.276 23 C -0.095 4.095 24 C -0.147 4.147 25 C -0.152 4.152 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.401 0.599 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.300 0.700 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.631 1.230 14.413 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.165 4.165 3 C -0.081 4.081 4 H 0.094 0.906 5 C -0.183 4.183 6 C 0.285 3.715 7 O -0.417 6.417 8 N -0.282 5.282 9 C -0.085 4.085 10 C -0.095 4.095 11 C -0.261 4.261 12 C -0.112 4.112 13 C -0.228 4.228 14 C 0.086 3.914 15 C -0.555 4.555 16 H 0.092 0.908 17 C -0.181 4.181 18 N -0.418 5.418 19 Si 0.887 3.113 20 H -0.199 1.199 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.113 4.113 24 C -0.205 4.205 25 C -0.209 4.209 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.236 0.764 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.326 1.034 13.393 13.498 hybrid contribution 0.960 -0.078 0.909 1.324 sum -0.367 0.956 14.302 14.339 Atomic orbital electron populations 1.21886 0.96654 1.01177 1.01482 1.21708 0.95384 0.96329 1.03089 1.20903 1.00623 0.94683 0.91853 0.90631 1.21894 1.02483 1.01096 0.92788 1.20640 0.81790 0.83819 0.85205 1.90587 1.36182 1.27834 1.87117 1.42923 1.53045 1.27901 1.04342 1.17631 0.94694 1.08937 0.87246 1.20731 0.94211 0.97698 0.96847 1.20266 1.00761 1.11037 0.94001 1.20391 0.95142 0.99050 0.96645 1.20740 0.97742 1.05455 0.98894 1.17489 0.91505 0.91642 0.90779 1.20308 1.03022 1.34674 0.97490 0.90842 1.26950 1.07968 0.91727 0.91452 1.70462 1.10169 1.28857 1.32358 0.83660 0.72568 0.77809 0.77291 1.19856 1.20058 1.20186 1.21198 1.00504 0.94843 0.94776 1.21875 1.00907 1.00421 0.97257 1.21936 1.01321 0.96159 1.01467 0.92670 0.93247 0.92932 0.89691 0.92310 0.89321 0.88808 0.76396 0.87001 0.89109 0.89268 0.87452 0.88628 0.90994 0.92790 0.93118 0.92269 0.92332 0.92993 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.12 37.15 0.34 -1.54 16 2 C -0.13 -1.70 5.19 -26.73 -0.14 -1.84 16 3 C -0.06 -0.77 1.39 -90.62 -0.13 -0.90 16 4 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 5 C -0.14 -1.92 4.70 -27.88 -0.13 -2.05 16 6 C 0.50 9.22 7.46 -10.98 -0.08 9.14 16 7 O -0.54 -11.54 11.33 5.56 0.06 -11.48 16 8 N -0.64 -12.99 4.91 -9.47 -0.05 -13.04 16 9 C 0.01 0.21 6.35 -83.17 -0.53 -0.32 16 10 C -0.07 -1.80 8.70 -39.44 -0.34 -2.15 16 11 C -0.24 -5.63 10.04 -39.36 -0.39 -6.03 16 12 C -0.09 -2.21 9.97 -39.99 -0.40 -2.61 16 13 C -0.21 -5.31 7.89 -39.28 -0.31 -5.62 16 14 C 0.09 2.31 5.32 -106.65 -0.57 1.75 16 15 C -0.53 -13.15 8.34 -37.86 -0.32 -13.47 16 16 H 0.07 1.75 7.38 -52.48 -0.39 1.36 16 17 C 0.04 1.00 4.94 -17.32 -0.09 0.92 16 18 N -0.80 -20.39 12.31 55.55 0.68 -19.70 16 19 Si 1.06 20.75 30.00 -169.99 -5.10 15.65 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 23 C -0.09 -0.94 2.26 -90.62 -0.21 -1.15 16 24 C -0.15 -1.35 8.85 37.16 0.33 -1.02 16 25 C -0.15 -1.40 8.85 37.16 0.33 -1.07 16 26 H 0.05 0.74 6.52 -51.93 -0.34 0.40 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.55 6.33 -51.92 -0.33 0.22 16 29 H 0.08 1.42 6.08 -51.93 -0.32 1.11 16 30 H 0.06 0.70 6.18 -51.93 -0.32 0.38 16 31 H 0.09 1.03 6.10 -51.93 -0.32 0.71 16 32 H 0.09 1.17 6.10 -51.93 -0.32 0.86 16 33 H 0.40 7.37 7.93 -40.82 -0.32 7.05 16 34 H 0.11 2.67 6.13 -52.48 -0.32 2.35 16 35 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.11 2.80 6.48 -52.48 -0.34 2.46 16 38 H 0.30 7.92 6.67 -40.82 -0.27 7.65 16 39 H 0.07 0.70 6.45 -51.93 -0.34 0.36 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.54 6.32 -51.93 -0.33 0.21 16 43 H 0.06 0.53 6.29 -51.93 -0.33 0.21 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -28.02 344.98 -8.57 -36.59 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -6.74 Total: 14.73 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: -2.63 Total: -27.95 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.64 Total: -32.74 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.06 Total: -11.48 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.10 Total: 15.65 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.02 -8.57 -36.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583405010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.615 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds