Wall clock time and date at job start Tue Mar 31 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46916 * 2 1 4 4 H 1.08999 * 109.47131 * 184.86257 * 3 2 1 5 5 C 1.53006 * 109.47220 * 304.86118 * 3 2 1 6 6 C 1.50700 * 109.46602 * 293.47728 * 5 3 2 7 7 O 1.21279 * 120.00520 * 2.99558 * 6 5 3 8 8 N 1.34782 * 119.99812 * 182.99061 * 6 5 3 9 9 C 1.39124 * 120.00104 * 185.05287 * 8 6 5 10 10 C 1.38647 * 120.28863 * 325.95506 * 9 8 6 11 11 C 1.38218 * 120.03496 * 180.25558 * 10 9 8 12 12 C 1.38865 * 120.61715 * 359.73194 * 11 10 9 13 13 C 1.36464 * 120.57519 * 0.02562 * 12 11 10 14 14 C 1.40731 * 119.94437 * 359.97438 * 13 12 11 15 15 C 1.41074 * 120.30041 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99932 * 154.66163 * 15 14 13 17 17 C 1.39961 * 120.00141 * 334.65395 * 15 14 13 18 18 N 1.30856 * 119.99682 * 334.63323 * 17 15 14 19 19 Si 1.86792 * 120.00098 * 154.63763 * 17 15 14 20 20 H 1.48491 * 109.47438 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47184 * 300.00236 * 19 17 15 22 22 H 1.48507 * 109.47120 * 60.00009 * 19 17 15 23 23 C 1.52998 * 109.47474 * 64.86178 * 3 2 1 24 24 C 1.52999 * 109.47457 * 59.99443 * 23 3 2 25 25 C 1.53001 * 109.47474 * 180.02562 * 23 3 2 26 26 H 1.09003 * 109.47845 * 65.24207 * 1 2 3 27 27 H 1.08996 * 109.47300 * 185.24440 * 1 2 3 28 28 H 1.09008 * 109.47568 * 305.24446 * 1 2 3 29 29 H 1.08997 * 109.46952 * 240.00272 * 2 1 3 30 30 H 1.09001 * 109.47195 * 119.99646 * 2 1 3 31 31 H 1.09001 * 109.46885 * 173.48396 * 5 3 2 32 32 H 1.08994 * 109.47410 * 53.47578 * 5 3 2 33 33 H 0.97003 * 119.99865 * 5.06275 * 8 6 5 34 34 H 1.08003 * 119.97990 * 359.96682 * 10 9 8 35 35 H 1.08002 * 119.69428 * 179.76242 * 11 10 9 36 36 H 1.08001 * 119.71391 * 180.02562 * 12 11 10 37 37 H 1.08004 * 120.02832 * 180.02562 * 13 12 11 38 38 H 0.96999 * 119.99766 * 354.23228 * 18 17 15 39 39 H 1.09003 * 109.46857 * 299.99690 * 23 3 2 40 40 H 1.08999 * 109.46430 * 60.00360 * 24 23 3 41 41 H 1.08992 * 109.47462 * 180.02562 * 24 23 3 42 42 H 1.08999 * 109.46929 * 300.00844 * 24 23 3 43 43 H 1.09001 * 109.46827 * 59.99664 * 25 23 3 44 44 H 1.09002 * 109.47241 * 179.97438 * 25 23 3 45 45 H 1.08999 * 109.47131 * 300.00079 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1264 1.4438 -0.0871 5 6 1.4325 2.1982 -1.1837 6 6 1.9618 1.6226 -2.4719 7 8 2.7048 0.6644 -2.4480 8 7 1.6093 2.1727 -3.6508 9 6 2.0116 1.5795 -4.8432 10 6 3.2384 0.9389 -4.9265 11 6 3.6351 0.3559 -6.1153 12 6 2.8126 0.3992 -7.2333 13 6 1.5980 1.0188 -7.1780 14 6 1.1702 1.6203 -5.9797 15 6 -0.0837 2.2633 -5.9143 16 1 -0.5930 2.3584 -4.9666 17 6 -0.6678 2.7782 -7.0773 18 7 0.0855 3.1224 -8.0905 19 14 -2.5223 2.9742 -7.1833 20 1 -2.8859 3.5355 -8.5091 21 1 -3.1707 1.6492 -7.0125 22 1 -2.9849 3.8933 -6.1124 23 6 1.6322 2.1277 1.3058 24 6 2.2394 1.3720 2.4895 25 6 2.1416 3.5704 1.3056 26 1 -0.3635 0.4304 -0.9332 27 1 -0.3634 -1.0233 0.0939 28 1 -0.3634 0.5931 0.8393 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7023 3.2523 -1.1188 32 1 0.3474 2.0987 -1.1600 33 1 1.0752 2.9823 -3.6679 34 1 3.8863 0.8994 -4.0633 35 1 4.5935 -0.1384 -6.1751 36 1 3.1370 -0.0615 -8.1547 37 1 0.9653 1.0469 -8.0528 38 1 1.0516 3.0999 -8.0062 39 1 0.5456 2.1265 1.3929 40 1 3.3259 1.3733 2.4024 41 1 1.9486 1.8599 3.4198 42 1 1.8761 0.3444 2.4895 43 1 1.7085 4.1084 0.4623 44 1 1.8507 4.0586 2.2357 45 1 3.2281 3.5721 1.2182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583405010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:33 Heat of formation + Delta-G solvation = -64.462225 kcal Electronic energy + Delta-G solvation = -23455.475058 eV Core-core repulsion = 20242.668379 eV Total energy + Delta-G solvation = -3212.806679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.43072 -39.65547 -38.32163 -35.78114 -35.45858 -33.38079 -31.53916 -31.21490 -29.82828 -27.82714 -27.04446 -26.01442 -23.53624 -23.11127 -22.54103 -21.00525 -19.89708 -19.64284 -18.21548 -17.76120 -16.88478 -16.54620 -16.09400 -16.03112 -15.61374 -15.37427 -15.01281 -14.68835 -14.50330 -14.17851 -13.91248 -13.82087 -13.69875 -13.30526 -13.24668 -13.01365 -12.74843 -12.65470 -12.48241 -12.36618 -12.23175 -12.07113 -11.95849 -11.67992 -11.48077 -11.38566 -11.13425 -11.10693 -11.04161 -10.79348 -10.33527 -9.54607 -9.29074 -8.78974 -6.40413 0.78419 0.91903 1.53483 1.65612 1.81339 1.83291 2.34111 2.47252 2.70333 3.54706 3.75204 3.81917 3.92421 4.15009 4.23207 4.39457 4.41388 4.44283 4.52107 4.58619 4.61462 4.67387 4.72561 4.84190 4.85937 4.95859 5.01810 5.07628 5.08884 5.10766 5.17320 5.24265 5.31552 5.33038 5.38324 5.49223 5.52086 5.59611 5.68529 5.69748 5.78559 5.94767 6.04770 6.14059 6.36225 6.66365 6.90838 6.92837 7.44296 8.05967 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016593 B = 0.004503 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.020115 B = 6216.396712 C = 7194.701637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.057 4.057 4 H 0.056 0.944 5 C -0.132 4.132 6 C 0.495 3.505 7 O -0.569 6.569 8 N -0.643 5.643 9 C 0.006 3.994 10 C -0.091 4.091 11 C -0.242 4.242 12 C -0.099 4.099 13 C -0.228 4.228 14 C 0.063 3.937 15 C -0.544 4.544 16 H 0.081 0.919 17 C 0.008 3.992 18 N -0.815 5.815 19 Si 1.114 2.886 20 H -0.276 1.276 21 H -0.270 1.270 22 H -0.251 1.251 23 C -0.088 4.088 24 C -0.147 4.147 25 C -0.152 4.152 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.410 0.590 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.285 0.715 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 1.995 16.471 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.076 4.076 4 H 0.074 0.926 5 C -0.172 4.172 6 C 0.285 3.715 7 O -0.449 6.449 8 N -0.286 5.286 9 C -0.089 4.089 10 C -0.112 4.112 11 C -0.262 4.262 12 C -0.117 4.117 13 C -0.248 4.248 14 C 0.059 3.941 15 C -0.572 4.572 16 H 0.099 0.901 17 C -0.209 4.209 18 N -0.438 5.438 19 Si 0.931 3.069 20 H -0.200 1.200 21 H -0.195 1.195 22 H -0.175 1.175 23 C -0.106 4.106 24 C -0.204 4.204 25 C -0.210 4.210 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.246 0.754 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.604 1.810 15.482 15.803 hybrid contribution 1.484 -0.387 0.322 1.567 sum -1.120 1.423 15.803 15.907 Atomic orbital electron populations 1.21857 0.95496 1.01760 1.01686 1.21646 0.96356 0.96669 1.01707 1.20876 0.99334 0.94422 0.93016 0.92588 1.21954 1.03185 1.02164 0.89859 1.21584 0.80758 0.83155 0.86032 1.90577 1.37489 1.29201 1.87603 1.43010 1.53437 1.28299 1.03845 1.17830 0.94421 1.08295 0.88352 1.20901 0.94501 0.98506 0.97250 1.20593 1.01601 1.10395 0.93568 1.20642 0.94547 0.98724 0.97831 1.20777 0.98621 1.06708 0.98708 1.17820 0.92382 0.92457 0.91468 1.20507 1.03192 1.35187 0.98290 0.90134 1.28325 1.11547 0.90352 0.90688 1.70573 1.09342 1.30796 1.33132 0.83035 0.67510 0.78428 0.77908 1.20034 1.19535 1.17483 1.21152 1.01168 0.95083 0.93192 1.21875 1.00547 1.00443 0.97575 1.21948 1.00975 0.95624 1.02411 0.94115 0.93047 0.90470 0.93747 0.91022 0.86884 0.87149 0.75404 0.87079 0.86718 0.86786 0.88805 0.90303 0.89874 0.93348 0.91531 0.92370 0.92110 0.91472 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.12 71.98 0.66 -2.74 16 2 C -0.13 -3.26 5.19 30.59 0.16 -3.10 16 3 C -0.06 -1.36 1.39 -10.79 -0.02 -1.37 16 4 H 0.06 1.55 7.95 -2.39 -0.02 1.53 16 5 C -0.13 -3.33 4.70 29.85 0.14 -3.19 16 6 C 0.49 18.25 7.46 87.66 0.65 18.91 16 7 O -0.57 -24.81 11.33 -3.03 -0.03 -24.85 16 8 N -0.64 -26.12 4.91 -302.27 -1.48 -27.60 16 9 C 0.01 0.28 6.35 38.88 0.25 0.53 16 10 C -0.09 -4.46 8.70 22.36 0.19 -4.27 16 11 C -0.24 -11.31 10.04 22.42 0.22 -11.08 16 12 C -0.10 -4.69 9.97 22.01 0.22 -4.47 16 13 C -0.23 -11.91 7.89 22.46 0.18 -11.73 16 14 C 0.06 3.30 5.32 -21.18 -0.11 3.18 16 15 C -0.54 -27.35 8.34 23.38 0.20 -27.15 16 16 H 0.08 3.82 7.38 -2.91 -0.02 3.79 16 17 C 0.01 0.38 4.94 85.26 0.42 0.80 16 18 N -0.82 -42.55 12.31 21.83 0.27 -42.28 16 19 Si 1.11 40.95 30.00 68.60 2.06 43.01 16 20 H -0.28 -10.15 7.11 99.48 0.71 -9.44 16 21 H -0.27 -9.67 7.11 99.48 0.71 -8.97 16 22 H -0.25 -8.17 7.11 99.48 0.71 -7.46 16 23 C -0.09 -1.49 2.26 -10.79 -0.02 -1.52 16 24 C -0.15 -2.31 8.85 71.98 0.64 -1.67 16 25 C -0.15 -2.36 8.85 71.98 0.64 -1.72 16 26 H 0.04 1.02 6.52 -2.39 -0.02 1.01 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.35 6.33 -2.38 -0.02 1.34 16 29 H 0.04 1.52 6.08 -2.39 -0.01 1.50 16 30 H 0.07 1.63 6.18 -2.39 -0.01 1.62 16 31 H 0.11 2.34 6.10 -2.39 -0.01 2.33 16 32 H 0.11 2.49 6.10 -2.39 -0.01 2.48 16 33 H 0.41 14.90 7.93 -92.71 -0.74 14.16 16 34 H 0.11 5.39 6.13 -2.91 -0.02 5.38 16 35 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 36 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.09 5.06 6.48 -2.91 -0.02 5.04 16 38 H 0.28 15.56 6.67 -92.71 -0.62 14.94 16 39 H 0.08 1.27 6.45 -2.39 -0.02 1.26 16 40 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 0.92 6.32 -2.39 -0.02 0.91 16 43 H 0.06 0.91 6.29 -2.39 -0.02 0.89 16 44 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -61.92 344.98 5.63 -56.29 By element: Atomic # 1 Polarization: 45.63 SS G_CDS: 0.41 Total: 46.04 kcal Atomic # 6 Polarization: -55.02 SS G_CDS: 4.41 Total: -50.61 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -1.22 Total: -69.89 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.03 Total: -24.85 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.06 Total: 43.01 kcal Total: -61.92 5.63 -56.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583405010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.177 kcal (2) G-P(sol) polarization free energy of solvation -61.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds