Wall clock time and date at job start Tue Mar 31 2020 06:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47116 * 2 1 4 4 N 1.46492 * 109.47445 * 120.00519 * 2 1 3 5 5 C 1.34777 * 120.00590 * 125.58209 * 4 2 1 6 6 O 1.21284 * 120.00345 * 185.03652 * 5 4 2 7 7 C 1.50705 * 119.99708 * 5.02831 * 5 4 2 8 8 C 1.52994 * 109.47155 * 174.95752 * 7 5 4 9 9 C 1.53002 * 109.47080 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46797 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46924 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99915 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00277 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99818 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00294 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46819 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47100 * 119.99670 * 15 13 11 18 18 H 1.48498 * 109.46939 * 239.99991 * 15 13 11 19 19 C 1.39927 * 119.99727 * 305.58331 * 4 2 1 20 20 C 1.38878 * 120.07086 * 172.40536 * 19 4 2 21 21 C 1.38113 * 119.92884 * 179.97438 * 20 19 4 22 22 C 1.38273 * 120.07073 * 0.02562 * 21 20 19 23 23 C 1.38287 * 120.14332 * 359.96246 * 22 21 20 24 24 C 1.38108 * 120.06870 * 0.03644 * 23 22 21 25 25 H 1.09000 * 109.46805 * 305.06674 * 1 2 3 26 26 H 1.08994 * 109.47338 * 65.06879 * 1 2 3 27 27 H 1.09004 * 109.46577 * 185.07231 * 1 2 3 28 28 H 1.09008 * 109.46862 * 240.00083 * 2 1 3 29 29 H 1.08997 * 109.47312 * 186.03170 * 3 2 1 30 30 H 1.08997 * 109.47297 * 306.03069 * 3 2 1 31 31 H 1.09002 * 109.46834 * 66.03113 * 3 2 1 32 32 H 1.09003 * 109.47253 * 294.96028 * 7 5 4 33 33 H 1.09002 * 109.46716 * 54.95648 * 7 5 4 34 34 H 1.09003 * 109.47266 * 300.00268 * 8 7 5 35 35 H 1.09002 * 109.47393 * 60.00311 * 8 7 5 36 36 H 1.08998 * 109.46788 * 299.99618 * 9 8 7 37 37 H 1.08996 * 109.46916 * 60.00120 * 9 8 7 38 38 H 1.08998 * 109.47117 * 299.99389 * 10 9 8 39 39 H 1.08996 * 109.47312 * 60.00334 * 10 9 8 40 40 H 0.96998 * 119.99933 * 180.02562 * 14 13 11 41 41 H 1.08004 * 120.03101 * 359.69300 * 20 19 4 42 42 H 1.07997 * 119.96247 * 179.97438 * 21 20 19 43 43 H 1.08001 * 119.92859 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.96504 * 180.02562 * 23 22 21 45 45 H 1.08001 * 120.03311 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0185 -0.6907 1.1960 5 6 2.8834 -1.7172 1.0756 6 8 3.2170 -2.3475 2.0566 7 6 3.4360 -2.0820 -0.2783 8 6 4.4806 -3.1887 -0.1214 9 6 5.0421 -3.5586 -1.4958 10 6 6.0863 -4.6658 -1.3389 11 6 6.6398 -5.0297 -2.6926 12 1 6.2822 -4.5223 -3.5764 13 6 7.6019 -6.0111 -2.8029 14 7 8.0370 -6.6293 -1.7268 15 14 8.2885 -6.4616 -4.4807 16 1 7.6389 -5.6256 -5.5221 17 1 9.7540 -6.2225 -4.4963 18 1 8.0178 -7.8952 -4.7576 19 6 1.5869 -0.2846 2.4636 20 6 1.9212 -1.0323 3.5851 21 6 1.4941 -0.6285 4.8350 22 6 0.7340 0.5186 4.9702 23 6 0.3996 1.2655 3.8555 24 6 0.8236 0.8671 2.6029 25 1 -0.3633 0.5904 0.8411 26 1 -0.3634 0.4332 -0.9318 27 1 -0.3632 -1.0237 0.0909 28 1 1.8934 -0.5139 -0.8901 29 1 3.1247 1.4444 -0.1080 30 1 1.5913 1.9866 -0.8310 31 1 1.7676 1.9242 0.9391 32 1 2.6269 -2.4341 -0.9182 33 1 3.9006 -1.2051 -0.7293 34 1 5.2898 -2.8366 0.5185 35 1 4.0161 -4.0656 0.3296 36 1 4.2332 -3.9106 -2.1359 37 1 5.5068 -2.6816 -1.9464 38 1 6.8953 -4.3142 -0.6986 39 1 5.6213 -5.5427 -0.8885 40 1 8.7141 -7.3195 -1.8043 41 1 2.5107 -1.9311 3.4795 42 1 1.7534 -1.2098 5.7074 43 1 0.4009 0.8320 5.9486 44 1 -0.1939 2.1613 3.9645 45 1 0.5618 1.4507 1.7327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588887637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:26 Heat of formation + Delta-G solvation = -5.096332 kcal Electronic energy + Delta-G solvation = -22684.876927 eV Core-core repulsion = 19474.644546 eV Total energy + Delta-G solvation = -3210.232381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26851 -38.57325 -36.99479 -35.03960 -32.77459 -32.50254 -30.84961 -30.53112 -29.04957 -27.60467 -25.76407 -23.40502 -22.79394 -22.38109 -21.59837 -20.05519 -19.44640 -17.32054 -16.88126 -16.56697 -16.16185 -16.06102 -15.02890 -14.58814 -14.50437 -14.39390 -14.19898 -13.60341 -13.46423 -13.35075 -13.23818 -12.83668 -12.52655 -12.41730 -12.23202 -11.85809 -11.76682 -11.72598 -11.65100 -11.55797 -11.01902 -10.60411 -10.57225 -10.48371 -10.40496 -10.35813 -9.64054 -9.40769 -9.16493 -8.98701 -8.96881 -8.31729 -8.00572 -5.96270 -3.98823 1.20274 1.35578 2.54726 2.60200 3.32481 3.39736 3.43468 3.77517 4.27875 4.36238 4.48546 4.66368 4.74499 4.85394 4.87002 5.07491 5.12961 5.19040 5.21789 5.26258 5.32727 5.38347 5.39255 5.47249 5.51821 5.56821 5.74202 5.84233 5.87345 5.98705 6.07901 6.16420 6.24759 6.32208 6.46817 6.50366 6.56180 6.79563 6.96711 7.08526 7.16101 7.22400 7.73043 7.88322 8.03825 8.05342 8.46582 9.09065 9.65015 11.15107 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029009 B = 0.002782 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.969478 B =10061.178141 C =10807.219961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C -0.182 4.182 4 N -0.553 5.553 5 C 0.514 3.486 6 O -0.507 6.507 7 C -0.138 4.138 8 C -0.105 4.105 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.161 3.839 20 C -0.171 4.171 21 C -0.098 4.098 22 C -0.153 4.153 23 C -0.103 4.103 24 C -0.178 4.178 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.183 0.817 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.160 18.673 7.575 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.019 3.981 3 C -0.239 4.239 4 N -0.276 5.276 5 C 0.306 3.694 6 O -0.383 6.383 7 C -0.177 4.177 8 C -0.143 4.143 9 C -0.147 4.147 10 C -0.018 4.018 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.534 5.534 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.067 3.933 20 C -0.191 4.191 21 C -0.117 4.117 22 C -0.172 4.172 23 C -0.121 4.121 24 C -0.198 4.198 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.199 0.801 42 H 0.140 0.860 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.816 18.157 8.046 26.680 hybrid contribution 0.343 -0.149 -0.895 0.970 sum -17.473 18.008 7.150 26.091 Atomic orbital electron populations 1.22464 0.94134 1.03550 1.03488 1.21409 0.95243 0.94056 0.87407 1.22488 1.02428 0.95407 1.03594 1.45881 1.43629 1.32689 1.05390 1.21376 0.77194 0.78270 0.92595 1.90346 1.58299 1.50733 1.38929 1.21889 1.00964 1.02062 0.92802 1.21494 0.96619 0.96418 0.99721 1.21644 0.99324 1.00115 0.93643 1.19099 0.93035 0.92694 0.96924 1.21312 1.21519 1.19525 0.93442 0.92708 1.25044 0.96731 0.96339 0.96485 1.69986 1.30241 1.25312 1.27908 0.86558 0.78822 0.78234 0.84509 1.19782 1.21040 1.21044 1.18015 0.96366 0.94359 0.84595 1.22838 1.02207 1.03300 0.90717 1.21192 0.96871 0.96260 0.97366 1.21110 1.00994 0.96603 0.98475 1.20895 0.99665 0.99451 0.92128 1.21340 1.02593 0.97223 0.98658 0.90584 0.90811 0.91783 0.87645 0.91683 0.90788 0.90651 0.88653 0.88872 0.91744 0.91500 0.93419 0.93438 0.96578 0.96549 0.93086 0.80118 0.86029 0.86548 0.86171 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 8.90 37.16 0.33 -0.92 16 2 C 0.12 1.00 3.01 -67.93 -0.20 0.80 16 3 C -0.18 -1.28 9.05 37.16 0.34 -0.94 16 4 N -0.55 -6.47 2.62 -106.38 -0.28 -6.75 16 5 C 0.51 7.29 7.61 -10.98 -0.08 7.20 16 6 O -0.51 -8.80 12.39 5.55 0.07 -8.73 16 7 C -0.14 -1.79 4.03 -27.88 -0.11 -1.90 16 8 C -0.10 -1.82 4.52 -26.73 -0.12 -1.94 16 9 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 10 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 11 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 15 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C 0.16 2.00 6.07 -83.69 -0.51 1.49 16 20 C -0.17 -2.35 9.04 -39.39 -0.36 -2.71 16 21 C -0.10 -1.13 10.04 -39.61 -0.40 -1.53 16 22 C -0.15 -1.52 10.04 -39.55 -0.40 -1.91 16 23 C -0.10 -0.96 10.04 -39.61 -0.40 -1.35 16 24 C -0.18 -1.78 6.87 -39.40 -0.27 -2.05 16 25 H 0.08 0.53 4.71 -51.93 -0.24 0.29 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.11 0.78 5.87 -51.92 -0.30 0.47 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.55 4.80 -51.93 -0.25 0.30 16 32 H 0.10 1.06 7.71 -51.93 -0.40 0.66 16 33 H 0.09 1.04 7.86 -51.93 -0.41 0.63 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.18 2.87 4.55 -56.12 -0.26 2.62 16 42 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.14 1.10 3.37 -52.49 -0.18 0.92 16 LS Contribution 353.49 15.07 5.33 5.33 Total: -1.00 -32.98 353.49 -9.11 -42.09 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.07 Total: -0.59 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -2.87 Total: -21.43 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.46 Total: -33.47 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.07 Total: -8.73 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.98 -9.11 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588887637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.990 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds