Wall clock time and date at job start Tue Mar 31 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47116 * 2 1 4 4 N 1.46492 * 109.47445 * 120.00519 * 2 1 3 5 5 C 1.34777 * 120.00590 * 125.58209 * 4 2 1 6 6 O 1.21284 * 120.00345 * 185.03652 * 5 4 2 7 7 C 1.50705 * 119.99708 * 5.02831 * 5 4 2 8 8 C 1.52994 * 109.47155 * 174.95752 * 7 5 4 9 9 C 1.53002 * 109.47080 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46797 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46924 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99915 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00277 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99818 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00294 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46819 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47100 * 119.99670 * 15 13 11 18 18 H 1.48498 * 109.46939 * 239.99991 * 15 13 11 19 19 C 1.39927 * 119.99727 * 305.58331 * 4 2 1 20 20 C 1.38878 * 120.07086 * 172.40536 * 19 4 2 21 21 C 1.38113 * 119.92884 * 179.97438 * 20 19 4 22 22 C 1.38273 * 120.07073 * 0.02562 * 21 20 19 23 23 C 1.38287 * 120.14332 * 359.96246 * 22 21 20 24 24 C 1.38108 * 120.06870 * 0.03644 * 23 22 21 25 25 H 1.09000 * 109.46805 * 305.06674 * 1 2 3 26 26 H 1.08994 * 109.47338 * 65.06879 * 1 2 3 27 27 H 1.09004 * 109.46577 * 185.07231 * 1 2 3 28 28 H 1.09008 * 109.46862 * 240.00083 * 2 1 3 29 29 H 1.08997 * 109.47312 * 186.03170 * 3 2 1 30 30 H 1.08997 * 109.47297 * 306.03069 * 3 2 1 31 31 H 1.09002 * 109.46834 * 66.03113 * 3 2 1 32 32 H 1.09003 * 109.47253 * 294.96028 * 7 5 4 33 33 H 1.09002 * 109.46716 * 54.95648 * 7 5 4 34 34 H 1.09003 * 109.47266 * 300.00268 * 8 7 5 35 35 H 1.09002 * 109.47393 * 60.00311 * 8 7 5 36 36 H 1.08998 * 109.46788 * 299.99618 * 9 8 7 37 37 H 1.08996 * 109.46916 * 60.00120 * 9 8 7 38 38 H 1.08998 * 109.47117 * 299.99389 * 10 9 8 39 39 H 1.08996 * 109.47312 * 60.00334 * 10 9 8 40 40 H 0.96998 * 119.99933 * 180.02562 * 14 13 11 41 41 H 1.08004 * 120.03101 * 359.69300 * 20 19 4 42 42 H 1.07997 * 119.96247 * 179.97438 * 21 20 19 43 43 H 1.08001 * 119.92859 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.96504 * 180.02562 * 23 22 21 45 45 H 1.08001 * 120.03311 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0185 -0.6907 1.1960 5 6 2.8834 -1.7172 1.0756 6 8 3.2170 -2.3475 2.0566 7 6 3.4360 -2.0820 -0.2783 8 6 4.4806 -3.1887 -0.1214 9 6 5.0421 -3.5586 -1.4958 10 6 6.0863 -4.6658 -1.3389 11 6 6.6398 -5.0297 -2.6926 12 1 6.2822 -4.5223 -3.5764 13 6 7.6019 -6.0111 -2.8029 14 7 8.0370 -6.6293 -1.7268 15 14 8.2885 -6.4616 -4.4807 16 1 7.6389 -5.6256 -5.5221 17 1 9.7540 -6.2225 -4.4963 18 1 8.0178 -7.8952 -4.7576 19 6 1.5869 -0.2846 2.4636 20 6 1.9212 -1.0323 3.5851 21 6 1.4941 -0.6285 4.8350 22 6 0.7340 0.5186 4.9702 23 6 0.3996 1.2655 3.8555 24 6 0.8236 0.8671 2.6029 25 1 -0.3633 0.5904 0.8411 26 1 -0.3634 0.4332 -0.9318 27 1 -0.3632 -1.0237 0.0909 28 1 1.8934 -0.5139 -0.8901 29 1 3.1247 1.4444 -0.1080 30 1 1.5913 1.9866 -0.8310 31 1 1.7676 1.9242 0.9391 32 1 2.6269 -2.4341 -0.9182 33 1 3.9006 -1.2051 -0.7293 34 1 5.2898 -2.8366 0.5185 35 1 4.0161 -4.0656 0.3296 36 1 4.2332 -3.9106 -2.1359 37 1 5.5068 -2.6816 -1.9464 38 1 6.8953 -4.3142 -0.6986 39 1 5.6213 -5.5427 -0.8885 40 1 8.7141 -7.3195 -1.8043 41 1 2.5107 -1.9311 3.4795 42 1 1.7534 -1.2098 5.7074 43 1 0.4009 0.8320 5.9486 44 1 -0.1939 2.1613 3.9645 45 1 0.5618 1.4507 1.7327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588887637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:25 Heat of formation + Delta-G solvation = -22.881497 kcal Electronic energy + Delta-G solvation = -22685.648149 eV Core-core repulsion = 19474.644546 eV Total energy + Delta-G solvation = -3211.003604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.18745 -39.53056 -37.81289 -36.71233 -34.68064 -33.34113 -32.05547 -31.54430 -30.32101 -28.12080 -27.48832 -24.80422 -23.71878 -23.28625 -22.70999 -21.73795 -20.40015 -18.49256 -18.20683 -17.69178 -17.33842 -17.16360 -16.52274 -15.89145 -15.82440 -15.33774 -15.07509 -14.60416 -14.44798 -14.40626 -14.12229 -14.03651 -13.67285 -13.65078 -13.44707 -13.11399 -12.93387 -12.86269 -12.55411 -12.46859 -12.34569 -12.29119 -12.19575 -12.15777 -11.40517 -11.33703 -11.19234 -11.16813 -11.07446 -10.56090 -10.29477 -9.81189 -8.87500 -8.19129 -6.31197 0.33830 0.50767 1.40376 1.41261 1.53955 1.54693 1.73420 2.41638 2.93629 3.13873 3.35164 3.72648 3.92564 4.03362 4.05757 4.11209 4.14047 4.23173 4.33461 4.46553 4.52318 4.58310 4.61633 4.64279 4.72762 4.75520 4.85394 4.86930 4.90302 5.00177 5.14842 5.17078 5.28690 5.31708 5.33193 5.35490 5.37704 5.52163 5.55860 5.66573 5.70354 5.77234 5.87702 6.20119 6.24809 6.32182 6.87630 7.02196 7.38600 8.93407 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029009 B = 0.002782 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.969478 B =10061.178141 C =10807.219961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.111 3.889 3 C -0.178 4.178 4 N -0.547 5.547 5 C 0.506 3.494 6 O -0.553 6.553 7 C -0.125 4.125 8 C -0.096 4.096 9 C -0.094 4.094 10 C 0.018 3.982 11 C -0.539 4.539 12 H 0.067 0.933 13 C -0.008 4.008 14 N -0.939 5.939 15 Si 0.969 3.031 16 H -0.256 1.256 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.141 3.859 20 C -0.206 4.206 21 C -0.112 4.112 22 C -0.153 4.153 23 C -0.100 4.100 24 C -0.172 4.172 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.048 0.952 28 H 0.118 0.882 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.062 0.938 38 H -0.016 1.016 39 H -0.016 1.016 40 H 0.263 0.737 41 H 0.152 0.848 42 H 0.127 0.873 43 H 0.142 0.858 44 H 0.155 0.845 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.091 21.526 5.448 29.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 C -0.235 4.235 4 N -0.269 5.269 5 C 0.298 3.702 6 O -0.432 6.432 7 C -0.165 4.165 8 C -0.134 4.134 9 C -0.132 4.132 10 C -0.019 4.019 11 C -0.577 4.577 12 H 0.085 0.915 13 C -0.205 4.205 14 N -0.579 5.579 15 Si 0.793 3.207 16 H -0.180 1.180 17 H -0.205 1.205 18 H -0.205 1.205 19 C 0.046 3.954 20 C -0.226 4.226 21 C -0.131 4.131 22 C -0.171 4.171 23 C -0.119 4.119 24 C -0.191 4.191 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.067 0.933 28 H 0.135 0.865 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.071 0.929 41 H 0.169 0.831 42 H 0.145 0.855 43 H 0.160 0.840 44 H 0.173 0.827 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -19.783 21.052 5.904 29.486 hybrid contribution 0.906 -1.006 -0.141 1.362 sum -18.876 20.046 5.762 28.131 Atomic orbital electron populations 1.22448 0.92914 1.02901 1.04915 1.21793 0.96257 0.94733 0.86249 1.22475 1.01997 0.94520 1.04531 1.45949 1.42600 1.31894 1.06427 1.21573 0.77586 0.78696 0.92360 1.90375 1.60072 1.52512 1.40245 1.21764 1.00450 1.01314 0.92927 1.21265 0.97220 0.97376 0.97536 1.21432 0.97986 0.98338 0.95412 1.19058 0.93659 0.93613 0.95543 1.21781 1.21749 1.19759 0.94451 0.91493 1.26097 0.97131 0.96228 1.01014 1.70141 1.30998 1.26038 1.30747 0.85336 0.78025 0.78114 0.79182 1.17991 1.20508 1.20526 1.18217 0.97412 0.95351 0.84405 1.22706 1.03756 1.03463 0.92628 1.21351 0.97524 0.97406 0.96810 1.21447 0.99892 0.95623 1.00166 1.21368 0.98942 1.00124 0.91433 1.21660 1.01212 0.96141 1.00091 0.90517 0.88160 0.93254 0.86463 0.92621 0.88082 0.90965 0.85967 0.86172 0.93770 0.93600 0.91933 0.91920 0.99731 0.99723 0.92874 0.83094 0.85484 0.83990 0.82694 0.81631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 8.90 71.98 0.64 -1.28 16 2 C 0.11 1.54 3.01 45.00 0.14 1.68 16 3 C -0.18 -1.92 9.05 71.98 0.65 -1.27 16 4 N -0.55 -12.50 2.62 -608.87 -1.60 -14.09 16 5 C 0.51 14.70 7.61 87.66 0.67 15.36 16 6 O -0.55 -20.79 12.39 -3.04 -0.04 -20.83 16 7 C -0.13 -3.15 4.03 29.85 0.12 -3.03 16 8 C -0.10 -3.45 4.52 30.59 0.14 -3.31 16 9 C -0.09 -3.80 5.15 30.60 0.16 -3.64 16 10 C 0.02 1.01 4.97 29.85 0.15 1.16 16 11 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 12 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 13 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 14 N -0.94 -59.25 13.29 21.45 0.28 -58.96 16 15 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 16 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 C 0.14 3.47 6.07 38.15 0.23 3.70 16 20 C -0.21 -6.01 9.04 22.39 0.20 -5.81 16 21 C -0.11 -2.66 10.04 22.25 0.22 -2.44 16 22 C -0.15 -2.76 10.04 22.29 0.22 -2.54 16 23 C -0.10 -1.57 10.04 22.25 0.22 -1.35 16 24 C -0.17 -3.04 6.87 22.39 0.15 -2.89 16 25 H 0.08 0.82 4.71 -2.39 -0.01 0.81 16 26 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.12 1.34 5.87 -2.38 -0.01 1.33 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.83 4.80 -2.39 -0.01 0.82 16 32 H 0.12 2.43 7.71 -2.39 -0.02 2.41 16 33 H 0.12 2.39 7.86 -2.39 -0.02 2.37 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.81 8.05 -2.39 -0.02 1.79 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.15 5.38 4.55 -60.42 -0.28 5.10 16 42 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 44 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 45 H 0.17 2.01 3.37 -2.91 -0.01 2.00 16 Total: -1.00 -76.20 353.49 6.00 -70.20 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.70 Total: 13.49 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 4.61 Total: -36.61 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -1.31 Total: -73.05 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.04 Total: -20.83 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -76.20 6.00 -70.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588887637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.320 kcal (2) G-P(sol) polarization free energy of solvation -76.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds