Wall clock time and date at job start Tue Mar 31 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47227 * 2 1 4 4 H 1.09002 * 109.47493 * 305.00283 * 3 2 1 5 5 C 1.53000 * 109.47345 * 184.99985 * 3 2 1 6 6 N 1.46901 * 109.46769 * 65.00032 * 5 3 2 7 7 C 1.48534 * 111.00172 * 52.60936 * 6 5 3 8 8 C 1.54933 * 103.22824 * 159.71827 * 7 6 5 9 9 C 1.54594 * 102.92252 * 322.58255 * 8 7 6 10 10 O 1.42899 * 110.39461 * 263.00131 * 9 8 7 11 11 C 1.50703 * 110.30842 * 140.87414 * 9 8 7 12 12 H 1.07995 * 119.99785 * 244.28913 * 11 9 8 13 13 C 1.37877 * 119.99869 * 64.28221 * 11 9 8 14 14 N 1.31513 * 120.00121 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99986 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46876 * 60.00359 * 15 13 11 17 17 H 1.48494 * 109.47144 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47175 * 300.00663 * 15 13 11 19 19 C 1.47912 * 110.99681 * 170.00135 * 6 5 3 20 20 C 1.50703 * 109.46941 * 65.00352 * 3 2 1 21 21 C 1.38229 * 120.00230 * 59.72564 * 20 3 2 22 22 C 1.38233 * 119.99994 * 179.74423 * 21 20 3 23 23 C 1.38237 * 119.99859 * 0.55007 * 22 21 20 24 24 C 1.38228 * 120.00159 * 359.70449 * 23 22 21 25 25 C 1.38233 * 119.99981 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.47339 * 59.99924 * 1 2 3 27 27 H 1.09001 * 109.47528 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47017 * 299.99820 * 1 2 3 29 29 H 1.09002 * 109.47017 * 240.00180 * 2 1 3 30 30 H 1.08997 * 109.46970 * 120.00647 * 2 1 3 31 31 H 1.09002 * 109.47398 * 185.00327 * 5 3 2 32 32 H 1.09001 * 109.47194 * 305.00507 * 5 3 2 33 33 H 1.08997 * 110.66294 * 278.15766 * 7 6 5 34 34 H 1.09001 * 110.66815 * 41.27720 * 7 6 5 35 35 H 1.09002 * 110.72385 * 204.22928 * 8 7 6 36 36 H 1.09000 * 110.87522 * 81.01746 * 8 7 6 37 37 H 0.96705 * 113.99857 * 295.76834 * 10 9 8 38 38 H 0.96996 * 120.00088 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.91505 * 333.51116 * 19 6 5 40 40 H 1.08999 * 109.91449 * 94.60846 * 19 6 5 41 41 H 1.08001 * 119.99926 * 0.02562 * 21 20 3 42 42 H 1.08006 * 119.99992 * 180.27347 * 22 21 20 43 43 H 1.08002 * 119.99907 * 179.72296 * 23 22 21 44 44 H 1.08004 * 120.00232 * 179.97438 * 24 23 22 45 45 H 1.08006 * 120.00050 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 3.9489 0.8963 -1.4334 7 6 3.2388 1.5972 -2.5337 8 6 4.1151 1.2897 -3.7738 9 6 5.5511 1.3391 -3.2033 10 8 6.1385 2.6194 -3.4434 11 6 6.3959 0.2532 -3.8182 12 1 6.7891 -0.5403 -3.2001 13 6 6.6668 0.2728 -5.1700 14 7 6.1883 1.2393 -5.9226 15 14 7.7146 -1.0728 -5.9321 16 1 7.0632 -2.3897 -5.7158 17 1 7.8570 -0.8238 -7.3891 18 1 9.0571 -1.0743 -5.2971 19 6 5.3912 1.0998 -1.6905 20 6 1.6414 2.1161 1.2878 21 6 2.0721 1.6047 2.4976 22 6 1.7108 2.2257 3.6785 23 6 0.9094 3.3517 3.6502 24 6 0.4742 3.8601 2.4407 25 6 0.8401 3.2423 1.2594 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.9355 2.4654 -0.0365 32 1 3.9954 0.8310 0.6659 33 1 2.2347 1.1930 -2.6624 34 1 3.2014 2.6701 -2.3455 35 1 3.9786 2.0517 -4.5412 36 1 3.8918 0.2996 -4.1714 37 1 6.2636 2.8254 -4.3800 38 1 6.3792 1.2533 -6.8735 39 1 5.7480 1.9686 -1.1373 40 1 5.9505 0.2135 -1.3906 41 1 2.6947 0.7225 2.5199 42 1 2.0511 1.8287 4.6235 43 1 0.6234 3.8343 4.5730 44 1 -0.1523 4.7396 2.4185 45 1 0.4998 3.6393 0.3144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592523314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:01 Heat of formation + Delta-G solvation = -35.033680 kcal Electronic energy + Delta-G solvation = -23498.280257 eV Core-core repulsion = 20286.749695 eV Total energy + Delta-G solvation = -3211.530562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.78276 -38.32833 -35.97280 -34.03428 -32.04040 -30.95200 -30.81440 -29.97319 -28.14759 -26.98779 -24.42552 -23.13408 -22.83359 -22.21042 -20.71978 -19.39305 -19.14510 -17.07971 -16.89144 -15.68347 -15.14852 -15.01691 -14.84022 -14.52806 -14.26034 -13.90182 -13.69621 -13.42164 -13.33177 -13.15526 -12.54274 -12.37209 -12.16658 -11.95786 -11.63653 -11.52029 -11.27427 -11.20557 -11.12754 -10.85902 -10.59368 -10.55597 -10.51230 -10.41854 -10.30789 -10.20153 -9.88458 -9.13211 -8.95020 -8.67154 -8.54587 -8.06822 -7.72829 -6.16841 -4.22828 1.34489 1.36978 3.27679 3.31979 3.35436 3.76074 4.34473 4.51202 4.74241 4.90705 4.97739 5.04440 5.11112 5.13775 5.27059 5.35762 5.48836 5.51297 5.59711 5.72829 5.77755 5.82535 5.93729 6.00278 6.04732 6.11554 6.15869 6.18407 6.21746 6.27692 6.37933 6.41710 6.47085 6.49100 6.50680 6.61640 6.73922 6.96613 6.98671 7.10369 7.32988 7.55746 7.69972 7.76099 7.88783 8.19992 8.78476 9.44188 9.56533 10.90773 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029621 B = 0.003534 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.060142 B = 7921.276199 C = 8093.898497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.050 4.050 4 H 0.080 0.920 5 C 0.056 3.944 6 N -0.510 5.510 7 C 0.031 3.969 8 C -0.118 4.118 9 C 0.244 3.756 10 O -0.596 6.596 11 C -0.528 4.528 12 H 0.061 0.939 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.054 3.946 20 C -0.062 4.062 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.120 4.120 25 C -0.118 4.118 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.383 0.617 38 H 0.267 0.733 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.556 2.028 13.881 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.069 4.069 4 H 0.098 0.902 5 C -0.072 4.072 6 N -0.234 5.234 7 C -0.096 4.096 8 C -0.157 4.157 9 C 0.204 3.796 10 O -0.405 6.405 11 C -0.566 4.566 12 H 0.079 0.921 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.728 3.272 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.073 4.073 20 C -0.063 4.063 21 C -0.132 4.132 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.138 4.138 25 C -0.137 4.137 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.688 1.559 14.361 18.582 hybrid contribution 0.729 0.218 -1.030 1.280 sum -10.960 1.778 13.331 17.349 Atomic orbital electron populations 1.21791 0.96515 1.01105 1.01378 1.21506 0.94881 0.95073 1.03160 1.20348 0.95762 0.96670 0.94099 0.90205 1.22299 0.93707 0.97791 0.93437 1.64845 1.05760 1.52226 1.00614 1.23283 0.97916 0.95343 0.93089 1.22970 0.96621 1.01412 0.94687 1.19339 0.89334 0.82325 0.88640 1.86086 1.84823 1.37363 1.32273 1.21678 1.32018 1.09525 0.93400 0.92053 1.25010 0.95314 0.96018 0.97021 1.69610 1.45395 1.32625 1.06479 0.86525 0.80791 0.82053 0.77855 1.20102 1.21255 1.20173 1.22865 0.87279 0.99457 0.97705 1.19942 0.96268 0.94987 0.95059 1.21044 1.00138 1.00125 0.91933 1.21124 0.98454 0.96172 0.98045 1.21085 0.99078 0.97065 0.97741 1.21105 1.00243 0.99839 0.92627 1.21106 0.98545 0.95789 0.98212 0.93018 0.93100 0.93176 0.89862 0.92297 0.95115 0.91167 0.91692 0.95018 0.91881 0.91443 0.76542 0.92330 0.94735 0.90433 0.86029 0.86356 0.86522 0.86392 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.73 37.16 0.36 -1.34 16 2 C -0.11 -1.39 5.24 -26.74 -0.14 -1.53 16 3 C -0.05 -0.67 1.72 -91.77 -0.16 -0.83 16 4 H 0.08 1.12 6.25 -51.93 -0.32 0.79 16 5 C 0.06 0.89 4.16 -3.82 -0.02 0.88 16 6 N -0.51 -9.71 4.77 -230.44 -1.10 -10.81 16 7 C 0.03 0.61 5.09 -1.90 -0.01 0.60 16 8 C -0.12 -2.75 5.50 -24.87 -0.14 -2.88 16 9 C 0.24 6.12 0.99 -90.41 -0.09 6.03 16 10 O -0.60 -15.79 12.93 -35.23 -0.46 -16.25 16 11 C -0.53 -14.30 8.10 -34.44 -0.28 -14.58 16 12 H 0.06 1.66 7.35 -52.49 -0.39 1.27 16 13 C 0.07 1.81 5.26 -17.82 -0.09 1.71 16 14 N -0.90 -24.22 10.88 55.43 0.60 -23.62 16 15 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.05 1.20 6.16 -2.75 -0.02 1.19 16 20 C -0.06 -0.77 3.76 -104.62 -0.39 -1.16 16 21 C -0.11 -1.33 8.71 -39.59 -0.34 -1.67 16 22 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 23 C -0.13 -1.32 10.05 -39.59 -0.40 -1.72 16 24 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 25 C -0.12 -1.38 9.67 -39.58 -0.38 -1.77 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.56 7.38 -51.93 -0.38 0.18 16 29 H 0.08 1.21 7.62 -51.93 -0.40 0.82 16 30 H 0.06 0.72 7.21 -51.93 -0.37 0.34 16 31 H 0.03 0.53 7.81 -51.93 -0.41 0.12 16 32 H 0.07 1.06 7.59 -51.93 -0.39 0.66 16 33 H 0.06 1.13 7.56 -51.93 -0.39 0.74 16 34 H 0.03 0.62 8.01 -51.93 -0.42 0.20 16 35 H 0.06 1.53 8.06 -51.93 -0.42 1.11 16 36 H 0.07 1.66 7.86 -51.93 -0.41 1.25 16 37 H 0.38 10.31 7.05 45.56 0.32 10.63 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.03 0.77 7.39 -51.93 -0.38 0.38 16 40 H 0.08 1.72 7.40 -51.93 -0.38 1.34 16 41 H 0.12 1.32 7.13 -52.49 -0.37 0.95 16 42 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.12 1.28 7.95 -52.48 -0.42 0.86 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -27.63 352.04 -10.34 -37.97 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.78 Total: 11.92 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.89 Total: -20.37 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: -0.50 Total: -34.42 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.46 Total: -16.25 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.63 -10.34 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.936 kcal (2) G-P(sol) polarization free energy of solvation -27.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds