Wall clock time and date at job start Tue Mar 31 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47227 * 2 1 4 4 H 1.09002 * 109.47493 * 305.00283 * 3 2 1 5 5 C 1.53000 * 109.47345 * 184.99985 * 3 2 1 6 6 N 1.46901 * 109.46769 * 65.00032 * 5 3 2 7 7 C 1.48534 * 111.00172 * 52.60936 * 6 5 3 8 8 C 1.54933 * 103.22824 * 159.71827 * 7 6 5 9 9 C 1.54594 * 102.92252 * 322.58255 * 8 7 6 10 10 O 1.42899 * 110.39461 * 263.00131 * 9 8 7 11 11 C 1.50703 * 110.30842 * 140.87414 * 9 8 7 12 12 H 1.07995 * 119.99785 * 244.28913 * 11 9 8 13 13 C 1.37877 * 119.99869 * 64.28221 * 11 9 8 14 14 N 1.31513 * 120.00121 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99986 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46876 * 60.00359 * 15 13 11 17 17 H 1.48494 * 109.47144 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47175 * 300.00663 * 15 13 11 19 19 C 1.47912 * 110.99681 * 170.00135 * 6 5 3 20 20 C 1.50703 * 109.46941 * 65.00352 * 3 2 1 21 21 C 1.38229 * 120.00230 * 59.72564 * 20 3 2 22 22 C 1.38233 * 119.99994 * 179.74423 * 21 20 3 23 23 C 1.38237 * 119.99859 * 0.55007 * 22 21 20 24 24 C 1.38228 * 120.00159 * 359.70449 * 23 22 21 25 25 C 1.38233 * 119.99981 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.47339 * 59.99924 * 1 2 3 27 27 H 1.09001 * 109.47528 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47017 * 299.99820 * 1 2 3 29 29 H 1.09002 * 109.47017 * 240.00180 * 2 1 3 30 30 H 1.08997 * 109.46970 * 120.00647 * 2 1 3 31 31 H 1.09002 * 109.47398 * 185.00327 * 5 3 2 32 32 H 1.09001 * 109.47194 * 305.00507 * 5 3 2 33 33 H 1.08997 * 110.66294 * 278.15766 * 7 6 5 34 34 H 1.09001 * 110.66815 * 41.27720 * 7 6 5 35 35 H 1.09002 * 110.72385 * 204.22928 * 8 7 6 36 36 H 1.09000 * 110.87522 * 81.01746 * 8 7 6 37 37 H 0.96705 * 113.99857 * 295.76834 * 10 9 8 38 38 H 0.96996 * 120.00088 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.91505 * 333.51116 * 19 6 5 40 40 H 1.08999 * 109.91449 * 94.60846 * 19 6 5 41 41 H 1.08001 * 119.99926 * 0.02562 * 21 20 3 42 42 H 1.08006 * 119.99992 * 180.27347 * 22 21 20 43 43 H 1.08002 * 119.99907 * 179.72296 * 23 22 21 44 44 H 1.08004 * 120.00232 * 179.97438 * 24 23 22 45 45 H 1.08006 * 120.00050 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 3.9489 0.8963 -1.4334 7 6 3.2388 1.5972 -2.5337 8 6 4.1151 1.2897 -3.7738 9 6 5.5511 1.3391 -3.2033 10 8 6.1385 2.6194 -3.4434 11 6 6.3959 0.2532 -3.8182 12 1 6.7891 -0.5403 -3.2001 13 6 6.6668 0.2728 -5.1700 14 7 6.1883 1.2393 -5.9226 15 14 7.7146 -1.0728 -5.9321 16 1 7.0632 -2.3897 -5.7158 17 1 7.8570 -0.8238 -7.3891 18 1 9.0571 -1.0743 -5.2971 19 6 5.3912 1.0998 -1.6905 20 6 1.6414 2.1161 1.2878 21 6 2.0721 1.6047 2.4976 22 6 1.7108 2.2257 3.6785 23 6 0.9094 3.3517 3.6502 24 6 0.4742 3.8601 2.4407 25 6 0.8401 3.2423 1.2594 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.9355 2.4654 -0.0365 32 1 3.9954 0.8310 0.6659 33 1 2.2347 1.1930 -2.6624 34 1 3.2014 2.6701 -2.3455 35 1 3.9786 2.0517 -4.5412 36 1 3.8918 0.2996 -4.1714 37 1 6.2636 2.8254 -4.3800 38 1 6.3792 1.2533 -6.8735 39 1 5.7480 1.9686 -1.1373 40 1 5.9505 0.2135 -1.3906 41 1 2.6947 0.7225 2.5199 42 1 2.0511 1.8287 4.6235 43 1 0.6234 3.8343 4.5730 44 1 -0.1523 4.7396 2.4185 45 1 0.4998 3.6393 0.3144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592523314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:00 Heat of formation + Delta-G solvation = -50.760720 kcal Electronic energy + Delta-G solvation = -23498.962233 eV Core-core repulsion = 20286.749695 eV Total energy + Delta-G solvation = -3212.212538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.85210 -39.82201 -37.39602 -35.55870 -34.12410 -31.94731 -31.75847 -31.31495 -29.91317 -28.43037 -26.21087 -24.43712 -23.77171 -23.08708 -22.16605 -21.23968 -20.34996 -19.11467 -17.78257 -16.98627 -16.92007 -16.42192 -16.28574 -15.74433 -15.61963 -15.27448 -14.93029 -14.69055 -14.55445 -14.18344 -13.98648 -13.71758 -13.42529 -13.37834 -13.29734 -13.07173 -12.87987 -12.58570 -12.41382 -12.33759 -12.17034 -12.05348 -11.99081 -11.92234 -11.63225 -11.44224 -11.36845 -11.05173 -10.59796 -10.09313 -9.76416 -9.53385 -9.31610 -8.20660 -6.34416 0.50921 0.55513 1.42766 1.43187 1.51233 2.40072 2.89687 3.00789 3.14977 3.70400 3.89997 3.96236 4.09853 4.16374 4.21545 4.28738 4.33541 4.35116 4.38524 4.49106 4.54853 4.60082 4.68073 4.69065 4.74471 4.82594 4.84152 4.99839 5.07140 5.11765 5.15640 5.22340 5.24567 5.27978 5.39970 5.42589 5.52373 5.61155 5.65294 5.67696 5.77690 5.82260 5.98305 6.15683 6.17808 6.24770 6.69688 7.35441 7.45340 8.85234 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029621 B = 0.003534 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.060142 B = 7921.276199 C = 8093.898497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C -0.040 4.040 4 H 0.073 0.927 5 C 0.060 3.940 6 N -0.507 5.507 7 C 0.045 3.955 8 C -0.110 4.110 9 C 0.227 3.773 10 O -0.604 6.604 11 C -0.555 4.555 12 H 0.054 0.946 13 C 0.027 3.973 14 N -0.915 5.915 15 Si 0.960 3.040 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.275 1.275 19 C 0.062 3.938 20 C -0.076 4.076 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.133 4.133 24 C -0.125 4.125 25 C -0.132 4.132 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.032 0.968 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.378 0.622 38 H 0.269 0.731 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.621 1.815 15.328 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C -0.058 4.058 4 H 0.091 0.909 5 C -0.069 4.069 6 N -0.232 5.232 7 C -0.082 4.082 8 C -0.149 4.149 9 C 0.187 3.813 10 O -0.413 6.413 11 C -0.593 4.593 12 H 0.072 0.928 13 C -0.173 4.173 14 N -0.556 5.556 15 Si 0.786 3.214 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.200 1.200 19 C -0.066 4.066 20 C -0.077 4.077 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.151 4.151 24 C -0.143 4.143 25 C -0.150 4.150 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.228 0.772 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.142 0.858 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.765 1.348 15.821 20.373 hybrid contribution 1.055 0.327 -1.427 1.805 sum -11.710 1.675 14.394 18.631 Atomic orbital electron populations 1.21719 0.95201 1.01727 1.01457 1.21450 0.95993 0.94373 1.02442 1.20202 0.93524 0.97266 0.94840 0.90853 1.22354 0.95791 0.97002 0.91704 1.64836 1.03798 1.52540 1.01981 1.23167 0.98208 0.95569 0.91292 1.22753 0.96626 0.99755 0.95795 1.19617 0.89867 0.81283 0.90538 1.86080 1.85200 1.38241 1.31809 1.21939 1.33116 1.10185 0.94074 0.92752 1.25701 0.96252 0.98010 0.97312 1.69693 1.45699 1.33544 1.06644 0.85579 0.79117 0.79563 0.77152 1.19706 1.20582 1.20037 1.22703 0.89330 0.98932 0.95679 1.19847 0.97507 0.95703 0.94615 1.21179 1.00494 1.00539 0.92219 1.21422 0.98152 0.96191 0.98476 1.21445 0.98241 0.96745 0.98637 1.21399 1.00195 1.00341 0.92343 1.21266 0.98842 0.95838 0.99093 0.93039 0.92209 0.92950 0.91759 0.91766 0.96251 0.90240 0.89313 0.94940 0.93470 0.93257 0.77190 0.92151 0.95243 0.90873 0.85770 0.84300 0.84063 0.84371 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.73 71.98 0.70 -2.30 16 2 C -0.11 -2.55 5.24 30.59 0.16 -2.39 16 3 C -0.04 -1.02 1.72 -11.54 -0.02 -1.04 16 4 H 0.07 1.98 6.25 -2.39 -0.01 1.96 16 5 C 0.06 1.86 4.16 86.30 0.36 2.22 16 6 N -0.51 -19.20 4.77 -882.99 -4.21 -23.41 16 7 C 0.05 1.74 5.09 86.65 0.44 2.18 16 8 C -0.11 -5.23 5.50 31.80 0.17 -5.05 16 9 C 0.23 11.60 0.99 -10.66 -0.01 11.59 16 10 O -0.60 -32.77 12.93 -148.98 -1.93 -34.70 16 11 C -0.55 -30.58 8.10 25.60 0.21 -30.37 16 12 H 0.05 2.99 7.35 -2.91 -0.02 2.97 16 13 C 0.03 1.46 5.26 84.65 0.45 1.90 16 14 N -0.92 -49.78 10.88 21.45 0.23 -49.54 16 15 Si 0.96 42.89 29.54 68.60 2.03 44.92 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 C 0.06 2.75 6.16 86.44 0.53 3.29 16 20 C -0.08 -1.78 3.76 -19.86 -0.07 -1.86 16 21 C -0.13 -2.72 8.71 22.27 0.19 -2.53 16 22 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 23 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 24 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 25 C -0.13 -2.89 9.67 22.27 0.22 -2.67 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.08 7.38 -2.39 -0.02 1.06 16 29 H 0.06 1.81 7.62 -2.39 -0.02 1.79 16 30 H 0.06 1.48 7.21 -2.39 -0.02 1.46 16 31 H 0.02 0.65 7.81 -2.39 -0.02 0.63 16 32 H 0.08 2.33 7.59 -2.39 -0.02 2.31 16 33 H 0.09 3.00 7.56 -2.39 -0.02 2.98 16 34 H 0.03 1.25 8.01 -2.39 -0.02 1.23 16 35 H 0.05 2.33 8.06 -2.39 -0.02 2.32 16 36 H 0.05 2.47 7.86 -2.39 -0.02 2.45 16 37 H 0.38 20.91 7.05 -74.05 -0.52 20.39 16 38 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 39 H 0.03 1.32 7.39 -2.39 -0.02 1.31 16 40 H 0.07 3.30 7.40 -2.39 -0.02 3.28 16 41 H 0.12 2.51 7.13 -2.91 -0.02 2.49 16 42 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 45 H 0.12 2.49 7.95 -2.91 -0.02 2.46 16 Total: -1.00 -58.80 352.04 0.56 -58.24 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.44 Total: 37.75 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 4.00 Total: -33.25 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -3.98 Total: -72.95 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -1.93 Total: -34.70 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -58.80 0.56 -58.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.482 kcal (2) G-P(sol) polarization free energy of solvation -58.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds