Wall clock time and date at job start Tue Mar 31 2020 06:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47155 * 2 1 4 4 O 1.42900 * 109.47337 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00202 * 180.02562 * 4 3 2 6 6 C 1.38749 * 120.05423 * 0.02562 * 5 4 3 7 7 C 1.38131 * 119.94237 * 179.68161 * 6 5 4 8 8 C 1.38288 * 120.05323 * 0.57337 * 7 6 5 9 9 C 1.50701 * 119.94409 * 179.72799 * 8 7 6 10 10 N 1.46499 * 109.47483 * 99.18955 * 9 8 7 11 11 C 1.36940 * 119.99951 * 88.39198 * 10 9 8 12 12 H 1.07997 * 119.99554 * 34.88492 * 11 10 9 13 13 C 1.38804 * 119.99903 * 214.88924 * 11 10 9 14 14 N 1.31619 * 120.00351 * 13.83901 * 13 11 10 15 15 Si 1.86803 * 119.99755 * 193.83756 * 13 11 10 16 16 H 1.48501 * 109.46725 * 180.02562 * 15 13 11 17 17 H 1.48502 * 109.47333 * 300.00069 * 15 13 11 18 18 H 1.48500 * 109.46994 * 60.00528 * 15 13 11 19 19 C 1.46493 * 119.99924 * 268.39287 * 10 9 8 20 20 C 1.53003 * 117.50276 * 4.75415 * 19 10 9 21 21 C 1.53000 * 117.50000 * 296.09402 * 19 10 9 22 22 C 1.38247 * 120.11261 * 359.44391 * 8 7 6 23 23 C 1.50698 * 119.97016 * 180.27498 * 22 8 7 24 24 C 1.38165 * 120.05515 * 0.26285 * 22 8 7 25 25 H 1.08998 * 109.47126 * 299.99701 * 1 2 3 26 26 H 1.09004 * 109.47332 * 60.00026 * 1 2 3 27 27 H 1.09000 * 109.47220 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46819 * 240.00016 * 2 1 3 29 29 H 1.09003 * 109.47156 * 120.00498 * 2 1 3 30 30 H 1.09004 * 109.47244 * 60.00277 * 3 2 1 31 31 H 1.09003 * 109.47495 * 300.00290 * 3 2 1 32 32 H 1.08002 * 120.03117 * 359.97438 * 6 5 4 33 33 H 1.07997 * 119.97355 * 180.31353 * 7 6 5 34 34 H 1.09005 * 109.46899 * 339.18971 * 9 8 7 35 35 H 1.08999 * 109.46747 * 219.19500 * 9 8 7 36 36 H 0.97000 * 120.00142 * 174.97393 * 14 13 11 37 37 H 1.09000 * 115.54711 * 150.42483 * 19 10 9 38 38 H 1.08998 * 117.49630 * 0.02562 * 20 19 10 39 39 H 1.09003 * 117.49884 * 145.01813 * 20 19 10 40 40 H 1.09002 * 117.49715 * 214.98022 * 21 19 10 41 41 H 1.09001 * 117.49857 * 359.97438 * 21 19 10 42 42 H 1.08994 * 109.46976 * 92.87234 * 23 22 8 43 43 H 1.09003 * 109.47104 * 212.86245 * 23 22 8 44 44 H 1.08994 * 109.47338 * 332.86466 * 23 22 8 45 45 H 1.08000 * 120.02688 * 179.97438 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0860 2.6533 -0.0001 6 6 3.3314 3.8177 0.0014 7 6 3.9609 5.0472 0.0085 8 6 5.3419 5.1182 0.0021 9 6 6.0261 6.4610 0.0037 10 7 6.4510 6.7910 1.3663 11 6 7.6787 6.3859 1.8178 12 1 8.5188 6.3515 1.1401 13 6 7.8432 6.0194 3.1464 14 7 6.7896 5.7971 3.9032 15 14 9.5602 5.8415 3.8604 16 1 9.4639 5.4439 5.2880 17 1 10.3047 4.8011 3.1064 18 1 10.2770 7.1378 3.7545 19 6 5.5624 7.5545 2.2459 20 6 4.1620 7.8819 1.7238 21 6 5.2168 8.9860 1.8309 22 6 6.0960 3.9595 0.0002 23 6 7.6008 4.0407 -0.0005 24 6 5.4711 2.7272 -0.0008 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 2.2528 3.7628 0.0018 33 1 3.3740 5.9538 0.0149 34 1 5.3334 7.2221 -0.3553 35 1 6.8975 6.4254 -0.6501 36 1 6.9035 5.4707 4.8095 37 1 5.6674 7.3508 3.3116 38 1 3.9017 7.5288 0.7260 39 1 3.3457 7.8939 2.4460 40 1 5.0939 9.7240 2.6236 41 1 5.6509 9.3599 0.9036 42 1 7.9669 4.0075 1.0256 43 1 8.0098 3.1990 -0.5595 44 1 7.9141 4.9740 -0.4681 45 1 6.0607 1.8224 -0.0027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597000212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:27 Heat of formation + Delta-G solvation = 24.724664 kcal Electronic energy + Delta-G solvation = -23542.303987 eV Core-core repulsion = 20333.364742 eV Total energy + Delta-G solvation = -3208.939246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.75030 -37.99579 -36.49593 -34.04538 -33.22357 -31.78009 -31.47698 -29.28604 -27.18359 -26.01527 -24.88391 -23.35462 -22.19373 -21.53412 -21.03825 -20.15240 -19.11011 -17.28436 -16.96309 -16.15642 -15.76336 -15.11426 -14.69122 -14.44543 -14.11716 -13.99685 -13.79244 -13.48590 -13.08272 -12.62521 -12.53637 -12.34748 -12.24375 -11.83426 -11.67959 -11.54168 -11.18751 -11.12246 -11.10023 -10.96399 -10.78764 -10.69462 -10.53013 -10.28002 -10.15929 -10.11865 -9.84952 -9.32841 -9.25243 -8.45427 -8.06805 -7.41257 -6.49899 -5.79510 -3.36579 2.03286 2.13584 3.34708 3.41493 3.42407 3.46727 4.34310 4.49775 4.78202 4.81279 5.10993 5.11195 5.28212 5.30216 5.32480 5.36501 5.44542 5.48497 5.54378 5.75845 5.78603 5.88812 5.92829 5.99387 6.03947 6.09602 6.17437 6.20531 6.32091 6.35046 6.40807 6.46323 6.52581 6.70967 6.72689 6.81941 6.90840 7.03490 7.06728 7.15147 7.46378 7.54287 7.72947 7.81049 7.94741 8.45059 9.17161 9.75459 10.31190 11.21841 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016828 B = 0.004627 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.491851 B = 6050.168612 C = 6716.473797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.061 3.939 4 O -0.323 6.323 5 C 0.112 3.888 6 C -0.219 4.219 7 C -0.076 4.076 8 C -0.109 4.109 9 C 0.175 3.825 10 N -0.545 5.545 11 C -0.252 4.252 12 H 0.069 0.931 13 C 0.014 3.986 14 N -0.892 5.892 15 Si 0.899 3.101 16 H -0.290 1.290 17 H -0.280 1.280 18 H -0.282 1.282 19 C 0.165 3.835 20 C -0.225 4.225 21 C -0.240 4.240 22 C -0.016 4.016 23 C -0.108 4.108 24 C -0.159 4.159 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.257 0.743 37 H 0.146 0.854 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.495 -5.912 -7.816 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.014 4.014 4 O -0.238 6.238 5 C 0.067 3.933 6 C -0.238 4.238 7 C -0.095 4.095 8 C -0.112 4.112 9 C 0.049 3.951 10 N -0.261 5.261 11 C -0.382 4.382 12 H 0.086 0.914 13 C -0.186 4.186 14 N -0.534 5.534 15 Si 0.728 3.272 16 H -0.216 1.216 17 H -0.206 1.206 18 H -0.208 1.208 19 C 0.056 3.944 20 C -0.263 4.263 21 C -0.281 4.281 22 C -0.016 4.016 23 C -0.164 4.164 24 C -0.178 4.178 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.162 0.838 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.363 -6.102 -7.614 12.851 hybrid contribution 0.298 -0.009 0.594 0.665 sum -8.065 -6.111 -7.020 12.316 Atomic orbital electron populations 1.21687 0.94547 1.02217 1.02184 1.21472 0.95787 0.95349 1.03483 1.22727 0.79518 0.98038 1.01132 1.85977 1.20418 1.27864 1.89523 1.18787 0.92115 0.83443 0.98919 1.20978 0.98850 0.92680 1.11272 1.20767 0.94360 0.96227 0.98180 1.20677 0.93077 0.97467 0.99996 1.19981 0.96336 0.89829 0.88953 1.43495 1.15511 1.57993 1.09090 1.19040 0.85404 1.39913 0.93831 0.91377 1.25203 0.96771 0.98544 0.98071 1.69737 1.27703 1.46710 1.09279 0.86432 0.84288 0.78220 0.78225 1.21607 1.20612 1.20795 1.21708 0.87254 0.87539 0.97937 1.23284 0.94800 1.06471 1.01768 1.23452 1.06504 0.95614 1.02500 1.19493 0.96277 0.91212 0.94664 1.20929 0.90726 1.00986 1.03741 1.20162 0.90959 0.97963 1.08675 0.92363 0.92471 0.91960 0.91060 0.90944 0.92358 0.92537 0.86836 0.86692 0.93528 0.92617 0.93253 0.83783 0.89955 0.90560 0.90788 0.90624 0.89048 0.93812 0.91140 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.25 6.30 -26.73 -0.17 -1.41 16 3 C 0.06 0.78 4.74 37.15 0.18 0.96 16 4 O -0.32 -5.41 10.14 -19.43 -0.20 -5.61 16 5 C 0.11 2.08 6.69 -39.22 -0.26 1.81 16 6 C -0.22 -3.90 9.04 -39.43 -0.36 -4.26 16 7 C -0.08 -1.45 9.30 -39.60 -0.37 -1.82 16 8 C -0.11 -2.23 5.46 -104.60 -0.57 -2.80 16 9 C 0.17 3.60 4.87 -5.19 -0.03 3.58 16 10 N -0.55 -12.98 2.78 -167.03 -0.46 -13.45 16 11 C -0.25 -6.40 6.86 -15.06 -0.10 -6.51 16 12 H 0.07 1.69 7.23 -52.49 -0.38 1.31 16 13 C 0.01 0.37 5.19 -17.43 -0.09 0.28 16 14 N -0.89 -24.77 10.91 55.49 0.61 -24.17 16 15 Si 0.90 20.82 29.58 -169.99 -5.03 15.79 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C 0.16 3.87 5.87 -67.93 -0.40 3.47 16 20 C -0.22 -4.50 9.57 -26.69 -0.26 -4.75 16 21 C -0.24 -4.86 10.29 -26.69 -0.27 -5.14 16 22 C -0.02 -0.32 5.88 -104.65 -0.62 -0.93 16 23 C -0.11 -2.05 8.21 36.00 0.30 -1.76 16 24 C -0.16 -3.08 9.65 -39.43 -0.38 -3.46 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 31 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 32 H 0.11 1.72 6.30 -52.49 -0.33 1.39 16 33 H 0.12 2.01 6.03 -52.49 -0.32 1.70 16 34 H 0.05 0.90 6.02 -51.93 -0.31 0.59 16 35 H 0.06 1.11 6.27 -51.93 -0.33 0.78 16 36 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 37 H 0.15 3.86 5.61 -51.93 -0.29 3.57 16 38 H 0.08 1.56 3.98 -51.93 -0.21 1.36 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.09 1.99 7.08 -51.93 -0.37 1.62 16 43 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.07 1.32 5.31 -51.93 -0.28 1.04 16 45 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -28.12 351.34 -9.78 -37.90 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.96 Total: 7.77 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -3.03 Total: -23.53 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.14 Total: -37.61 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.20 Total: -5.61 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.12 -9.78 -37.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597000212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.625 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds