Wall clock time and date at job start Tue Mar 31 2020 06:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47155 * 2 1 4 4 O 1.42900 * 109.47337 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00202 * 180.02562 * 4 3 2 6 6 C 1.38749 * 120.05423 * 0.02562 * 5 4 3 7 7 C 1.38131 * 119.94237 * 179.68161 * 6 5 4 8 8 C 1.38288 * 120.05323 * 0.57337 * 7 6 5 9 9 C 1.50701 * 119.94409 * 179.72799 * 8 7 6 10 10 N 1.46499 * 109.47483 * 99.18955 * 9 8 7 11 11 C 1.36940 * 119.99951 * 88.39198 * 10 9 8 12 12 H 1.07997 * 119.99554 * 34.88492 * 11 10 9 13 13 C 1.38804 * 119.99903 * 214.88924 * 11 10 9 14 14 N 1.31619 * 120.00351 * 13.83901 * 13 11 10 15 15 Si 1.86803 * 119.99755 * 193.83756 * 13 11 10 16 16 H 1.48501 * 109.46725 * 180.02562 * 15 13 11 17 17 H 1.48502 * 109.47333 * 300.00069 * 15 13 11 18 18 H 1.48500 * 109.46994 * 60.00528 * 15 13 11 19 19 C 1.46493 * 119.99924 * 268.39287 * 10 9 8 20 20 C 1.53003 * 117.50276 * 4.75415 * 19 10 9 21 21 C 1.53000 * 117.50000 * 296.09402 * 19 10 9 22 22 C 1.38247 * 120.11261 * 359.44391 * 8 7 6 23 23 C 1.50698 * 119.97016 * 180.27498 * 22 8 7 24 24 C 1.38165 * 120.05515 * 0.26285 * 22 8 7 25 25 H 1.08998 * 109.47126 * 299.99701 * 1 2 3 26 26 H 1.09004 * 109.47332 * 60.00026 * 1 2 3 27 27 H 1.09000 * 109.47220 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46819 * 240.00016 * 2 1 3 29 29 H 1.09003 * 109.47156 * 120.00498 * 2 1 3 30 30 H 1.09004 * 109.47244 * 60.00277 * 3 2 1 31 31 H 1.09003 * 109.47495 * 300.00290 * 3 2 1 32 32 H 1.08002 * 120.03117 * 359.97438 * 6 5 4 33 33 H 1.07997 * 119.97355 * 180.31353 * 7 6 5 34 34 H 1.09005 * 109.46899 * 339.18971 * 9 8 7 35 35 H 1.08999 * 109.46747 * 219.19500 * 9 8 7 36 36 H 0.97000 * 120.00142 * 174.97393 * 14 13 11 37 37 H 1.09000 * 115.54711 * 150.42483 * 19 10 9 38 38 H 1.08998 * 117.49630 * 0.02562 * 20 19 10 39 39 H 1.09003 * 117.49884 * 145.01813 * 20 19 10 40 40 H 1.09002 * 117.49715 * 214.98022 * 21 19 10 41 41 H 1.09001 * 117.49857 * 359.97438 * 21 19 10 42 42 H 1.08994 * 109.46976 * 92.87234 * 23 22 8 43 43 H 1.09003 * 109.47104 * 212.86245 * 23 22 8 44 44 H 1.08994 * 109.47338 * 332.86466 * 23 22 8 45 45 H 1.08000 * 120.02688 * 179.97438 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0860 2.6533 -0.0001 6 6 3.3314 3.8177 0.0014 7 6 3.9609 5.0472 0.0085 8 6 5.3419 5.1182 0.0021 9 6 6.0261 6.4610 0.0037 10 7 6.4510 6.7910 1.3663 11 6 7.6787 6.3859 1.8178 12 1 8.5188 6.3515 1.1401 13 6 7.8432 6.0194 3.1464 14 7 6.7896 5.7971 3.9032 15 14 9.5602 5.8415 3.8604 16 1 9.4639 5.4439 5.2880 17 1 10.3047 4.8011 3.1064 18 1 10.2770 7.1378 3.7545 19 6 5.5624 7.5545 2.2459 20 6 4.1620 7.8819 1.7238 21 6 5.2168 8.9860 1.8309 22 6 6.0960 3.9595 0.0002 23 6 7.6008 4.0407 -0.0005 24 6 5.4711 2.7272 -0.0008 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 2.2528 3.7628 0.0018 33 1 3.3740 5.9538 0.0149 34 1 5.3334 7.2221 -0.3553 35 1 6.8975 6.4254 -0.6501 36 1 6.9035 5.4707 4.8095 37 1 5.6674 7.3508 3.3116 38 1 3.9017 7.5288 0.7260 39 1 3.3457 7.8939 2.4460 40 1 5.0939 9.7240 2.6236 41 1 5.6509 9.3599 0.9036 42 1 7.9669 4.0075 1.0256 43 1 8.0098 3.1990 -0.5595 44 1 7.9141 4.9740 -0.4681 45 1 6.0607 1.8224 -0.0027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597000212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:27 Heat of formation + Delta-G solvation = 12.345255 kcal Electronic energy + Delta-G solvation = -23542.840799 eV Core-core repulsion = 20333.364742 eV Total energy + Delta-G solvation = -3209.476057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13036 -39.46719 -38.06288 -35.17167 -34.76798 -33.37939 -33.07304 -30.88633 -28.57689 -27.13531 -26.53426 -25.10683 -23.50386 -22.85134 -22.44383 -21.61016 -20.77403 -18.81979 -18.56553 -17.19734 -17.15982 -16.90129 -16.32808 -16.03711 -15.61494 -15.25257 -15.11691 -14.86793 -14.52555 -14.17231 -13.99446 -13.58497 -13.37814 -13.07284 -13.06886 -12.97048 -12.79562 -12.74638 -12.54992 -12.37359 -12.20666 -12.04689 -12.00374 -11.92262 -11.74909 -11.44392 -11.37733 -11.04852 -10.98810 -10.34057 -9.55216 -8.88520 -8.35204 -7.74185 -5.33194 0.55628 0.65214 1.49144 1.51804 1.56339 2.29323 2.52632 2.92052 3.31972 3.48741 3.70973 3.87796 3.94818 4.00727 4.08312 4.26729 4.31112 4.36619 4.45590 4.49308 4.51347 4.55220 4.57762 4.63204 4.74007 4.80735 4.81453 4.88614 4.93017 5.01788 5.10343 5.11987 5.17746 5.20878 5.23027 5.34911 5.41880 5.47044 5.54029 5.63730 5.72615 5.93981 6.01510 6.04023 6.51339 6.59379 7.24796 7.90063 8.41151 9.23979 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016828 B = 0.004627 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.491851 B = 6050.168612 C = 6716.473797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.052 3.948 4 O -0.335 6.335 5 C 0.110 3.890 6 C -0.218 4.218 7 C -0.081 4.081 8 C -0.129 4.129 9 C 0.178 3.822 10 N -0.558 5.558 11 C -0.244 4.244 12 H 0.070 0.930 13 C -0.033 4.033 14 N -0.922 5.922 15 Si 0.949 3.051 16 H -0.300 1.300 17 H -0.272 1.272 18 H -0.280 1.280 19 C 0.126 3.874 20 C -0.203 4.203 21 C -0.221 4.221 22 C -0.034 4.034 23 C -0.099 4.099 24 C -0.176 4.176 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.130 0.870 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.247 0.753 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 -6.050 -9.183 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.023 4.023 4 O -0.249 6.249 5 C 0.065 3.935 6 C -0.237 4.237 7 C -0.099 4.099 8 C -0.132 4.132 9 C 0.053 3.947 10 N -0.274 5.274 11 C -0.374 4.374 12 H 0.088 0.912 13 C -0.229 4.229 14 N -0.568 5.568 15 Si 0.778 3.222 16 H -0.227 1.227 17 H -0.198 1.198 18 H -0.206 1.206 19 C 0.017 3.983 20 C -0.241 4.241 21 C -0.262 4.262 22 C -0.035 4.035 23 C -0.155 4.155 24 C -0.194 4.194 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.814 -6.238 -9.010 14.711 hybrid contribution 0.651 -0.010 0.947 1.149 sum -9.163 -6.247 -8.064 13.712 Atomic orbital electron populations 1.21678 0.92569 1.03308 1.02662 1.21501 0.97340 0.93551 1.03360 1.23078 0.77358 1.00063 1.01784 1.85980 1.22755 1.27052 1.89159 1.18927 0.92122 0.84440 0.97978 1.21266 1.00305 0.91964 1.10170 1.20989 0.93966 0.97350 0.97641 1.20730 0.93939 0.97193 1.01369 1.20007 0.96861 0.90511 0.87323 1.43592 1.15257 1.58575 1.09997 1.19247 0.86444 1.37980 0.93724 0.91244 1.25742 0.99137 0.99402 0.98656 1.69920 1.29145 1.48724 1.08977 0.85621 0.81402 0.78194 0.76957 1.22675 1.19804 1.20602 1.21491 0.90008 0.90092 0.96682 1.23290 0.93494 1.04952 1.02339 1.23412 1.05560 0.94382 1.02815 1.19687 0.96758 0.91739 0.95322 1.20797 0.90528 1.02084 1.02101 1.20350 0.91889 0.98021 1.09160 0.92221 0.91662 0.90617 0.90796 0.91529 0.92280 0.91151 0.84071 0.85209 0.92124 0.92288 0.94300 0.87330 0.88646 0.89601 0.89702 0.89958 0.92099 0.91334 0.91197 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.12 -2.18 6.30 30.59 0.19 -1.99 16 3 C 0.05 1.21 4.74 71.98 0.34 1.55 16 4 O -0.33 -10.75 10.14 -92.42 -0.94 -11.68 16 5 C 0.11 3.96 6.69 22.51 0.15 4.11 16 6 C -0.22 -7.35 9.04 22.37 0.20 -7.15 16 7 C -0.08 -2.92 9.30 22.26 0.21 -2.71 16 8 C -0.13 -5.19 5.46 -19.85 -0.11 -5.29 16 9 C 0.18 7.18 4.87 85.63 0.42 7.60 16 10 N -0.56 -26.49 2.78 -682.36 -1.89 -28.39 16 11 C -0.24 -12.49 6.86 84.03 0.58 -11.91 16 12 H 0.07 3.46 7.23 -2.91 -0.02 3.44 16 13 C -0.03 -1.77 5.19 84.86 0.44 -1.33 16 14 N -0.92 -52.89 10.91 21.65 0.24 -52.65 16 15 Si 0.95 43.66 29.58 68.60 2.03 45.69 16 16 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 C 0.13 5.90 5.87 44.99 0.26 6.16 16 20 C -0.20 -7.71 9.57 30.62 0.29 -7.42 16 21 C -0.22 -8.58 10.29 30.62 0.31 -8.26 16 22 C -0.03 -1.38 5.88 -19.88 -0.12 -1.50 16 23 C -0.10 -3.78 8.21 71.24 0.58 -3.19 16 24 C -0.18 -6.73 9.65 22.37 0.22 -6.51 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.37 7.66 -2.38 -0.02 1.35 16 31 H 0.07 1.45 7.66 -2.39 -0.02 1.43 16 32 H 0.14 3.86 6.30 -2.91 -0.02 3.84 16 33 H 0.13 4.20 6.03 -2.91 -0.02 4.18 16 34 H 0.06 2.23 6.02 -2.38 -0.01 2.22 16 35 H 0.06 2.30 6.27 -2.39 -0.01 2.29 16 36 H 0.25 14.03 8.32 -92.71 -0.77 13.26 16 37 H 0.11 5.97 5.61 -2.39 -0.01 5.96 16 38 H 0.10 3.36 3.98 -2.39 -0.01 3.35 16 39 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.08 3.07 8.14 -2.39 -0.02 3.06 16 41 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.06 2.70 7.08 -2.39 -0.02 2.69 16 43 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 44 H 0.07 2.61 5.31 -2.39 -0.01 2.60 16 45 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -60.66 351.34 5.10 -55.56 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.98 Total: 30.50 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 4.69 Total: -39.03 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -1.66 Total: -81.04 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -0.94 Total: -11.68 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -60.66 5.10 -55.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597000212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.910 kcal (2) G-P(sol) polarization free energy of solvation -60.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds