Wall clock time and date at job start Tue Mar 31 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47260 * 2 1 4 4 H 1.09003 * 109.46669 * 304.99873 * 3 2 1 5 5 C 1.50700 * 109.47243 * 185.00225 * 3 2 1 6 6 H 1.07998 * 119.99515 * 240.00060 * 5 3 2 7 7 C 1.37875 * 119.99974 * 59.99347 * 5 3 2 8 8 N 1.31508 * 120.00231 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99647 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47514 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47046 * 120.00361 * 9 7 5 12 12 H 1.48498 * 109.47308 * 239.99867 * 9 7 5 13 13 N 1.46493 * 109.47354 * 64.99597 * 3 2 1 14 14 C 1.34772 * 120.00148 * 275.00358 * 13 3 2 15 15 O 1.21278 * 120.00394 * 359.97438 * 14 13 3 16 16 C 1.50707 * 119.99942 * 180.02562 * 14 13 3 17 17 H 1.08995 * 109.47292 * 59.99855 * 16 14 13 18 18 C 1.53002 * 109.47078 * 299.99787 * 16 14 13 19 19 C 1.52999 * 109.47105 * 180.02562 * 16 14 13 20 20 C 1.50695 * 109.47313 * 184.99600 * 19 16 14 21 21 C 1.38253 * 120.00596 * 265.23416 * 20 19 16 22 22 C 1.38210 * 120.00401 * 180.25469 * 21 20 19 23 23 C 1.38260 * 120.00052 * 359.78440 * 22 21 20 24 24 C 1.38216 * 119.99407 * 359.96186 * 23 22 21 25 25 C 1.38218 * 119.99818 * 84.99738 * 20 19 16 26 26 C 1.50703 * 119.99968 * 0.02562 * 25 20 19 27 27 H 1.09005 * 109.46797 * 300.00463 * 1 2 3 28 28 H 1.08996 * 109.46968 * 60.00216 * 1 2 3 29 29 H 1.08993 * 109.47183 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47516 * 239.99617 * 2 1 3 31 31 H 1.09008 * 109.47190 * 119.99534 * 2 1 3 32 32 H 0.97000 * 120.00095 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99936 * 94.99931 * 13 3 2 34 34 H 1.09009 * 109.47081 * 300.00023 * 18 16 14 35 35 H 1.09003 * 109.47067 * 59.99956 * 18 16 14 36 36 H 1.08995 * 109.46911 * 180.02562 * 18 16 14 37 37 H 1.09007 * 109.47248 * 64.99845 * 19 16 14 38 38 H 1.09000 * 109.47200 * 304.99904 * 19 16 14 39 39 H 1.08005 * 119.99601 * 0.02562 * 21 20 19 40 40 H 1.07999 * 120.00287 * 179.77050 * 22 21 20 41 41 H 1.07996 * 120.00396 * 179.97438 * 23 22 21 42 42 H 1.08009 * 119.99396 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47152 * 269.72462 * 26 25 20 44 44 H 1.09001 * 109.46980 * 149.72562 * 26 25 20 45 45 H 1.09004 * 109.47113 * 29.72543 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8800 -1.3811 10 1 6.5989 1.5442 -0.1931 11 1 6.4962 -0.5191 -1.4626 12 1 6.4000 1.6155 -2.6092 13 7 1.6525 2.0976 1.2517 14 6 0.4352 2.6645 1.3668 15 8 -0.3392 2.6328 0.4340 16 6 0.0368 3.3388 2.6543 17 1 0.7281 4.1543 2.8665 18 6 0.0807 2.3225 3.7972 19 6 -1.3825 3.8944 2.5210 20 6 -1.7355 4.6739 3.7615 21 6 -2.4223 4.0595 4.7920 22 6 -2.7506 4.7759 5.9275 23 6 -2.3882 6.1059 6.0347 24 6 -1.6969 6.7186 5.0066 25 6 -1.3681 6.0019 3.8710 26 6 -0.6152 6.6704 2.7497 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.8293 -0.0605 -2.9502 33 1 2.2720 2.1232 1.9977 34 1 -0.6107 1.5070 3.5850 35 1 1.0917 1.9263 3.8923 36 1 -0.2079 2.8102 4.7283 37 1 -2.0853 3.0703 2.3976 38 1 -1.4358 4.5505 1.6522 39 1 -2.7057 3.0207 4.7082 40 1 -3.2904 4.2969 6.7310 41 1 -2.6450 6.6658 6.9217 42 1 -1.4141 7.7577 5.0901 43 1 0.4564 6.5542 2.9116 44 1 -0.8661 7.7309 2.7252 45 1 -0.8915 6.2097 1.8012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599760070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:52 Heat of formation + Delta-G solvation = -42.096519 kcal Electronic energy + Delta-G solvation = -23304.303441 eV Core-core repulsion = 20092.466612 eV Total energy + Delta-G solvation = -3211.836830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.99068 -38.90842 -35.40089 -34.47499 -32.80581 -32.33145 -31.19388 -30.30236 -27.33848 -26.85038 -26.42193 -23.67098 -22.68499 -22.00145 -20.66021 -19.65721 -19.10781 -17.13383 -16.41286 -15.88442 -15.62038 -15.34346 -14.83061 -14.67158 -14.47586 -13.85781 -13.50111 -13.25389 -13.16825 -12.88740 -12.63618 -12.58365 -12.29649 -12.06101 -11.98170 -11.73730 -11.47503 -11.25851 -11.17542 -10.99109 -10.90036 -10.83110 -10.81501 -10.59786 -10.28952 -10.14266 -9.60745 -9.02342 -8.89142 -8.81652 -8.55714 -8.47512 -7.76817 -6.11542 -4.20719 1.30496 1.33262 3.23505 3.31591 3.34079 3.47933 3.68130 4.14493 4.39122 4.76480 4.80867 4.93494 4.98396 5.07464 5.16360 5.20008 5.27834 5.34836 5.44418 5.59398 5.64545 5.73615 5.79959 5.89762 5.90181 5.97162 6.10155 6.11595 6.30281 6.39988 6.41027 6.43768 6.46221 6.48463 6.68572 6.71350 6.98135 7.06365 7.22215 7.39729 7.50741 7.64116 7.76129 7.92698 8.20332 8.72479 8.80355 9.19919 9.47256 10.93748 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026097 B = 0.003527 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.670463 B = 7937.662409 C = 8375.978810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.708 5.708 14 C 0.505 3.495 15 O -0.550 6.550 16 C -0.106 4.106 17 H 0.089 0.911 18 C -0.143 4.143 19 C -0.063 4.063 20 C -0.073 4.073 21 C -0.111 4.111 22 C -0.127 4.127 23 C -0.126 4.126 24 C -0.121 4.121 25 C -0.081 4.081 26 C -0.122 4.122 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.387 0.613 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.886 8.782 14.910 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.430 6.430 16 C -0.128 4.128 17 H 0.108 0.892 18 C -0.200 4.200 19 C -0.101 4.101 20 C -0.073 4.073 21 C -0.129 4.129 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.081 4.081 26 C -0.178 4.178 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.219 0.781 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.396 8.643 14.022 18.963 hybrid contribution 1.324 -0.062 0.357 1.373 sum -8.072 8.581 14.379 18.589 Atomic orbital electron populations 1.21834 0.98375 0.97923 1.01253 1.21925 0.92598 0.99888 1.02160 1.18761 0.94093 0.89159 0.81186 0.93402 1.21284 0.90836 1.38806 1.06207 0.92115 1.24886 0.98537 0.94860 0.95428 1.69904 1.34983 1.37743 1.09326 0.86423 0.84997 0.77758 0.78095 1.19764 1.20902 1.20903 1.46488 1.14716 1.55969 1.18354 1.20303 0.82678 0.79281 0.88774 1.90657 1.51492 1.60102 1.40706 1.21264 0.97754 0.98968 0.94781 0.89238 1.21805 1.02480 0.98472 0.97282 1.20436 0.95538 0.99392 0.94703 1.19851 0.97670 0.93588 0.96220 1.21083 0.98681 0.99782 0.93402 1.21092 1.00805 0.94606 0.98044 1.21069 0.99396 0.95196 0.98753 1.21002 0.99556 0.99688 0.93683 1.19823 0.98657 0.93698 0.95945 1.20912 0.99868 1.00062 0.97004 0.94206 0.93204 0.95988 0.88398 0.95141 0.92659 0.78081 0.92258 0.92099 0.91853 0.90507 0.89747 0.86077 0.86406 0.86492 0.86368 0.90975 0.91809 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.73 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.57 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.66 11.29 55.43 0.63 -24.04 16 9 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.71 -14.39 4.91 -54.93 -0.27 -14.66 16 14 C 0.50 9.64 5.72 -10.98 -0.06 9.57 16 15 O -0.55 -12.42 13.06 5.56 0.07 -12.34 16 16 C -0.11 -1.51 2.72 -91.77 -0.25 -1.76 16 17 H 0.09 1.19 7.94 -51.93 -0.41 0.78 16 18 C -0.14 -1.78 8.73 37.16 0.32 -1.45 16 19 C -0.06 -0.86 3.67 -27.89 -0.10 -0.96 16 20 C -0.07 -0.88 4.57 -104.63 -0.48 -1.36 16 21 C -0.11 -1.22 8.33 -39.59 -0.33 -1.55 16 22 C -0.13 -1.26 10.05 -39.58 -0.40 -1.65 16 23 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 24 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 25 C -0.08 -0.93 5.88 -104.62 -0.62 -1.54 16 26 C -0.12 -1.28 9.41 36.01 0.34 -0.94 16 27 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 28 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 31 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.39 6.95 7.96 -40.82 -0.32 6.63 16 34 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.06 0.74 7.56 -51.93 -0.39 0.34 16 36 H 0.06 0.70 6.50 -51.93 -0.34 0.37 16 37 H 0.08 1.09 8.05 -51.92 -0.42 0.67 16 38 H 0.08 1.23 5.97 -51.93 -0.31 0.92 16 39 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 45 H 0.07 0.86 6.02 -51.93 -0.31 0.55 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -29.58 355.14 -9.23 -38.81 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.25 Total: 8.24 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -2.73 Total: -16.88 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.36 Total: -38.70 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.34 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.58 -9.23 -38.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599760070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.291 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds