Wall clock time and date at job start Tue Mar 31 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47260 * 2 1 4 4 H 1.09003 * 109.46669 * 304.99873 * 3 2 1 5 5 C 1.50700 * 109.47243 * 185.00225 * 3 2 1 6 6 H 1.07998 * 119.99515 * 240.00060 * 5 3 2 7 7 C 1.37875 * 119.99974 * 59.99347 * 5 3 2 8 8 N 1.31508 * 120.00231 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99647 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47514 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47046 * 120.00361 * 9 7 5 12 12 H 1.48498 * 109.47308 * 239.99867 * 9 7 5 13 13 N 1.46493 * 109.47354 * 64.99597 * 3 2 1 14 14 C 1.34772 * 120.00148 * 275.00358 * 13 3 2 15 15 O 1.21278 * 120.00394 * 359.97438 * 14 13 3 16 16 C 1.50707 * 119.99942 * 180.02562 * 14 13 3 17 17 H 1.08995 * 109.47292 * 59.99855 * 16 14 13 18 18 C 1.53002 * 109.47078 * 299.99787 * 16 14 13 19 19 C 1.52999 * 109.47105 * 180.02562 * 16 14 13 20 20 C 1.50695 * 109.47313 * 184.99600 * 19 16 14 21 21 C 1.38253 * 120.00596 * 265.23416 * 20 19 16 22 22 C 1.38210 * 120.00401 * 180.25469 * 21 20 19 23 23 C 1.38260 * 120.00052 * 359.78440 * 22 21 20 24 24 C 1.38216 * 119.99407 * 359.96186 * 23 22 21 25 25 C 1.38218 * 119.99818 * 84.99738 * 20 19 16 26 26 C 1.50703 * 119.99968 * 0.02562 * 25 20 19 27 27 H 1.09005 * 109.46797 * 300.00463 * 1 2 3 28 28 H 1.08996 * 109.46968 * 60.00216 * 1 2 3 29 29 H 1.08993 * 109.47183 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47516 * 239.99617 * 2 1 3 31 31 H 1.09008 * 109.47190 * 119.99534 * 2 1 3 32 32 H 0.97000 * 120.00095 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99936 * 94.99931 * 13 3 2 34 34 H 1.09009 * 109.47081 * 300.00023 * 18 16 14 35 35 H 1.09003 * 109.47067 * 59.99956 * 18 16 14 36 36 H 1.08995 * 109.46911 * 180.02562 * 18 16 14 37 37 H 1.09007 * 109.47248 * 64.99845 * 19 16 14 38 38 H 1.09000 * 109.47200 * 304.99904 * 19 16 14 39 39 H 1.08005 * 119.99601 * 0.02562 * 21 20 19 40 40 H 1.07999 * 120.00287 * 179.77050 * 22 21 20 41 41 H 1.07996 * 120.00396 * 179.97438 * 23 22 21 42 42 H 1.08009 * 119.99396 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47152 * 269.72462 * 26 25 20 44 44 H 1.09001 * 109.46980 * 149.72562 * 26 25 20 45 45 H 1.09004 * 109.47113 * 29.72543 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8800 -1.3811 10 1 6.5989 1.5442 -0.1931 11 1 6.4962 -0.5191 -1.4626 12 1 6.4000 1.6155 -2.6092 13 7 1.6525 2.0976 1.2517 14 6 0.4352 2.6645 1.3668 15 8 -0.3392 2.6328 0.4340 16 6 0.0368 3.3388 2.6543 17 1 0.7281 4.1543 2.8665 18 6 0.0807 2.3225 3.7972 19 6 -1.3825 3.8944 2.5210 20 6 -1.7355 4.6739 3.7615 21 6 -2.4223 4.0595 4.7920 22 6 -2.7506 4.7759 5.9275 23 6 -2.3882 6.1059 6.0347 24 6 -1.6969 6.7186 5.0066 25 6 -1.3681 6.0019 3.8710 26 6 -0.6152 6.6704 2.7497 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.8293 -0.0605 -2.9502 33 1 2.2720 2.1232 1.9977 34 1 -0.6107 1.5070 3.5850 35 1 1.0917 1.9263 3.8923 36 1 -0.2079 2.8102 4.7283 37 1 -2.0853 3.0703 2.3976 38 1 -1.4358 4.5505 1.6522 39 1 -2.7057 3.0207 4.7082 40 1 -3.2904 4.2969 6.7310 41 1 -2.6450 6.6658 6.9217 42 1 -1.4141 7.7577 5.0901 43 1 0.4564 6.5542 2.9116 44 1 -0.8661 7.7309 2.7252 45 1 -0.8915 6.2097 1.8012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599760070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:52 Heat of formation + Delta-G solvation = -57.506120 kcal Electronic energy + Delta-G solvation = -23304.971652 eV Core-core repulsion = 20092.466612 eV Total energy + Delta-G solvation = -3212.505040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16600 -40.17312 -37.08945 -35.79573 -34.29267 -33.58281 -32.79623 -31.50601 -28.92252 -28.08199 -27.34505 -25.33090 -24.23010 -22.84828 -21.93951 -21.20693 -20.63148 -18.80567 -17.68029 -17.19958 -16.94363 -16.71095 -16.20582 -16.10874 -15.69479 -15.16869 -14.73120 -14.60829 -14.46655 -13.96818 -13.91539 -13.73301 -13.45580 -13.37017 -13.20164 -13.06432 -13.03246 -12.87220 -12.78273 -12.68445 -12.16719 -12.12884 -12.03516 -11.94942 -11.70947 -11.58111 -11.56486 -11.02275 -10.58888 -10.40853 -9.61841 -9.57380 -9.40575 -8.15530 -6.32695 0.49897 0.54940 1.43568 1.44963 1.56550 1.92617 2.36963 2.67596 2.93909 3.13864 3.79337 3.89526 3.97857 4.09804 4.12032 4.23799 4.31174 4.46576 4.50082 4.51528 4.58380 4.62045 4.75984 4.78125 4.82831 4.91049 4.92712 4.97941 5.02003 5.08180 5.15021 5.25070 5.28200 5.30767 5.42304 5.45693 5.57842 5.66133 5.66965 5.68901 5.81550 5.85929 5.95621 6.18947 6.20582 6.76441 7.05014 7.35009 7.64658 8.89868 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026097 B = 0.003527 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.670463 B = 7937.662409 C = 8375.978810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.705 5.705 14 C 0.502 3.498 15 O -0.588 6.588 16 C -0.092 4.092 17 H 0.104 0.896 18 C -0.137 4.137 19 C -0.055 4.055 20 C -0.088 4.088 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.094 4.094 26 C -0.121 4.121 27 H 0.045 0.955 28 H 0.024 0.976 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 9.540 17.825 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.354 5.354 14 C 0.289 3.711 15 O -0.470 6.470 16 C -0.113 4.113 17 H 0.122 0.878 18 C -0.194 4.194 19 C -0.093 4.093 20 C -0.088 4.088 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.094 4.094 26 C -0.178 4.178 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.145 0.855 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.961 9.415 16.979 21.383 hybrid contribution 1.110 -0.243 -0.541 1.259 sum -7.851 9.171 16.438 20.395 Atomic orbital electron populations 1.21670 0.96991 0.99024 1.00288 1.21771 0.93737 0.99241 1.01152 1.18335 0.93503 0.89139 0.81559 0.98580 1.21622 0.91562 1.38713 1.06595 0.91157 1.25764 1.03233 0.94443 0.95075 1.70056 1.36944 1.38483 1.09864 0.85344 0.79274 0.77804 0.78188 1.18446 1.20488 1.21057 1.46272 1.15685 1.56086 1.17336 1.21169 0.81568 0.78352 0.90012 1.90643 1.52448 1.61288 1.42593 1.21202 0.98407 0.99323 0.92390 0.87845 1.21783 1.02825 0.97800 0.97011 1.20285 0.94782 0.98877 0.95327 1.19711 0.99328 0.93949 0.95815 1.21225 0.98617 1.00330 0.93584 1.21395 1.00433 0.94846 0.98095 1.21434 0.98293 0.95287 0.99315 1.21270 0.99327 1.00599 0.93285 1.19969 0.99110 0.93649 0.96696 1.20904 0.99920 1.00875 0.96088 0.93554 0.95719 0.93727 0.91189 0.94125 0.92663 0.76425 0.92732 0.91484 0.89914 0.91620 0.91521 0.85488 0.84160 0.83968 0.84531 0.90814 0.90264 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.52 71.98 0.61 -4.94 16 2 C -0.12 -5.95 5.45 30.60 0.17 -5.78 16 3 C 0.28 14.28 2.24 44.25 0.10 14.38 16 4 H 0.00 -0.23 7.58 -2.39 -0.02 -0.24 16 5 C -0.55 -28.94 8.73 25.60 0.22 -28.72 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.01 0.80 5.29 84.66 0.45 1.25 16 8 N -0.91 -52.54 11.29 21.45 0.24 -52.29 16 9 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 13 N -0.71 -28.89 4.91 -446.10 -2.19 -31.08 16 14 C 0.50 19.45 5.72 87.66 0.50 19.95 16 15 O -0.59 -27.65 13.06 -3.02 -0.04 -27.68 16 16 C -0.09 -2.56 2.72 -11.54 -0.03 -2.60 16 17 H 0.10 2.63 7.94 -2.39 -0.02 2.61 16 18 C -0.14 -3.16 8.73 71.98 0.63 -2.53 16 19 C -0.06 -1.51 3.67 29.85 0.11 -1.40 16 20 C -0.09 -2.02 4.57 -19.87 -0.09 -2.11 16 21 C -0.12 -2.39 8.33 22.27 0.19 -2.21 16 22 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 23 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 24 C -0.13 -2.26 9.70 22.27 0.22 -2.05 16 25 C -0.09 -2.01 5.88 -19.87 -0.12 -2.13 16 26 C -0.12 -2.46 9.41 71.24 0.67 -1.79 16 27 H 0.05 2.01 5.65 -2.38 -0.01 2.00 16 28 H 0.02 1.20 7.85 -2.39 -0.02 1.18 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 3.89 5.95 -2.39 -0.01 3.88 16 31 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.40 14.08 7.96 -92.71 -0.74 13.34 16 34 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.07 1.47 7.56 -2.39 -0.02 1.45 16 36 H 0.08 1.62 6.50 -2.39 -0.02 1.61 16 37 H 0.07 1.90 8.05 -2.38 -0.02 1.88 16 38 H 0.07 2.04 5.97 -2.39 -0.01 2.03 16 39 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 41 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 45 H 0.06 1.37 6.02 -2.38 -0.01 1.36 16 Total: -1.00 -65.46 355.14 4.34 -61.12 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.23 Total: 30.18 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 4.07 Total: -24.39 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -1.95 Total: -83.37 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.04 Total: -27.68 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -65.46 4.34 -61.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599760070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.611 kcal (2) G-P(sol) polarization free energy of solvation -65.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds