Wall clock time and date at job start Tue Mar 31 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47485 * 2 1 4 4 N 1.46501 * 109.46991 * 179.97438 * 3 2 1 5 5 C 1.46496 * 120.00003 * 269.99405 * 4 3 2 6 6 C 1.52999 * 109.47292 * 263.76293 * 5 4 3 7 7 C 1.52994 * 109.47019 * 65.00214 * 6 5 4 8 8 C 1.53006 * 109.46872 * 185.00176 * 6 5 4 9 9 C 1.34780 * 119.99862 * 90.00036 * 4 3 2 10 10 O 1.21614 * 120.00179 * 4.80678 * 9 4 3 11 11 C 1.47437 * 119.99911 * 184.80876 * 9 4 3 12 12 C 1.39223 * 120.28270 * 54.60375 * 11 9 4 13 13 C 1.38224 * 120.09113 * 180.27794 * 12 11 9 14 14 C 1.38819 * 120.67567 * 359.70205 * 13 12 11 15 15 C 1.37601 * 120.57234 * 359.97438 * 14 13 12 16 16 C 1.40709 * 119.88010 * 0.02562 * 15 14 13 17 17 C 1.40886 * 120.32785 * 179.97438 * 16 15 14 18 18 H 1.07992 * 119.99996 * 211.48058 * 17 16 15 19 19 C 1.40276 * 119.99823 * 31.49000 * 17 16 15 20 20 N 1.30628 * 120.00161 * 191.24616 * 19 17 16 21 21 Si 1.86800 * 119.99923 * 11.23906 * 19 17 16 22 22 H 1.48495 * 109.47219 * 266.87357 * 21 19 17 23 23 H 1.48497 * 109.47374 * 26.87800 * 21 19 17 24 24 H 1.48506 * 109.46860 * 146.87434 * 21 19 17 25 25 H 1.08992 * 109.47022 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47058 * 300.00473 * 1 2 3 27 27 H 1.08999 * 109.46489 * 59.99831 * 1 2 3 28 28 H 1.09000 * 109.47058 * 239.99527 * 2 1 3 29 29 H 1.09004 * 109.47310 * 119.99852 * 2 1 3 30 30 H 1.09000 * 109.47359 * 59.99711 * 3 2 1 31 31 H 1.09004 * 109.46696 * 299.99654 * 3 2 1 32 32 H 1.08997 * 109.47025 * 23.76701 * 5 4 3 33 33 H 1.09001 * 109.46697 * 143.76556 * 5 4 3 34 34 H 1.09001 * 109.47287 * 304.99789 * 6 5 4 35 35 H 1.08999 * 109.47204 * 299.99616 * 7 6 5 36 36 H 1.09001 * 109.47438 * 59.99667 * 7 6 5 37 37 H 1.08999 * 109.47193 * 180.02562 * 7 6 5 38 38 H 1.08994 * 109.47268 * 60.00407 * 8 6 5 39 39 H 1.08999 * 109.46774 * 180.02562 * 8 6 5 40 40 H 1.08995 * 109.47012 * 299.99489 * 8 6 5 41 41 H 1.07999 * 119.95690 * 0.02562 * 12 11 9 42 42 H 1.07997 * 119.65734 * 179.72369 * 13 12 11 43 43 H 1.08005 * 119.71544 * 180.02562 * 14 13 12 44 44 H 1.08000 * 120.05862 * 180.02562 * 15 14 13 45 45 H 0.96992 * 120.00260 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.2370 1.4426 1.2696 6 6 4.6278 2.8766 1.6328 7 6 3.3642 3.6987 1.8942 8 6 5.4981 2.8649 2.8911 9 6 4.1795 1.4421 -1.1663 10 8 3.5751 1.5302 -2.2180 11 6 5.6499 1.3349 -1.1680 12 6 6.2776 0.2782 -0.5139 13 6 7.6566 0.1848 -0.5131 14 6 8.4312 1.1341 -1.1657 15 6 7.8395 2.1861 -1.8264 16 6 6.4375 2.3044 -1.8424 17 6 5.8218 3.3780 -2.5155 18 1 4.8868 3.7781 -2.1522 19 6 6.4231 3.9272 -3.6576 20 7 5.9790 5.0513 -4.1532 21 14 7.8591 3.0510 -4.4699 22 1 9.1347 3.5835 -3.9275 23 1 7.7722 1.5950 -4.1915 24 1 7.8117 3.2781 -5.9368 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6768 1.9562 -0.8901 32 1 3.6038 1.0287 2.0543 33 1 5.1366 0.8350 1.1703 34 1 5.1863 3.3207 0.8088 35 1 2.7442 3.7071 0.9978 36 1 2.8057 3.2545 2.7181 37 1 3.6425 4.7204 2.1525 38 1 6.3982 2.2792 2.7049 39 1 5.7761 3.8865 3.1501 40 1 4.9396 2.4208 3.7150 41 1 5.6863 -0.4673 -0.0031 42 1 8.1364 -0.6354 0.0002 43 1 9.5076 1.0457 -1.1555 44 1 8.4501 2.9197 -2.3317 45 1 6.3950 5.4312 -4.9427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600993044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:12 Heat of formation + Delta-G solvation = -34.929982 kcal Electronic energy + Delta-G solvation = -24319.629300 eV Core-core repulsion = 21108.103235 eV Total energy + Delta-G solvation = -3211.526065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.60963 -37.35259 -36.20298 -34.48859 -33.69411 -32.25349 -30.56939 -30.07731 -27.07724 -26.53590 -25.69489 -24.81221 -22.32612 -21.61697 -20.70711 -20.17902 -18.42183 -17.45282 -16.60257 -15.97204 -15.47854 -14.77850 -14.60034 -14.40394 -14.21326 -13.87756 -13.76570 -13.19365 -13.01523 -12.67341 -12.53494 -12.34028 -12.12937 -12.03551 -11.85938 -11.81665 -11.65327 -11.35644 -11.19059 -10.94146 -10.93100 -10.86033 -10.66474 -10.42915 -10.34768 -10.20653 -9.96119 -9.74950 -9.25567 -8.74506 -8.05417 -7.69759 -7.66198 -6.97904 -4.53602 2.26186 2.59292 3.08039 3.19318 3.30822 3.62943 3.80841 3.96048 4.48311 5.07190 5.12518 5.18536 5.26815 5.32694 5.34958 5.44171 5.55144 5.66967 5.80000 5.82531 5.85437 5.87771 5.93219 5.97698 6.02711 6.04942 6.11292 6.15063 6.20810 6.28468 6.38762 6.40611 6.45540 6.52956 6.58277 6.71655 6.78920 7.07748 7.15790 7.28321 7.44464 7.57186 7.73609 7.99039 8.15562 8.31747 8.56110 8.71605 9.18503 10.03450 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.006314 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.141753 B = 4433.484501 C = 4878.226455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.115 3.885 4 N -0.620 5.620 5 C 0.115 3.885 6 C -0.117 4.117 7 C -0.143 4.143 8 C -0.140 4.140 9 C 0.584 3.416 10 O -0.533 6.533 11 C -0.233 4.233 12 C -0.048 4.048 13 C -0.251 4.251 14 C -0.065 4.065 15 C -0.234 4.234 16 C 0.121 3.879 17 C -0.413 4.413 18 H 0.091 0.909 19 C 0.083 3.917 20 N -0.798 5.798 21 Si 0.915 3.085 22 H -0.270 1.270 23 H -0.240 1.240 24 H -0.291 1.291 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 -5.519 11.026 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C -0.008 4.008 4 N -0.353 5.353 5 C -0.008 4.008 6 C -0.136 4.136 7 C -0.200 4.200 8 C -0.198 4.198 9 C 0.375 3.625 10 O -0.409 6.409 11 C -0.238 4.238 12 C -0.066 4.066 13 C -0.271 4.271 14 C -0.083 4.083 15 C -0.252 4.252 16 C 0.117 3.883 17 C -0.440 4.440 18 H 0.109 0.891 19 C -0.138 4.138 20 N -0.421 5.421 21 Si 0.742 3.258 22 H -0.197 1.197 23 H -0.163 1.163 24 H -0.218 1.218 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.120 0.880 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.612 -5.221 10.251 12.058 hybrid contribution 0.639 -0.154 -0.345 0.743 sum -2.973 -5.375 9.906 11.656 Atomic orbital electron populations 1.21681 0.95657 1.01414 1.01739 1.21907 0.95630 0.98076 1.02194 1.21423 0.80646 0.96092 1.02624 1.47956 1.05416 1.75706 1.06261 1.21728 0.97388 0.96745 0.84979 1.21551 0.96773 0.96459 0.98850 1.21838 0.97712 0.99455 1.01024 1.21728 0.99626 1.01647 0.96826 1.18409 0.87738 0.73926 0.82384 1.90704 1.70235 1.48692 1.31279 1.19371 0.90796 1.00535 1.13081 1.20632 0.94290 0.95892 0.95813 1.20242 0.93268 1.02707 1.10858 1.20674 0.97690 0.93990 0.95976 1.21003 0.94600 1.01426 1.08217 1.17439 0.90693 0.90347 0.89816 1.19501 1.07083 1.09804 1.07620 0.89059 1.26248 0.97276 0.93362 0.96866 1.69552 1.37839 1.15136 1.19597 0.86285 0.79852 0.82967 0.76714 1.19660 1.16313 1.21842 0.92895 0.92931 0.92525 0.91662 0.92332 0.91250 0.90179 0.91635 0.89356 0.89753 0.92447 0.93466 0.93124 0.92354 0.92825 0.93282 0.88480 0.88582 0.88682 0.87989 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.14 -1.87 6.26 -26.73 -0.17 -2.04 16 3 C 0.12 1.77 4.53 -4.04 -0.02 1.76 16 4 N -0.62 -11.02 2.20 -174.95 -0.38 -11.40 16 5 C 0.11 1.72 4.59 -4.04 -0.02 1.70 16 6 C -0.12 -1.76 3.06 -90.62 -0.28 -2.04 16 7 C -0.14 -1.96 8.35 37.15 0.31 -1.65 16 8 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 9 C 0.58 13.27 6.27 -12.51 -0.08 13.19 16 10 O -0.53 -14.16 15.80 5.27 0.08 -14.07 16 11 C -0.23 -5.39 4.76 -104.37 -0.50 -5.89 16 12 C -0.05 -0.96 7.61 -39.22 -0.30 -1.25 16 13 C -0.25 -4.90 10.03 -39.37 -0.39 -5.29 16 14 C -0.06 -1.34 10.01 -39.60 -0.40 -1.73 16 15 C -0.23 -5.48 6.94 -38.88 -0.27 -5.74 16 16 C 0.12 3.07 5.16 -106.54 -0.55 2.52 16 17 C -0.41 -11.41 8.49 -37.81 -0.32 -11.74 16 18 H 0.09 2.75 7.45 -52.49 -0.39 2.36 16 19 C 0.08 2.22 5.48 -17.30 -0.09 2.12 16 20 N -0.80 -21.66 13.92 55.56 0.77 -20.89 16 21 Si 0.91 21.20 24.39 -169.99 -4.15 17.05 16 22 H -0.27 -5.91 6.72 56.52 0.38 -5.53 16 23 H -0.24 -5.75 6.58 56.52 0.37 -5.38 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.90 6.70 -51.93 -0.35 0.55 16 31 H 0.08 1.42 7.36 -51.93 -0.38 1.04 16 32 H 0.07 0.81 8.02 -51.93 -0.42 0.39 16 33 H 0.09 1.38 4.47 -51.93 -0.23 1.15 16 34 H 0.08 1.62 7.88 -51.93 -0.41 1.21 16 35 H 0.06 0.87 6.38 -51.93 -0.33 0.54 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 1.71 7.25 -52.49 -0.38 1.32 16 42 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 44 H 0.10 2.38 4.39 -52.49 -0.23 2.15 16 45 H 0.29 7.03 8.29 -40.82 -0.34 6.70 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -29.51 353.10 -8.10 -37.61 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.38 Total: 5.15 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -2.36 Total: -18.77 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.39 Total: -32.29 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.08 Total: -14.07 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.15 Total: 17.05 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.51 -8.10 -37.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600993044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.680 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds