Wall clock time and date at job start Tue Mar 31 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47485 * 2 1 4 4 N 1.46501 * 109.46991 * 179.97438 * 3 2 1 5 5 C 1.46496 * 120.00003 * 269.99405 * 4 3 2 6 6 C 1.52999 * 109.47292 * 263.76293 * 5 4 3 7 7 C 1.52994 * 109.47019 * 65.00214 * 6 5 4 8 8 C 1.53006 * 109.46872 * 185.00176 * 6 5 4 9 9 C 1.34780 * 119.99862 * 90.00036 * 4 3 2 10 10 O 1.21614 * 120.00179 * 4.80678 * 9 4 3 11 11 C 1.47437 * 119.99911 * 184.80876 * 9 4 3 12 12 C 1.39223 * 120.28270 * 54.60375 * 11 9 4 13 13 C 1.38224 * 120.09113 * 180.27794 * 12 11 9 14 14 C 1.38819 * 120.67567 * 359.70205 * 13 12 11 15 15 C 1.37601 * 120.57234 * 359.97438 * 14 13 12 16 16 C 1.40709 * 119.88010 * 0.02562 * 15 14 13 17 17 C 1.40886 * 120.32785 * 179.97438 * 16 15 14 18 18 H 1.07992 * 119.99996 * 211.48058 * 17 16 15 19 19 C 1.40276 * 119.99823 * 31.49000 * 17 16 15 20 20 N 1.30628 * 120.00161 * 191.24616 * 19 17 16 21 21 Si 1.86800 * 119.99923 * 11.23906 * 19 17 16 22 22 H 1.48495 * 109.47219 * 266.87357 * 21 19 17 23 23 H 1.48497 * 109.47374 * 26.87800 * 21 19 17 24 24 H 1.48506 * 109.46860 * 146.87434 * 21 19 17 25 25 H 1.08992 * 109.47022 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47058 * 300.00473 * 1 2 3 27 27 H 1.08999 * 109.46489 * 59.99831 * 1 2 3 28 28 H 1.09000 * 109.47058 * 239.99527 * 2 1 3 29 29 H 1.09004 * 109.47310 * 119.99852 * 2 1 3 30 30 H 1.09000 * 109.47359 * 59.99711 * 3 2 1 31 31 H 1.09004 * 109.46696 * 299.99654 * 3 2 1 32 32 H 1.08997 * 109.47025 * 23.76701 * 5 4 3 33 33 H 1.09001 * 109.46697 * 143.76556 * 5 4 3 34 34 H 1.09001 * 109.47287 * 304.99789 * 6 5 4 35 35 H 1.08999 * 109.47204 * 299.99616 * 7 6 5 36 36 H 1.09001 * 109.47438 * 59.99667 * 7 6 5 37 37 H 1.08999 * 109.47193 * 180.02562 * 7 6 5 38 38 H 1.08994 * 109.47268 * 60.00407 * 8 6 5 39 39 H 1.08999 * 109.46774 * 180.02562 * 8 6 5 40 40 H 1.08995 * 109.47012 * 299.99489 * 8 6 5 41 41 H 1.07999 * 119.95690 * 0.02562 * 12 11 9 42 42 H 1.07997 * 119.65734 * 179.72369 * 13 12 11 43 43 H 1.08005 * 119.71544 * 180.02562 * 14 13 12 44 44 H 1.08000 * 120.05862 * 180.02562 * 15 14 13 45 45 H 0.96992 * 120.00260 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.2370 1.4426 1.2696 6 6 4.6278 2.8766 1.6328 7 6 3.3642 3.6987 1.8942 8 6 5.4981 2.8649 2.8911 9 6 4.1795 1.4421 -1.1663 10 8 3.5751 1.5302 -2.2180 11 6 5.6499 1.3349 -1.1680 12 6 6.2776 0.2782 -0.5139 13 6 7.6566 0.1848 -0.5131 14 6 8.4312 1.1341 -1.1657 15 6 7.8395 2.1861 -1.8264 16 6 6.4375 2.3044 -1.8424 17 6 5.8218 3.3780 -2.5155 18 1 4.8868 3.7781 -2.1522 19 6 6.4231 3.9272 -3.6576 20 7 5.9790 5.0513 -4.1532 21 14 7.8591 3.0510 -4.4699 22 1 9.1347 3.5835 -3.9275 23 1 7.7722 1.5950 -4.1915 24 1 7.8117 3.2781 -5.9368 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6768 1.9562 -0.8901 32 1 3.6038 1.0287 2.0543 33 1 5.1366 0.8350 1.1703 34 1 5.1863 3.3207 0.8088 35 1 2.7442 3.7071 0.9978 36 1 2.8057 3.2545 2.7181 37 1 3.6425 4.7204 2.1525 38 1 6.3982 2.2792 2.7049 39 1 5.7761 3.8865 3.1501 40 1 4.9396 2.4208 3.7150 41 1 5.6863 -0.4673 -0.0031 42 1 8.1364 -0.6354 0.0002 43 1 9.5076 1.0457 -1.1555 44 1 8.4501 2.9197 -2.3317 45 1 6.3950 5.4312 -4.9427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600993044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:11 Heat of formation + Delta-G solvation = -51.617964 kcal Electronic energy + Delta-G solvation = -24320.352946 eV Core-core repulsion = 21108.103235 eV Total energy + Delta-G solvation = -3212.249710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.24342 -39.03574 -37.76516 -35.69882 -35.59221 -33.60605 -32.41170 -31.71146 -28.26319 -27.68577 -27.36675 -26.36750 -23.86647 -23.21078 -22.16679 -21.45960 -20.02942 -19.34073 -18.19640 -17.50521 -17.19058 -16.32128 -16.05109 -15.87977 -15.65139 -15.41178 -15.22192 -14.63868 -14.47067 -14.36237 -14.00251 -13.88682 -13.64445 -13.36847 -13.11983 -13.00384 -12.89470 -12.76930 -12.66237 -12.55842 -12.34833 -12.12976 -12.08187 -11.86046 -11.71917 -11.63478 -11.55263 -11.48885 -11.07527 -10.52817 -9.63942 -9.49428 -9.31211 -8.92916 -6.54374 0.50589 0.81435 1.19874 1.35439 1.44174 1.96587 2.06920 2.28134 2.62123 3.45829 3.80920 3.96326 4.03251 4.13514 4.16632 4.21564 4.29041 4.38976 4.40690 4.53891 4.59807 4.70398 4.73210 4.75918 4.80081 4.83852 4.89053 4.96633 5.00001 5.04323 5.06125 5.14188 5.24226 5.25180 5.30995 5.37043 5.43529 5.45657 5.50565 5.71763 5.75444 5.88792 5.93389 6.16029 6.33951 6.53741 6.72073 6.73766 7.47169 8.16257 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.006314 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.141753 B = 4433.484501 C = 4878.226455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.112 3.888 4 N -0.609 5.609 5 C 0.111 3.889 6 C -0.116 4.116 7 C -0.140 4.140 8 C -0.132 4.132 9 C 0.574 3.426 10 O -0.590 6.590 11 C -0.242 4.242 12 C -0.048 4.048 13 C -0.222 4.222 14 C -0.065 4.065 15 C -0.249 4.249 16 C 0.102 3.898 17 C -0.453 4.453 18 H 0.037 0.963 19 C 0.038 3.962 20 N -0.852 5.852 21 Si 0.972 3.028 22 H -0.245 1.245 23 H -0.251 1.251 24 H -0.283 1.283 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.028 0.972 35 H 0.032 0.968 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.131 0.869 42 H 0.144 0.856 43 H 0.136 0.864 44 H 0.100 0.900 45 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.728 -8.916 14.709 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.010 4.010 4 N -0.340 5.340 5 C -0.011 4.011 6 C -0.136 4.136 7 C -0.197 4.197 8 C -0.190 4.190 9 C 0.366 3.634 10 O -0.471 6.471 11 C -0.247 4.247 12 C -0.066 4.066 13 C -0.240 4.240 14 C -0.083 4.083 15 C -0.268 4.268 16 C 0.098 3.902 17 C -0.483 4.483 18 H 0.055 0.945 19 C -0.176 4.176 20 N -0.478 5.478 21 Si 0.795 3.205 22 H -0.170 1.170 23 H -0.175 1.175 24 H -0.210 1.210 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.149 0.851 42 H 0.162 0.838 43 H 0.154 0.846 44 H 0.118 0.882 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.120 -8.620 14.003 16.580 hybrid contribution 0.143 0.706 -1.213 1.411 sum -1.976 -7.914 12.790 15.170 Atomic orbital electron populations 1.21660 0.93597 1.02614 1.02176 1.21826 0.97366 0.95902 1.01798 1.21621 0.79147 0.97885 1.02389 1.47958 1.06550 1.73530 1.05974 1.22005 0.97984 0.96754 0.84321 1.21497 0.97260 0.96406 0.98443 1.21812 0.97067 0.99707 1.01092 1.21668 0.99263 1.02023 0.96063 1.18607 0.88071 0.73661 0.83066 1.90665 1.71184 1.51545 1.33662 1.19679 0.91223 1.01004 1.12772 1.21016 0.95333 0.95159 0.95137 1.20869 0.92778 1.02476 1.07904 1.21161 1.00049 0.92719 0.94372 1.21130 0.93568 1.02844 1.09229 1.17642 0.92176 0.90293 0.90071 1.19286 1.06167 1.12702 1.10115 0.94478 1.27008 0.99770 0.93910 0.96888 1.69606 1.40269 1.16872 1.21066 0.85433 0.77916 0.80910 0.76205 1.16986 1.17477 1.21017 0.91294 0.90770 0.93879 0.94721 0.89881 0.88046 0.93852 0.87263 0.89433 0.95286 0.94928 0.89894 0.93225 0.92630 0.92879 0.90105 0.85104 0.83828 0.84644 0.88246 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.91 71.98 0.71 -2.15 16 2 C -0.13 -3.32 6.26 30.59 0.19 -3.13 16 3 C 0.11 3.45 4.53 86.38 0.39 3.84 16 4 N -0.61 -21.78 2.20 -825.67 -1.81 -23.59 16 5 C 0.11 3.06 4.59 86.38 0.40 3.46 16 6 C -0.12 -3.43 3.06 -10.79 -0.03 -3.46 16 7 C -0.14 -3.70 8.35 71.98 0.60 -3.10 16 8 C -0.13 -2.96 9.19 71.98 0.66 -2.30 16 9 C 0.57 27.43 6.27 86.67 0.54 27.98 16 10 O -0.59 -34.05 15.80 -4.08 -0.06 -34.12 16 11 C -0.24 -11.38 4.76 -19.70 -0.09 -11.47 16 12 C -0.05 -1.78 7.61 22.50 0.17 -1.61 16 13 C -0.22 -7.46 10.03 22.41 0.22 -7.23 16 14 C -0.06 -2.42 10.01 22.26 0.22 -2.20 16 15 C -0.25 -11.50 6.94 22.72 0.16 -11.35 16 16 C 0.10 5.36 5.16 -21.11 -0.11 5.25 16 17 C -0.45 -27.45 8.49 23.41 0.20 -27.25 16 18 H 0.04 2.54 7.45 -2.91 -0.02 2.52 16 19 C 0.04 2.19 5.48 85.37 0.47 2.66 16 20 N -0.85 -50.29 13.92 21.88 0.30 -49.99 16 21 Si 0.97 45.26 24.39 68.60 1.67 46.94 16 22 H -0.25 -10.25 6.72 99.48 0.67 -9.58 16 23 H -0.25 -11.92 6.58 99.48 0.65 -11.27 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.10 2.45 6.70 -2.39 -0.02 2.44 16 31 H 0.04 1.66 7.36 -2.38 -0.02 1.64 16 32 H 0.11 2.12 8.02 -2.39 -0.02 2.10 16 33 H 0.09 2.43 4.47 -2.39 -0.01 2.42 16 34 H 0.03 1.17 7.88 -2.39 -0.02 1.15 16 35 H 0.03 1.01 6.38 -2.39 -0.02 0.99 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.13 3.99 7.25 -2.91 -0.02 3.96 16 42 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 44 H 0.10 4.59 4.39 -2.91 -0.01 4.58 16 45 H 0.29 15.52 8.29 -92.71 -0.77 14.75 16 Total: -1.00 -74.39 353.10 5.67 -68.72 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.87 Total: 24.10 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 4.71 Total: -32.06 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.51 Total: -73.58 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.06 Total: -34.12 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.67 Total: 46.94 kcal Total: -74.39 5.67 -68.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600993044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.102 kcal (2) G-P(sol) polarization free energy of solvation -74.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds