Wall clock time and date at job start Tue Mar 31 2020 06:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46951 * 2 1 4 4 C 1.52996 * 109.46925 * 120.00189 * 2 1 3 5 5 C 1.50700 * 109.47246 * 295.00360 * 4 2 1 6 6 H 1.07998 * 119.99814 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00379 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99780 * 359.97438 * 7 5 4 9 9 Si 1.86790 * 120.00337 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47211 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47466 * 119.99815 * 9 7 5 12 12 H 1.48498 * 109.47435 * 239.99857 * 9 7 5 13 13 C 1.52996 * 109.47183 * 240.00250 * 2 1 3 14 14 N 1.46899 * 109.47326 * 60.23189 * 13 2 1 15 15 C 1.46009 * 111.00151 * 177.42592 * 14 13 2 16 16 C 1.51367 * 113.62985 * 165.89063 * 15 14 13 17 17 O 1.43339 * 110.68718 * 64.99470 * 16 15 14 18 18 C 1.36012 * 115.30656 * 274.66356 * 17 16 15 19 19 C 1.38840 * 120.11796 * 249.31684 * 18 17 16 20 20 C 1.38177 * 119.71001 * 178.94365 * 19 18 17 21 21 C 1.38285 * 120.26286 * 359.88664 * 20 19 18 22 22 C 1.38403 * 120.06196 * 0.51466 * 21 20 19 23 23 C 1.37918 * 119.63710 * 0.02562 * 22 21 20 24 24 C 1.46699 * 110.99686 * 51.37962 * 14 13 2 25 25 H 1.08991 * 109.58380 * 329.44205 * 24 14 13 26 26 C 1.52997 * 109.58544 * 89.86733 * 24 14 13 27 27 H 1.08999 * 109.47690 * 305.67311 * 1 2 3 28 28 H 1.09003 * 109.46855 * 65.67529 * 1 2 3 29 29 H 1.09005 * 109.46862 * 185.66960 * 1 2 3 30 30 H 1.08998 * 109.47285 * 175.00113 * 4 2 1 31 31 H 1.09001 * 109.47192 * 54.99848 * 4 2 1 32 32 H 0.96993 * 119.99985 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47040 * 180.23299 * 13 2 1 34 34 H 1.09009 * 109.47104 * 300.23172 * 13 2 1 35 35 H 1.09002 * 108.65909 * 286.97012 * 15 14 13 36 36 H 1.09005 * 108.65385 * 44.82615 * 15 14 13 37 37 H 1.08992 * 109.23522 * 185.30310 * 16 15 14 38 38 H 1.09000 * 109.23298 * 304.68530 * 16 15 14 39 39 H 1.07999 * 120.14590 * 358.90229 * 19 18 17 40 40 H 1.07997 * 119.86737 * 179.88502 * 20 19 18 41 41 H 1.08005 * 119.96904 * 180.49707 * 21 20 19 42 42 H 1.07994 * 120.18531 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47492 * 63.52281 * 26 24 14 44 44 H 1.09002 * 109.46951 * 183.52339 * 26 24 14 45 45 H 1.08999 * 109.46917 * 303.51712 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6412 0.0569 2.4766 6 1 1.0805 0.9744 2.3757 7 6 1.9930 -0.4018 3.7283 8 7 2.6763 -1.5189 3.8512 9 14 1.4994 0.5631 5.2496 10 1 0.7429 1.7748 4.8434 11 1 0.6456 -0.2858 6.1189 12 1 2.7177 0.9679 5.9960 13 6 2.0400 -0.7212 -1.2492 14 7 1.5550 -0.0254 -2.4487 15 6 2.0727 -0.6513 -3.6620 16 6 1.3599 -0.2119 -4.9229 17 8 1.5788 1.1832 -5.1684 18 6 0.7267 2.0272 -4.5269 19 6 -0.2151 2.7478 -5.2489 20 6 -1.0911 3.5862 -4.5864 21 6 -1.0337 3.7070 -3.2100 22 6 -0.0897 2.9953 -2.4903 23 6 0.7915 2.1672 -3.1535 24 6 1.8551 1.4090 -2.3818 25 1 1.8535 1.7344 -1.3416 26 6 3.2274 1.6753 -3.0035 27 1 -0.3634 0.5993 0.8348 28 1 -0.3633 0.4233 -0.9365 29 1 -0.3633 -1.0227 0.1015 30 1 3.1263 -0.7995 1.2056 31 1 1.6053 -1.7198 1.2951 32 1 2.9235 -1.8418 4.7317 33 1 3.1300 -0.7248 -1.2471 34 1 1.6733 -1.7477 -1.2514 35 1 3.1308 -0.4066 -3.7563 36 1 1.9753 -1.7327 -3.5653 37 1 1.7364 -0.7885 -5.7677 38 1 0.2908 -0.3937 -4.8129 39 1 -0.2624 2.6540 -6.3238 40 1 -1.8235 4.1494 -5.1456 41 1 -1.7260 4.3576 -2.6962 42 1 -0.0429 3.0885 -1.4154 43 1 3.2044 1.4126 -4.0611 44 1 3.4758 2.7313 -2.8968 45 1 3.9797 1.0720 -2.4954 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602446761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:52 Heat of formation + Delta-G solvation = -6.610863 kcal Electronic energy + Delta-G solvation = -24081.345710 eV Core-core repulsion = 20871.047653 eV Total energy + Delta-G solvation = -3210.298056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84946 -38.00130 -37.26722 -34.59014 -32.40523 -32.08630 -30.59427 -28.83182 -28.62515 -26.74421 -25.18140 -24.49732 -22.94168 -22.23871 -21.41164 -20.19919 -18.62800 -17.58784 -16.85678 -16.18853 -15.87951 -15.60155 -15.18298 -14.79832 -14.45220 -14.17016 -13.93045 -13.73804 -13.25666 -13.11508 -12.56314 -12.35876 -12.29673 -11.97404 -11.88439 -11.80851 -11.58399 -11.38195 -11.19556 -10.93591 -10.85472 -10.76515 -10.68985 -10.31407 -10.20633 -9.91260 -9.48991 -9.12429 -8.94014 -8.82279 -8.46666 -8.33763 -7.96143 -5.98746 -3.99840 1.25449 1.38533 3.31231 3.39055 3.41953 3.42750 3.84945 4.24719 4.47710 4.75261 4.89267 4.99936 5.04861 5.11924 5.19526 5.31816 5.36692 5.37881 5.44538 5.54802 5.60941 5.69775 5.74729 5.78676 5.87367 5.95751 5.99239 6.06802 6.15739 6.35259 6.37649 6.40303 6.49372 6.54212 6.63628 6.69229 6.76300 6.98949 7.14013 7.18638 7.38306 7.40838 7.51296 7.67732 7.83123 8.01169 8.44967 9.06570 9.63777 11.12860 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021581 B = 0.004282 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.155977 B = 6537.455732 C = 7367.045359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.086 4.086 3 H 0.058 0.942 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.534 5.534 15 C 0.020 3.980 16 C 0.069 3.931 17 O -0.328 6.328 18 C 0.103 3.897 19 C -0.138 4.138 20 C -0.114 4.114 21 C -0.129 4.129 22 C -0.091 4.091 23 C -0.084 4.084 24 C 0.110 3.890 25 H 0.107 0.893 26 C -0.187 4.187 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.012 0.988 31 H 0.017 0.983 32 H 0.259 0.741 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.325 6.252 -18.855 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.105 4.105 3 H 0.076 0.924 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.062 4.062 14 N -0.258 5.258 15 C -0.109 4.109 16 C -0.006 4.006 17 O -0.245 6.245 18 C 0.059 3.941 19 C -0.157 4.157 20 C -0.132 4.132 21 C -0.147 4.147 22 C -0.110 4.110 23 C -0.085 4.085 24 C 0.002 3.998 25 H 0.124 0.876 26 C -0.245 4.245 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.578 6.100 -18.863 20.347 hybrid contribution 0.550 0.344 1.149 1.319 sum -4.028 6.444 -17.715 19.276 Atomic orbital electron populations 1.21602 0.95541 1.01000 0.99969 1.21373 0.96187 0.98839 0.94065 0.92371 1.19123 0.95919 0.95578 0.90339 1.21249 1.34513 1.08253 0.90943 0.92572 1.25011 0.95318 0.95081 0.99083 1.69974 1.39146 1.21253 1.23270 0.86590 0.78250 0.80150 0.83344 1.19749 1.21080 1.21126 1.22284 0.96950 0.98100 0.88836 1.61222 1.60918 1.01626 1.02020 1.22148 0.98404 0.99600 0.90716 1.22642 1.01021 0.79837 0.97066 1.86267 1.53403 1.16169 1.68663 1.18466 0.91438 0.94040 0.90154 1.21165 0.94694 0.99642 1.00151 1.20949 0.98886 0.98807 0.94536 1.21177 0.99183 1.00200 0.94130 1.21005 0.94234 0.95550 1.00214 1.20279 0.97365 0.97850 0.93026 1.21006 0.90903 0.87634 1.00265 0.87569 1.22558 0.96857 1.01870 1.03228 0.93042 0.93621 0.93945 0.96936 0.96503 0.93155 0.95288 0.90964 0.93520 0.90088 0.88293 0.91779 0.85802 0.86014 0.85947 0.85327 0.89854 0.92527 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.81 37.16 0.33 -2.04 16 2 C -0.09 -1.72 1.92 -90.62 -0.17 -1.89 16 3 H 0.06 1.17 5.75 -51.93 -0.30 0.88 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.13 8.48 -34.44 -0.29 -14.42 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.06 1.11 4.46 -3.83 -0.02 1.09 16 14 N -0.53 -7.96 3.61 -229.38 -0.83 -8.78 16 15 C 0.02 0.25 4.85 -5.13 -0.02 0.22 16 16 C 0.07 0.77 6.63 36.33 0.24 1.01 16 17 O -0.33 -4.27 7.96 -19.78 -0.16 -4.43 16 18 C 0.10 1.38 5.39 -39.37 -0.21 1.17 16 19 C -0.14 -1.61 10.01 -39.38 -0.39 -2.01 16 20 C -0.11 -1.21 10.03 -39.59 -0.40 -1.60 16 21 C -0.13 -1.46 10.05 -39.50 -0.40 -1.85 16 22 C -0.09 -1.20 9.70 -39.64 -0.38 -1.59 16 23 C -0.08 -1.18 5.03 -104.25 -0.52 -1.71 16 24 C 0.11 1.62 2.25 -68.48 -0.15 1.47 16 25 H 0.11 1.73 4.75 -51.93 -0.25 1.48 16 26 C -0.19 -2.60 7.72 37.16 0.29 -2.31 16 27 H 0.05 1.03 7.12 -51.93 -0.37 0.66 16 28 H 0.04 0.80 7.24 -51.93 -0.38 0.42 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.03 0.50 7.94 -51.93 -0.41 0.09 16 34 H 0.07 1.24 8.11 -51.92 -0.42 0.82 16 35 H 0.05 0.59 5.86 -51.93 -0.30 0.29 16 36 H 0.08 0.93 7.94 -51.93 -0.41 0.51 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.74 7.91 -51.93 -0.41 0.33 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 42 H 0.13 1.65 7.99 -52.49 -0.42 1.23 16 43 H 0.08 1.15 4.42 -51.93 -0.23 0.92 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.79 7.76 -51.93 -0.40 0.38 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -30.07 344.00 -9.62 -39.68 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.19 Total: 0.26 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -2.34 Total: -22.39 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.09 Total: -34.86 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.16 Total: -4.43 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.07 -9.62 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602446761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.071 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds