Wall clock time and date at job start Tue Mar 31 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46951 * 2 1 4 4 C 1.52996 * 109.46925 * 120.00189 * 2 1 3 5 5 C 1.50700 * 109.47246 * 295.00360 * 4 2 1 6 6 H 1.07998 * 119.99814 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00379 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99780 * 359.97438 * 7 5 4 9 9 Si 1.86790 * 120.00337 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47211 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47466 * 119.99815 * 9 7 5 12 12 H 1.48498 * 109.47435 * 239.99857 * 9 7 5 13 13 C 1.52996 * 109.47183 * 240.00250 * 2 1 3 14 14 N 1.46899 * 109.47326 * 60.23189 * 13 2 1 15 15 C 1.46009 * 111.00151 * 177.42592 * 14 13 2 16 16 C 1.51367 * 113.62985 * 165.89063 * 15 14 13 17 17 O 1.43339 * 110.68718 * 64.99470 * 16 15 14 18 18 C 1.36012 * 115.30656 * 274.66356 * 17 16 15 19 19 C 1.38840 * 120.11796 * 249.31684 * 18 17 16 20 20 C 1.38177 * 119.71001 * 178.94365 * 19 18 17 21 21 C 1.38285 * 120.26286 * 359.88664 * 20 19 18 22 22 C 1.38403 * 120.06196 * 0.51466 * 21 20 19 23 23 C 1.37918 * 119.63710 * 0.02562 * 22 21 20 24 24 C 1.46699 * 110.99686 * 51.37962 * 14 13 2 25 25 H 1.08991 * 109.58380 * 329.44205 * 24 14 13 26 26 C 1.52997 * 109.58544 * 89.86733 * 24 14 13 27 27 H 1.08999 * 109.47690 * 305.67311 * 1 2 3 28 28 H 1.09003 * 109.46855 * 65.67529 * 1 2 3 29 29 H 1.09005 * 109.46862 * 185.66960 * 1 2 3 30 30 H 1.08998 * 109.47285 * 175.00113 * 4 2 1 31 31 H 1.09001 * 109.47192 * 54.99848 * 4 2 1 32 32 H 0.96993 * 119.99985 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47040 * 180.23299 * 13 2 1 34 34 H 1.09009 * 109.47104 * 300.23172 * 13 2 1 35 35 H 1.09002 * 108.65909 * 286.97012 * 15 14 13 36 36 H 1.09005 * 108.65385 * 44.82615 * 15 14 13 37 37 H 1.08992 * 109.23522 * 185.30310 * 16 15 14 38 38 H 1.09000 * 109.23298 * 304.68530 * 16 15 14 39 39 H 1.07999 * 120.14590 * 358.90229 * 19 18 17 40 40 H 1.07997 * 119.86737 * 179.88502 * 20 19 18 41 41 H 1.08005 * 119.96904 * 180.49707 * 21 20 19 42 42 H 1.07994 * 120.18531 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47492 * 63.52281 * 26 24 14 44 44 H 1.09002 * 109.46951 * 183.52339 * 26 24 14 45 45 H 1.08999 * 109.46917 * 303.51712 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6412 0.0569 2.4766 6 1 1.0805 0.9744 2.3757 7 6 1.9930 -0.4018 3.7283 8 7 2.6763 -1.5189 3.8512 9 14 1.4994 0.5631 5.2496 10 1 0.7429 1.7748 4.8434 11 1 0.6456 -0.2858 6.1189 12 1 2.7177 0.9679 5.9960 13 6 2.0400 -0.7212 -1.2492 14 7 1.5550 -0.0254 -2.4487 15 6 2.0727 -0.6513 -3.6620 16 6 1.3599 -0.2119 -4.9229 17 8 1.5788 1.1832 -5.1684 18 6 0.7267 2.0272 -4.5269 19 6 -0.2151 2.7478 -5.2489 20 6 -1.0911 3.5862 -4.5864 21 6 -1.0337 3.7070 -3.2100 22 6 -0.0897 2.9953 -2.4903 23 6 0.7915 2.1672 -3.1535 24 6 1.8551 1.4090 -2.3818 25 1 1.8535 1.7344 -1.3416 26 6 3.2274 1.6753 -3.0035 27 1 -0.3634 0.5993 0.8348 28 1 -0.3633 0.4233 -0.9365 29 1 -0.3633 -1.0227 0.1015 30 1 3.1263 -0.7995 1.2056 31 1 1.6053 -1.7198 1.2951 32 1 2.9235 -1.8418 4.7317 33 1 3.1300 -0.7248 -1.2471 34 1 1.6733 -1.7477 -1.2514 35 1 3.1308 -0.4066 -3.7563 36 1 1.9753 -1.7327 -3.5653 37 1 1.7364 -0.7885 -5.7677 38 1 0.2908 -0.3937 -4.8129 39 1 -0.2624 2.6540 -6.3238 40 1 -1.8235 4.1494 -5.1456 41 1 -1.7260 4.3576 -2.6962 42 1 -0.0429 3.0885 -1.4154 43 1 3.2044 1.4126 -4.0611 44 1 3.4758 2.7313 -2.8968 45 1 3.9797 1.0720 -2.4954 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602446761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:51 Heat of formation + Delta-G solvation = -22.606742 kcal Electronic energy + Delta-G solvation = -24082.039343 eV Core-core repulsion = 20871.047653 eV Total energy + Delta-G solvation = -3210.991689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.86059 -39.16867 -38.26891 -36.26494 -34.18901 -33.30141 -31.55877 -30.13999 -29.63739 -28.58846 -26.68727 -25.56449 -24.59587 -23.37616 -22.35076 -21.50261 -20.04413 -18.60366 -18.55204 -17.64781 -16.98593 -16.66967 -16.49088 -16.10943 -15.86852 -15.51824 -15.12426 -14.81329 -14.46641 -14.30063 -14.07111 -14.03824 -13.42499 -13.36243 -13.21880 -12.94613 -12.84272 -12.76212 -12.66182 -12.54614 -12.39617 -12.21569 -11.95755 -11.89053 -11.75124 -11.37090 -11.11519 -10.85510 -10.68094 -10.52166 -9.75607 -9.39915 -9.15547 -8.17807 -6.26588 0.34219 0.46338 1.39224 1.40007 1.52564 2.41396 2.51902 2.81997 3.16093 3.21058 3.70152 3.85171 4.01819 4.09178 4.18317 4.24673 4.28124 4.30780 4.38945 4.43964 4.49148 4.57653 4.61591 4.64445 4.74847 4.77065 4.85409 4.90461 4.94405 5.00330 5.07836 5.13133 5.24968 5.28393 5.45833 5.47915 5.49050 5.53667 5.61514 5.69318 5.79537 5.87843 5.88788 6.09326 6.21213 6.31434 6.56556 6.89237 7.41787 8.94542 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021581 B = 0.004282 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.155977 B = 6537.455732 C = 7367.045359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.076 4.076 3 H 0.056 0.944 4 C 0.035 3.965 5 C -0.526 4.526 6 H 0.060 0.940 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.077 3.923 14 N -0.534 5.534 15 C 0.016 3.984 16 C 0.072 3.928 17 O -0.336 6.336 18 C 0.088 3.912 19 C -0.141 4.141 20 C -0.107 4.107 21 C -0.129 4.129 22 C -0.109 4.109 23 C -0.103 4.103 24 C 0.110 3.890 25 H 0.085 0.915 26 C -0.179 4.179 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.034 0.966 30 H -0.015 1.015 31 H -0.009 1.009 32 H 0.261 0.739 33 H 0.021 0.979 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.092 0.908 37 H 0.131 0.869 38 H 0.061 0.939 39 H 0.143 0.857 40 H 0.154 0.846 41 H 0.145 0.855 42 H 0.122 0.878 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.769 7.600 -20.398 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.003 4.003 5 C -0.564 4.564 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.051 4.051 14 N -0.258 5.258 15 C -0.112 4.112 16 C -0.003 4.003 17 O -0.253 6.253 18 C 0.044 3.956 19 C -0.159 4.159 20 C -0.125 4.125 21 C -0.147 4.147 22 C -0.128 4.128 23 C -0.104 4.104 24 C 0.003 3.997 25 H 0.103 0.897 26 C -0.238 4.238 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.003 0.997 31 H 0.010 0.990 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.161 0.839 40 H 0.171 0.829 41 H 0.162 0.838 42 H 0.140 0.860 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.028 7.458 -20.425 22.564 hybrid contribution 0.998 -0.068 1.577 1.867 sum -5.030 7.390 -18.848 20.861 Atomic orbital electron populations 1.21455 0.94552 1.00366 1.00343 1.21161 0.96799 0.98294 0.93148 0.92564 1.18997 0.94025 0.94716 0.92562 1.21634 1.34269 1.08486 0.92002 0.92178 1.25914 0.95257 0.96060 1.02549 1.70104 1.40371 1.22953 1.24184 0.85492 0.78060 0.78963 0.79129 1.18543 1.20533 1.20630 1.22006 0.96322 0.97847 0.88895 1.61223 1.60909 1.01735 1.01949 1.22289 0.98495 1.00193 0.90244 1.22766 1.00824 0.79418 0.97260 1.86254 1.53697 1.16834 1.68481 1.18658 0.92182 0.94719 0.90010 1.21453 0.94160 0.99154 1.01160 1.21333 0.98774 0.98040 0.94379 1.21466 0.98763 0.99804 0.94702 1.21107 0.95067 0.96371 1.00212 1.20238 0.97798 0.98790 0.93563 1.20925 0.91909 0.87568 0.99333 0.89694 1.22487 0.96231 1.01771 1.03265 0.94325 0.91756 0.94634 0.99679 0.99013 0.92972 0.96073 0.91012 0.93659 0.88949 0.85121 0.92046 0.83932 0.82859 0.83757 0.85980 0.89364 0.92382 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.23 8.81 71.98 0.63 -3.60 16 2 C -0.08 -3.10 1.92 -10.80 -0.02 -3.12 16 3 H 0.06 2.35 5.75 -2.39 -0.01 2.33 16 4 C 0.03 1.82 4.45 29.85 0.13 1.95 16 5 C -0.53 -29.70 8.48 25.60 0.22 -29.48 16 6 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 7 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 8 N -0.94 -57.23 13.29 21.45 0.28 -56.95 16 9 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 10 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.08 2.67 4.46 86.30 0.38 3.05 16 14 N -0.53 -15.76 3.61 -879.61 -3.17 -18.93 16 15 C 0.02 0.37 4.85 85.94 0.42 0.79 16 16 C 0.07 1.45 6.63 71.45 0.47 1.92 16 17 O -0.34 -8.09 7.96 -93.69 -0.75 -8.84 16 18 C 0.09 2.21 5.39 22.41 0.12 2.33 16 19 C -0.14 -2.90 10.01 22.40 0.22 -2.68 16 20 C -0.11 -1.93 10.03 22.27 0.22 -1.71 16 21 C -0.13 -2.62 10.05 22.32 0.22 -2.39 16 22 C -0.11 -2.77 9.70 22.23 0.22 -2.55 16 23 C -0.10 -2.81 5.03 -19.62 -0.10 -2.91 16 24 C 0.11 3.27 2.25 44.53 0.10 3.37 16 25 H 0.09 2.85 4.75 -2.39 -0.01 2.84 16 26 C -0.18 -4.98 7.72 71.98 0.56 -4.42 16 27 H 0.04 1.55 7.12 -2.39 -0.02 1.54 16 28 H 0.06 2.23 7.24 -2.39 -0.02 2.21 16 29 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 30 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 31 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 32 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.02 0.76 7.94 -2.39 -0.02 0.74 16 34 H 0.07 2.50 8.11 -2.38 -0.02 2.48 16 35 H 0.05 1.10 5.86 -2.39 -0.01 1.09 16 36 H 0.09 1.98 7.94 -2.38 -0.02 1.96 16 37 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.29 7.91 -2.39 -0.02 1.27 16 39 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.12 3.15 7.99 -2.91 -0.02 3.12 16 43 H 0.09 2.36 4.42 -2.39 -0.01 2.35 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.05 1.35 7.76 -2.39 -0.02 1.34 16 Total: -1.00 -65.36 344.00 3.62 -61.74 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.96 Total: 15.41 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 4.27 Total: -39.02 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -2.89 Total: -75.88 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.75 Total: -8.84 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.36 3.62 -61.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602446761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.137 kcal (2) G-P(sol) polarization free energy of solvation -65.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds