Wall clock time and date at job start Tue Mar 31 2020 06:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.47024 * 2 1 4 4 C 1.53002 * 109.46986 * 119.99893 * 2 1 3 5 5 C 1.50706 * 109.46931 * 294.99609 * 4 2 1 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99398 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 12 12 H 1.48498 * 109.47295 * 60.00420 * 9 7 5 13 13 C 1.52999 * 109.47107 * 240.00098 * 2 1 3 14 14 N 1.46890 * 109.47137 * 64.99713 * 13 2 1 15 15 C 1.46041 * 111.00171 * 66.05051 * 14 13 2 16 16 C 1.51358 * 113.61967 * 193.82875 * 15 14 13 17 17 O 1.43291 * 110.75774 * 294.79629 * 16 15 14 18 18 C 1.36110 * 115.32380 * 85.57346 * 17 16 15 19 19 C 1.38787 * 120.18545 * 111.26453 * 18 17 16 20 20 C 1.38192 * 119.66902 * 181.11221 * 19 18 17 21 21 C 1.38289 * 120.21825 * 0.07597 * 20 19 18 22 22 C 1.38396 * 120.10887 * 359.48506 * 21 20 19 23 23 C 1.37967 * 119.65588 * 359.96500 * 22 21 20 24 24 C 1.46724 * 111.00115 * 192.04223 * 14 13 2 25 25 H 1.09008 * 109.58081 * 30.82620 * 24 14 13 26 26 C 1.53000 * 109.58529 * 270.41025 * 24 14 13 27 27 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46817 * 299.99816 * 1 2 3 29 29 H 1.09001 * 109.47004 * 60.00145 * 1 2 3 30 30 H 1.09000 * 109.46986 * 175.00167 * 4 2 1 31 31 H 1.08992 * 109.46974 * 55.00231 * 4 2 1 32 32 H 0.97000 * 119.99706 * 359.97438 * 8 7 5 33 33 H 1.09003 * 109.46715 * 185.00149 * 13 2 1 34 34 H 1.09004 * 109.46576 * 304.99824 * 13 2 1 35 35 H 1.08999 * 108.65050 * 314.89584 * 15 14 13 36 36 H 1.08999 * 108.65754 * 72.75685 * 15 14 13 37 37 H 1.09004 * 109.21505 * 55.12773 * 16 15 14 38 38 H 1.09001 * 109.21542 * 174.46615 * 16 15 14 39 39 H 1.07999 * 120.16234 * 1.08659 * 19 18 17 40 40 H 1.08000 * 119.89036 * 180.09824 * 20 19 18 41 41 H 1.07997 * 119.94749 * 179.46816 * 21 20 19 42 42 H 1.07996 * 120.16876 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.47293 * 59.99921 * 26 24 14 44 44 H 1.09005 * 109.46989 * 179.97438 * 26 24 14 45 45 H 1.08998 * 109.46829 * 299.99305 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0801 0.9743 2.3757 7 6 1.9933 -0.4016 3.7283 8 7 2.6773 -1.5182 3.8511 9 14 1.4986 0.5629 5.2496 10 1 1.9948 -0.1364 6.4621 11 1 2.0898 1.9237 5.1870 12 1 0.0186 0.6684 5.3093 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4455 15 6 2.3301 1.3297 -2.4892 16 6 1.7396 2.2911 -3.4982 17 8 1.9186 1.8001 -4.8325 18 6 0.9600 0.9381 -5.2691 19 6 0.0803 1.3222 -6.2714 20 6 -0.9035 0.4469 -6.6906 21 6 -1.0128 -0.8052 -6.1138 22 6 -0.1298 -1.1916 -5.1207 23 6 0.8594 -0.3217 -4.7104 24 6 1.8670 -0.7532 -3.6626 25 1 1.7315 -1.8116 -3.4395 26 6 3.2849 -0.5138 -4.1853 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 3.1263 -0.7994 1.2056 31 1 1.6054 -1.7197 1.2952 32 1 2.9338 -2.0191 3.0611 33 1 3.1264 -0.7994 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 2.2761 1.7854 -1.5005 36 1 3.3786 1.1647 -2.7370 37 1 0.6745 2.4103 -3.2995 38 1 2.2323 3.2587 -3.4028 39 1 0.1639 2.3005 -6.7212 40 1 -1.5890 0.7416 -7.4714 41 1 -1.7887 -1.4826 -6.4388 42 1 -0.2145 -2.1691 -4.6694 43 1 4.0074 -0.8131 -3.4260 44 1 3.4432 -1.1023 -5.0890 45 1 3.4143 0.5443 -4.4130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602446763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:57 Heat of formation + Delta-G solvation = -15.206982 kcal Electronic energy + Delta-G solvation = -23805.397283 eV Core-core repulsion = 20594.726472 eV Total energy + Delta-G solvation = -3210.670812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.89754 -38.10169 -37.20638 -35.01798 -32.71551 -31.77967 -30.71559 -28.87562 -28.76400 -26.41486 -25.17254 -24.55602 -23.02745 -22.33218 -21.54015 -20.05372 -19.03953 -17.74144 -17.03153 -16.46299 -15.91953 -15.60691 -15.19508 -14.79708 -14.52130 -14.07253 -13.76288 -13.56265 -13.51657 -13.27725 -13.22742 -12.50023 -12.24054 -12.13025 -11.80395 -11.74326 -11.70792 -11.38048 -11.27433 -11.18619 -10.96099 -10.75880 -10.65148 -10.24442 -10.09346 -9.88183 -9.71626 -9.44243 -8.95124 -8.58008 -8.46314 -8.29775 -8.03569 -6.32515 -4.00700 1.14709 1.25557 3.32971 3.44919 3.46779 3.65323 3.77857 4.16364 4.56989 4.59709 4.74428 4.89087 5.01482 5.06447 5.17062 5.22310 5.29229 5.31162 5.43395 5.44729 5.47047 5.57795 5.63863 5.75811 5.82254 5.87287 5.91265 5.96575 6.04490 6.23584 6.26019 6.28025 6.37032 6.42981 6.51668 6.58192 6.65014 6.86878 7.03751 7.10695 7.27687 7.30519 7.42177 7.43995 7.59071 8.26528 8.50115 8.92437 9.70744 11.07892 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027545 B = 0.003548 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.278055 B = 7890.932417 C = 7964.536560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 H 0.058 0.942 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.049 0.951 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.065 3.935 14 N -0.533 5.533 15 C 0.015 3.985 16 C 0.069 3.931 17 O -0.330 6.330 18 C 0.107 3.893 19 C -0.136 4.136 20 C -0.111 4.111 21 C -0.130 4.130 22 C -0.094 4.094 23 C -0.089 4.089 24 C 0.123 3.877 25 H 0.085 0.915 26 C -0.188 4.188 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.003 0.997 31 H 0.006 0.994 32 H 0.268 0.732 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 4.082 -21.116 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.093 4.093 3 H 0.076 0.924 4 C -0.023 4.023 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.552 5.552 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.062 4.062 14 N -0.257 5.257 15 C -0.113 4.113 16 C -0.005 4.005 17 O -0.247 6.247 18 C 0.064 3.936 19 C -0.155 4.155 20 C -0.130 4.130 21 C -0.149 4.149 22 C -0.113 4.113 23 C -0.090 4.090 24 C 0.014 3.986 25 H 0.103 0.897 26 C -0.246 4.246 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.025 0.975 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.389 4.256 -19.500 20.436 hybrid contribution 0.614 -0.307 -1.569 1.713 sum -3.774 3.949 -21.069 21.766 Atomic orbital electron populations 1.21562 0.95499 1.00516 1.00243 1.21123 0.96138 0.98906 0.93120 0.92421 1.19249 0.95095 0.95623 0.92341 1.22019 1.38633 1.10265 0.92248 0.93245 1.25815 0.94720 0.97147 1.01364 1.70783 1.36078 1.14890 1.33474 0.83576 0.76070 0.75140 0.75697 1.20857 1.21533 1.21471 1.22335 0.97652 0.97012 0.89165 1.61208 1.59339 1.03413 1.01692 1.22256 0.97152 0.91175 1.00689 1.22669 1.01902 0.96303 0.79673 1.86283 1.45619 1.61105 1.31649 1.18472 0.90152 0.89140 0.95871 1.21182 0.94434 1.00428 0.99416 1.20975 0.98013 0.93915 1.00054 1.21151 0.99655 0.96700 0.97345 1.20930 0.94184 0.99480 0.96710 1.20250 0.97097 0.93890 0.97783 1.20750 0.91962 0.97515 0.88346 0.89706 1.22570 0.96368 1.04575 1.01075 0.94304 0.92671 0.93882 0.97910 0.97524 0.92197 0.95255 0.91232 0.88798 0.93542 0.91650 0.88039 0.85589 0.85871 0.85962 0.85705 0.92628 0.92522 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.07 -1.50 2.27 -90.62 -0.21 -1.71 16 3 H 0.06 1.19 6.09 -51.93 -0.32 0.87 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -16.71 8.41 -34.44 -0.29 -17.00 16 6 H 0.05 1.37 7.06 -52.49 -0.37 1.00 16 7 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 8 N -0.92 -28.21 13.65 55.43 0.76 -27.45 16 9 Si 1.07 25.42 29.90 -169.99 -5.08 20.34 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.07 1.11 4.28 -3.83 -0.02 1.10 16 14 N -0.53 -7.93 3.77 -229.38 -0.87 -8.80 16 15 C 0.02 0.21 4.73 -5.12 -0.02 0.19 16 16 C 0.07 0.84 6.61 36.33 0.24 1.08 16 17 O -0.33 -4.30 8.02 -20.09 -0.16 -4.46 16 18 C 0.11 1.39 5.39 -39.40 -0.21 1.18 16 19 C -0.14 -1.52 10.01 -39.40 -0.39 -1.91 16 20 C -0.11 -1.09 10.03 -39.58 -0.40 -1.49 16 21 C -0.13 -1.31 10.05 -39.50 -0.40 -1.71 16 22 C -0.09 -1.09 9.70 -39.62 -0.38 -1.47 16 23 C -0.09 -1.16 5.03 -104.28 -0.52 -1.68 16 24 C 0.12 1.65 2.69 -68.50 -0.18 1.46 16 25 H 0.08 1.11 7.33 -51.92 -0.38 0.73 16 26 C -0.19 -2.38 7.73 37.16 0.29 -2.10 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 1.16 6.95 -51.93 -0.36 0.80 16 29 H 0.04 0.77 7.75 -51.93 -0.40 0.36 16 30 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 31 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 32 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 33 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.07 1.19 7.73 -51.93 -0.40 0.79 16 35 H 0.09 1.37 5.80 -51.93 -0.30 1.07 16 36 H 0.05 0.64 5.87 -51.93 -0.30 0.33 16 37 H 0.07 0.82 7.91 -51.93 -0.41 0.41 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 1.27 7.99 -52.49 -0.42 0.85 16 43 H 0.05 0.71 8.04 -51.93 -0.42 0.30 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.16 4.30 -51.93 -0.22 0.93 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -30.94 344.45 -9.72 -40.66 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.19 Total: 0.09 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -2.37 Total: -25.57 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.11 Total: -36.25 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.16 Total: -4.46 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.94 -9.72 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602446763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.456 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds