Wall clock time and date at job start Tue Mar 31 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.47024 * 2 1 4 4 C 1.53002 * 109.46986 * 119.99893 * 2 1 3 5 5 C 1.50706 * 109.46931 * 294.99609 * 4 2 1 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99398 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 12 12 H 1.48498 * 109.47295 * 60.00420 * 9 7 5 13 13 C 1.52999 * 109.47107 * 240.00098 * 2 1 3 14 14 N 1.46890 * 109.47137 * 64.99713 * 13 2 1 15 15 C 1.46041 * 111.00171 * 66.05051 * 14 13 2 16 16 C 1.51358 * 113.61967 * 193.82875 * 15 14 13 17 17 O 1.43291 * 110.75774 * 294.79629 * 16 15 14 18 18 C 1.36110 * 115.32380 * 85.57346 * 17 16 15 19 19 C 1.38787 * 120.18545 * 111.26453 * 18 17 16 20 20 C 1.38192 * 119.66902 * 181.11221 * 19 18 17 21 21 C 1.38289 * 120.21825 * 0.07597 * 20 19 18 22 22 C 1.38396 * 120.10887 * 359.48506 * 21 20 19 23 23 C 1.37967 * 119.65588 * 359.96500 * 22 21 20 24 24 C 1.46724 * 111.00115 * 192.04223 * 14 13 2 25 25 H 1.09008 * 109.58081 * 30.82620 * 24 14 13 26 26 C 1.53000 * 109.58529 * 270.41025 * 24 14 13 27 27 H 1.09001 * 109.47239 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46817 * 299.99816 * 1 2 3 29 29 H 1.09001 * 109.47004 * 60.00145 * 1 2 3 30 30 H 1.09000 * 109.46986 * 175.00167 * 4 2 1 31 31 H 1.08992 * 109.46974 * 55.00231 * 4 2 1 32 32 H 0.97000 * 119.99706 * 359.97438 * 8 7 5 33 33 H 1.09003 * 109.46715 * 185.00149 * 13 2 1 34 34 H 1.09004 * 109.46576 * 304.99824 * 13 2 1 35 35 H 1.08999 * 108.65050 * 314.89584 * 15 14 13 36 36 H 1.08999 * 108.65754 * 72.75685 * 15 14 13 37 37 H 1.09004 * 109.21505 * 55.12773 * 16 15 14 38 38 H 1.09001 * 109.21542 * 174.46615 * 16 15 14 39 39 H 1.07999 * 120.16234 * 1.08659 * 19 18 17 40 40 H 1.08000 * 119.89036 * 180.09824 * 20 19 18 41 41 H 1.07997 * 119.94749 * 179.46816 * 21 20 19 42 42 H 1.07996 * 120.16876 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.47293 * 59.99921 * 26 24 14 44 44 H 1.09005 * 109.46989 * 179.97438 * 26 24 14 45 45 H 1.08998 * 109.46829 * 299.99305 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0801 0.9743 2.3757 7 6 1.9933 -0.4016 3.7283 8 7 2.6773 -1.5182 3.8511 9 14 1.4986 0.5629 5.2496 10 1 1.9948 -0.1364 6.4621 11 1 2.0898 1.9237 5.1870 12 1 0.0186 0.6684 5.3093 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4455 15 6 2.3301 1.3297 -2.4892 16 6 1.7396 2.2911 -3.4982 17 8 1.9186 1.8001 -4.8325 18 6 0.9600 0.9381 -5.2691 19 6 0.0803 1.3222 -6.2714 20 6 -0.9035 0.4469 -6.6906 21 6 -1.0128 -0.8052 -6.1138 22 6 -0.1298 -1.1916 -5.1207 23 6 0.8594 -0.3217 -4.7104 24 6 1.8670 -0.7532 -3.6626 25 1 1.7315 -1.8116 -3.4395 26 6 3.2849 -0.5138 -4.1853 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 3.1263 -0.7994 1.2056 31 1 1.6054 -1.7197 1.2952 32 1 2.9338 -2.0191 3.0611 33 1 3.1264 -0.7994 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 2.2761 1.7854 -1.5005 36 1 3.3786 1.1647 -2.7370 37 1 0.6745 2.4103 -3.2995 38 1 2.2323 3.2587 -3.4028 39 1 0.1639 2.3005 -6.7212 40 1 -1.5890 0.7416 -7.4714 41 1 -1.7887 -1.4826 -6.4388 42 1 -0.2145 -2.1691 -4.6694 43 1 4.0074 -0.8131 -3.4260 44 1 3.4432 -1.1023 -5.0890 45 1 3.4143 0.5443 -4.4130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602446763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:56 Heat of formation + Delta-G solvation = -31.965428 kcal Electronic energy + Delta-G solvation = -23806.123984 eV Core-core repulsion = 20594.726472 eV Total energy + Delta-G solvation = -3211.397513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.86679 -39.22918 -38.20770 -36.68175 -34.48209 -33.02851 -31.62319 -30.11912 -29.68690 -28.35571 -26.67776 -25.57035 -24.71636 -23.46509 -22.53289 -21.20250 -20.54763 -18.96876 -18.63861 -17.70713 -16.93745 -16.65591 -16.16746 -16.04718 -15.74535 -15.60657 -15.30241 -15.06990 -14.76944 -14.33646 -14.31112 -13.75606 -13.68350 -13.40506 -13.17295 -13.06914 -12.95622 -12.78598 -12.62758 -12.45359 -12.36011 -12.20548 -11.95954 -11.80240 -11.77999 -11.41150 -11.29126 -10.84254 -10.57423 -10.51866 -9.79655 -9.44181 -9.23485 -8.65187 -6.34337 0.29821 0.41827 1.52401 1.60823 1.79645 2.46305 2.57532 2.73891 3.16725 3.18921 3.62568 3.78888 3.91384 4.00315 4.09989 4.14681 4.24267 4.30263 4.31892 4.34274 4.38002 4.53211 4.55786 4.57685 4.67493 4.70963 4.74077 4.81331 4.85182 4.91413 4.97780 5.05846 5.08828 5.21630 5.31065 5.34750 5.44904 5.45337 5.57289 5.62172 5.62721 5.84809 5.99174 6.08681 6.13094 6.22853 6.51565 6.62245 7.46580 8.75476 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027545 B = 0.003548 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.278055 B = 7890.932417 C = 7964.536560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.065 4.065 3 H 0.056 0.944 4 C 0.018 3.982 5 C -0.604 4.604 6 H 0.052 0.948 7 C -0.042 4.042 8 N -0.942 5.942 9 Si 1.115 2.885 10 H -0.286 1.286 11 H -0.269 1.269 12 H -0.269 1.269 13 C 0.078 3.922 14 N -0.533 5.533 15 C 0.015 3.985 16 C 0.074 3.926 17 O -0.336 6.336 18 C 0.086 3.914 19 C -0.143 4.143 20 C -0.107 4.107 21 C -0.129 4.129 22 C -0.106 4.106 23 C -0.108 4.108 24 C 0.122 3.878 25 H 0.084 0.916 26 C -0.180 4.180 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.063 0.937 30 H -0.019 1.019 31 H -0.014 1.014 32 H 0.254 0.746 33 H 0.021 0.979 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.126 0.874 39 H 0.140 0.860 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.133 0.867 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.681 5.302 -22.660 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.083 4.083 3 H 0.075 0.925 4 C -0.020 4.020 5 C -0.642 4.642 6 H 0.071 0.929 7 C -0.239 4.239 8 N -0.580 5.580 9 Si 0.936 3.064 10 H -0.211 1.211 11 H -0.194 1.194 12 H -0.194 1.194 13 C -0.049 4.049 14 N -0.257 5.257 15 C -0.113 4.113 16 C -0.001 4.001 17 O -0.253 6.253 18 C 0.042 3.958 19 C -0.161 4.161 20 C -0.125 4.125 21 C -0.147 4.147 22 C -0.125 4.125 23 C -0.109 4.109 24 C 0.014 3.986 25 H 0.102 0.898 26 C -0.238 4.238 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.000 1.000 31 H 0.004 0.996 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.144 0.856 39 H 0.158 0.842 40 H 0.171 0.829 41 H 0.166 0.834 42 H 0.150 0.850 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.904 5.482 -21.084 22.571 hybrid contribution 1.062 -0.713 -1.188 1.746 sum -4.842 4.769 -22.272 23.286 Atomic orbital electron populations 1.21433 0.94611 1.00292 1.00291 1.20939 0.96677 0.98399 0.92327 0.92540 1.19173 0.93636 0.94894 0.94269 1.22419 1.37990 1.10398 0.93348 0.92935 1.27378 0.94061 0.97262 1.05172 1.70920 1.38076 1.16229 1.32806 0.82967 0.76953 0.74582 0.71885 1.21125 1.19409 1.19427 1.22032 0.96932 0.96813 0.89131 1.61187 1.59399 1.03736 1.01383 1.22306 0.97291 0.90906 1.00818 1.22691 1.01723 0.96612 0.79027 1.86277 1.46108 1.61185 1.31705 1.18724 0.90940 0.89228 0.96867 1.21439 0.94322 1.01435 0.98929 1.21361 0.97676 0.93391 1.00086 1.21496 0.99572 0.97261 0.96399 1.21153 0.94202 0.99757 0.97347 1.20253 0.97777 0.94612 0.98279 1.20779 0.92723 0.97244 0.87850 0.89773 1.22487 0.95848 1.04369 1.01127 0.94638 0.94427 0.91818 1.00045 0.99554 0.93690 0.96067 0.91312 0.89865 0.93670 0.92105 0.85591 0.84231 0.82913 0.83391 0.84958 0.93345 0.91685 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.23 8.89 71.98 0.64 -3.59 16 2 C -0.06 -2.65 2.27 -10.79 -0.02 -2.67 16 3 H 0.06 2.33 6.09 -2.38 -0.01 2.32 16 4 C 0.02 0.93 3.76 29.85 0.11 1.04 16 5 C -0.60 -34.44 8.41 25.60 0.22 -34.22 16 6 H 0.05 2.91 7.06 -2.91 -0.02 2.89 16 7 C -0.04 -2.46 5.46 84.66 0.46 -2.00 16 8 N -0.94 -59.36 13.65 21.45 0.29 -59.07 16 9 Si 1.11 50.76 29.90 68.60 2.05 52.81 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 C 0.08 2.71 4.28 86.30 0.37 3.08 16 14 N -0.53 -15.67 3.77 -879.63 -3.32 -18.99 16 15 C 0.01 0.40 4.73 85.93 0.41 0.80 16 16 C 0.07 1.69 6.61 71.45 0.47 2.16 16 17 O -0.34 -8.32 8.02 -94.80 -0.76 -9.08 16 18 C 0.09 2.09 5.39 22.39 0.12 2.21 16 19 C -0.14 -2.85 10.01 22.39 0.22 -2.63 16 20 C -0.11 -1.76 10.03 22.27 0.22 -1.53 16 21 C -0.13 -2.22 10.05 22.32 0.22 -2.00 16 22 C -0.11 -2.26 9.70 22.24 0.22 -2.04 16 23 C -0.11 -2.68 5.03 -19.64 -0.10 -2.78 16 24 C 0.12 3.21 2.69 44.50 0.12 3.33 16 25 H 0.08 2.19 7.33 -2.38 -0.02 2.17 16 26 C -0.18 -4.51 7.73 71.98 0.56 -3.95 16 27 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.56 6.95 -2.38 -0.02 1.55 16 29 H 0.06 2.20 7.75 -2.39 -0.02 2.18 16 30 H -0.02 -1.05 8.01 -2.39 -0.02 -1.07 16 31 H -0.01 -0.77 8.01 -2.39 -0.02 -0.79 16 32 H 0.25 16.20 7.22 -92.71 -0.67 15.53 16 33 H 0.02 0.76 8.08 -2.39 -0.02 0.74 16 34 H 0.07 2.38 7.73 -2.38 -0.02 2.36 16 35 H 0.08 2.41 5.80 -2.39 -0.01 2.40 16 36 H 0.05 1.23 5.87 -2.39 -0.01 1.22 16 37 H 0.06 1.44 7.91 -2.38 -0.02 1.42 16 38 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 40 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 41 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.13 2.50 7.99 -2.91 -0.02 2.48 16 43 H 0.05 1.25 8.04 -2.39 -0.02 1.23 16 44 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.08 2.16 4.30 -2.39 -0.01 2.15 16 Total: -1.00 -66.97 344.45 3.57 -63.40 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 1.06 Total: 15.69 kcal Atomic # 6 Polarization: -49.01 SS G_CDS: 4.24 Total: -44.77 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -3.02 Total: -78.05 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.76 Total: -9.08 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.05 Total: 52.81 kcal Total: -66.97 3.57 -63.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602446763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.437 kcal (2) G-P(sol) polarization free energy of solvation -66.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds