Wall clock time and date at job start Tue Mar 31 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46707 * 2 1 4 4 N 1.46502 * 109.46602 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00442 * 275.20841 * 4 3 2 6 6 H 1.08007 * 119.99492 * 323.54067 * 5 4 3 7 7 C 1.38947 * 120.00377 * 143.54271 * 5 4 3 8 8 N 1.31412 * 119.99875 * 339.91376 * 7 5 4 9 9 Si 1.86798 * 119.99910 * 159.91047 * 7 5 4 10 10 H 1.48502 * 109.47081 * 60.00352 * 9 7 5 11 11 H 1.48505 * 109.46766 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47452 * 299.99722 * 9 7 5 13 13 C 1.34780 * 119.99711 * 95.21534 * 4 3 2 14 14 O 1.21293 * 119.99901 * 174.25589 * 13 4 3 15 15 C 1.50701 * 119.99983 * 354.52708 * 13 4 3 16 16 H 1.09006 * 109.46552 * 324.96001 * 15 13 4 17 17 C 1.52995 * 109.47271 * 84.96510 * 15 13 4 18 18 C 1.52999 * 109.47162 * 60.07230 * 17 15 13 19 19 C 1.53003 * 109.46912 * 204.96801 * 15 13 4 20 20 C 1.50704 * 109.47061 * 173.70065 * 19 15 13 21 21 C 1.38232 * 119.99824 * 275.97188 * 20 19 15 22 22 C 1.38243 * 119.99703 * 179.76662 * 21 20 19 23 23 C 1.38235 * 119.99725 * 0.50659 * 22 21 20 24 24 C 1.38235 * 120.00338 * 359.74197 * 23 22 21 25 25 C 1.38233 * 119.99973 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47439 * 60.00195 * 1 2 3 27 27 H 1.09004 * 109.46693 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47409 * 299.99714 * 1 2 3 29 29 H 1.08997 * 109.47126 * 239.99894 * 2 1 3 30 30 H 1.09003 * 109.47027 * 119.99368 * 2 1 3 31 31 H 1.09001 * 109.46953 * 60.00006 * 3 2 1 32 32 H 1.08994 * 109.47011 * 300.00067 * 3 2 1 33 33 H 0.96996 * 120.00240 * 185.05126 * 8 7 5 34 34 H 1.09002 * 109.46860 * 180.02562 * 17 15 13 35 35 H 1.09000 * 109.47047 * 300.07233 * 17 15 13 36 36 H 1.09005 * 109.46890 * 185.96811 * 18 17 15 37 37 H 1.08995 * 109.47016 * 305.97231 * 18 17 15 38 38 H 1.08998 * 109.46438 * 65.97310 * 18 17 15 39 39 H 1.09002 * 109.46988 * 293.69573 * 19 15 13 40 40 H 1.08993 * 109.47277 * 53.69963 * 19 15 13 41 41 H 1.07994 * 120.00311 * 359.97438 * 21 20 19 42 42 H 1.07997 * 120.00078 * 180.22933 * 22 21 20 43 43 H 1.08005 * 120.00018 * 179.72556 * 23 22 21 44 44 H 1.07999 * 120.00153 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.00509 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1900 1.3350 1.1832 6 1 3.8082 1.8121 2.0738 7 6 5.3755 0.6122 1.2362 8 7 5.6448 -0.2773 0.3071 9 14 6.5866 0.9051 2.6280 10 1 5.9289 0.6110 3.9265 11 1 7.7625 0.0145 2.4564 12 1 7.0309 2.3219 2.6077 13 6 4.1793 1.5485 -1.1615 14 8 5.3877 1.6534 -1.1542 15 6 3.4314 1.5427 -2.4699 16 1 2.5727 0.8756 -2.3945 17 6 2.9502 2.9596 -2.7885 18 6 4.1558 3.8956 -2.8961 19 6 4.3588 1.0561 -3.5852 20 6 3.5721 0.9025 -4.8615 21 6 2.8619 -0.2592 -5.1000 22 6 2.1364 -0.3981 -6.2685 23 6 2.1296 0.6205 -7.2030 24 6 2.8440 1.7801 -6.9668 25 6 3.5656 1.9210 -5.7962 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 6.4359 -0.8334 0.3828 34 1 2.4089 2.9553 -3.7346 35 1 2.2906 3.3068 -1.9933 36 1 3.8092 4.9219 -3.0175 37 1 4.7566 3.8197 -1.9899 38 1 4.7602 3.6118 -3.7576 39 1 5.1578 1.7821 -3.7361 40 1 4.7895 0.0946 -3.3060 41 1 2.8712 -1.0569 -4.3721 42 1 1.5785 -1.3042 -6.4533 43 1 1.5664 0.5102 -8.1180 44 1 2.8390 2.5757 -7.6971 45 1 4.1241 2.8268 -5.6117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609568890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:50 Heat of formation + Delta-G solvation = -35.793127 kcal Electronic energy + Delta-G solvation = -24201.253018 eV Core-core repulsion = 20989.689524 eV Total energy + Delta-G solvation = -3211.563494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.99678 -39.82662 -36.91494 -36.21325 -34.31564 -32.88607 -32.52330 -31.68726 -29.52950 -27.58394 -26.53476 -25.43611 -23.42382 -23.23465 -22.32536 -21.72300 -20.11854 -18.43724 -17.57446 -17.25364 -16.78361 -16.46680 -16.09121 -15.94200 -15.60653 -15.25784 -15.15518 -14.75162 -14.25419 -14.00756 -13.90012 -13.75097 -13.51751 -13.31427 -13.09822 -12.85421 -12.79746 -12.71326 -12.64047 -12.56406 -12.20915 -12.05081 -11.98776 -11.87228 -11.72773 -11.60931 -11.48574 -11.31843 -10.81139 -9.84956 -9.72401 -9.49766 -8.98610 -8.16354 -5.85278 0.52472 0.57368 1.36181 1.44967 1.48056 2.32263 2.61408 2.94334 3.25709 3.31672 3.88026 3.92068 4.06847 4.16023 4.17224 4.22334 4.24611 4.34921 4.37259 4.50000 4.55111 4.60559 4.67717 4.72789 4.77087 4.80617 4.82864 4.86940 5.04353 5.11200 5.15788 5.18344 5.19484 5.25844 5.29489 5.36560 5.37287 5.48388 5.51819 5.60786 5.67146 5.69243 5.86308 6.20675 6.21792 7.09303 7.32739 7.81361 8.51989 8.93414 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.005277 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.422002 B = 5304.860485 C = 5889.652387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.103 3.897 4 N -0.475 5.475 5 C -0.361 4.361 6 H 0.078 0.922 7 C 0.019 3.981 8 N -0.863 5.863 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.474 3.526 14 O -0.582 6.582 15 C -0.082 4.082 16 H 0.077 0.923 17 C -0.102 4.102 18 C -0.148 4.148 19 C -0.050 4.050 20 C -0.080 4.080 21 C -0.135 4.135 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.124 4.124 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.255 0.745 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.026 0.974 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.037 0.963 41 H 0.109 0.891 42 H 0.140 0.860 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.912 3.062 -12.622 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C -0.020 4.020 4 N -0.197 5.197 5 C -0.489 4.489 6 H 0.096 0.904 7 C -0.187 4.187 8 N -0.499 5.499 9 Si 0.793 3.207 10 H -0.183 1.183 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.263 3.737 14 O -0.463 6.463 15 C -0.104 4.104 16 H 0.096 0.904 17 C -0.139 4.139 18 C -0.205 4.205 19 C -0.088 4.088 20 C -0.080 4.080 21 C -0.154 4.154 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.142 4.142 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.127 0.873 42 H 0.158 0.842 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.147 3.031 -12.682 17.155 hybrid contribution 1.231 -0.466 1.224 1.797 sum -9.916 2.565 -11.459 15.369 Atomic orbital electron populations 1.21661 0.92989 1.02216 1.02578 1.21762 0.97110 0.97256 1.00417 1.21787 0.81615 0.96717 1.01888 1.43622 1.04586 1.65962 1.05494 1.19256 1.07048 1.33344 0.89225 0.90425 1.25855 1.00072 0.93923 0.98836 1.69963 1.26060 1.18718 1.35183 0.85416 0.78425 0.77583 0.79306 1.18324 1.21645 1.20858 1.20421 0.87618 0.80184 0.85437 1.90449 1.16520 1.52121 1.87227 1.21132 0.97944 0.99235 0.92081 0.90444 1.21446 0.98022 0.92031 1.02410 1.21788 0.98019 0.99538 1.01153 1.20209 0.96721 1.00407 0.91473 1.19856 0.97807 0.95078 0.95282 1.21168 0.98401 0.97327 0.98464 1.21373 0.98841 1.00099 0.93487 1.21468 0.99700 0.93459 0.99977 1.21441 0.96655 0.98664 0.96897 1.21226 1.00311 0.98461 0.94232 0.91409 0.92166 0.91908 0.94272 0.94355 0.91691 0.89899 0.93544 0.89332 0.91554 0.90905 0.95503 0.92391 0.91572 0.94463 0.87298 0.84239 0.83423 0.83587 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.91 71.98 0.71 -2.79 16 2 C -0.13 -4.63 6.11 30.60 0.19 -4.44 16 3 C 0.10 4.03 4.98 86.38 0.43 4.46 16 4 N -0.48 -24.17 2.57 -635.52 -1.63 -25.80 16 5 C -0.36 -20.46 9.31 84.04 0.78 -19.67 16 6 H 0.08 4.22 7.91 -2.91 -0.02 4.20 16 7 C 0.02 1.13 4.34 84.93 0.37 1.50 16 8 N -0.86 -53.65 11.32 21.66 0.25 -53.40 16 9 Si 0.97 47.05 29.60 68.60 2.03 49.08 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 12 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 13 C 0.47 24.35 4.96 87.66 0.43 24.78 16 14 O -0.58 -35.35 12.83 -3.07 -0.04 -35.39 16 15 C -0.08 -3.22 1.63 -11.54 -0.02 -3.24 16 16 H 0.08 2.94 6.21 -2.38 -0.01 2.93 16 17 C -0.10 -3.22 5.14 30.59 0.16 -3.06 16 18 C -0.15 -4.88 9.22 71.98 0.66 -4.22 16 19 C -0.05 -1.94 4.06 29.85 0.12 -1.82 16 20 C -0.08 -2.45 4.56 -19.86 -0.09 -2.54 16 21 C -0.14 -3.84 9.73 22.27 0.22 -3.63 16 22 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 23 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 24 C -0.12 -2.39 10.05 22.27 0.22 -2.16 16 25 C -0.12 -3.15 8.48 22.27 0.19 -2.96 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.54 7.36 -2.39 -0.02 1.52 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 2.40 8.08 -2.39 -0.02 2.38 16 32 H 0.08 2.78 4.83 -2.39 -0.01 2.76 16 33 H 0.26 15.46 8.32 -92.71 -0.77 14.69 16 34 H 0.09 2.36 6.61 -2.39 -0.02 2.35 16 35 H 0.07 2.03 6.55 -2.39 -0.02 2.01 16 36 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.03 1.11 6.48 -2.39 -0.02 1.09 16 38 H 0.06 1.82 5.53 -2.39 -0.01 1.80 16 39 H 0.07 2.68 6.07 -2.39 -0.01 2.66 16 40 H 0.04 1.68 8.12 -2.39 -0.02 1.66 16 41 H 0.11 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 45 H 0.13 2.99 6.97 -2.91 -0.02 2.97 16 Total: -1.00 -73.45 352.17 6.39 -67.06 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.96 Total: 22.89 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 4.82 Total: -24.44 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -1.39 Total: -79.20 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.04 Total: -35.39 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -73.45 6.39 -67.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609568890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.267 kcal (2) G-P(sol) polarization free energy of solvation -73.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds