Wall clock time and date at job start Tue Mar 31 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47253 * 2 1 4 4 N 1.46495 * 109.46881 * 180.02562 * 3 2 1 5 5 C 1.37100 * 120.00509 * 264.04167 * 4 3 2 6 6 H 1.07999 * 120.00502 * 142.13113 * 5 4 3 7 7 C 1.38950 * 119.99496 * 322.14043 * 5 4 3 8 8 N 1.31412 * 119.99811 * 157.91264 * 7 5 4 9 9 Si 1.86796 * 120.00331 * 337.90560 * 7 5 4 10 10 H 1.48505 * 109.47028 * 92.05738 * 9 7 5 11 11 H 1.48497 * 109.47613 * 212.05468 * 9 7 5 12 12 H 1.48505 * 109.47115 * 332.05931 * 9 7 5 13 13 C 1.34781 * 120.00051 * 84.05000 * 4 3 2 14 14 O 1.21292 * 119.99903 * 4.85041 * 13 4 3 15 15 C 1.50703 * 120.00062 * 184.85777 * 13 4 3 16 16 H 1.08996 * 109.47273 * 25.10607 * 15 13 4 17 17 C 1.52995 * 109.47031 * 265.10429 * 15 13 4 18 18 C 1.52999 * 109.47221 * 65.56939 * 17 15 13 19 19 C 1.52999 * 109.46974 * 145.10218 * 15 13 4 20 20 C 1.50705 * 109.47249 * 184.99631 * 19 15 13 21 21 C 1.38235 * 119.99783 * 89.99812 * 20 19 15 22 22 C 1.38236 * 119.99787 * 179.97438 * 21 20 19 23 23 C 1.38230 * 119.99954 * 359.97438 * 22 21 20 24 24 C 1.38236 * 120.00180 * 0.27780 * 23 22 21 25 25 C 1.38231 * 119.99860 * 359.51311 * 24 23 22 26 26 H 1.08998 * 109.47023 * 59.99953 * 1 2 3 27 27 H 1.08998 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46649 * 299.99403 * 1 2 3 29 29 H 1.09006 * 109.47045 * 240.00293 * 2 1 3 30 30 H 1.08997 * 109.47675 * 120.00423 * 2 1 3 31 31 H 1.08997 * 109.46374 * 60.00534 * 3 2 1 32 32 H 1.08990 * 109.47132 * 300.00349 * 3 2 1 33 33 H 0.97008 * 119.99997 * 185.01126 * 8 7 5 34 34 H 1.08998 * 109.47347 * 185.57356 * 17 15 13 35 35 H 1.09005 * 109.46900 * 305.57094 * 17 15 13 36 36 H 1.09000 * 109.47310 * 307.55897 * 18 17 15 37 37 H 1.09000 * 109.46924 * 67.56237 * 18 17 15 38 38 H 1.09001 * 109.47173 * 187.56322 * 18 17 15 39 39 H 1.09008 * 109.47149 * 65.00048 * 19 15 13 40 40 H 1.08995 * 109.47737 * 304.99932 * 19 15 13 41 41 H 1.08002 * 120.00059 * 359.97438 * 21 20 19 42 42 H 1.08000 * 119.99530 * 180.02562 * 22 21 20 43 43 H 1.07999 * 119.99464 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.99590 * 179.72189 * 24 23 22 45 45 H 1.08001 * 119.99973 * 180.27637 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1911 1.5655 1.1800 6 1 5.1006 1.0046 1.3370 7 6 3.7162 2.4117 2.1745 8 7 4.0816 2.2279 3.4233 9 14 2.5584 3.8106 1.7363 10 1 1.1529 3.3486 1.8649 11 1 2.7903 4.9521 2.6574 12 1 2.8114 4.2431 0.3384 13 6 4.1784 1.3216 -1.1619 14 8 3.5748 1.3014 -2.2137 15 6 5.6814 1.2113 -1.1534 16 1 6.0107 0.8077 -0.1959 17 6 6.2956 2.5971 -1.3611 18 6 5.9606 3.4882 -0.1634 19 6 6.1307 0.2800 -2.2810 20 6 7.6210 0.0722 -2.1972 21 6 8.1325 -0.9693 -1.4457 22 6 9.4995 -1.1601 -1.3692 23 6 10.3549 -0.3099 -2.0446 24 6 9.8436 0.7347 -2.7918 25 6 8.4765 0.9230 -2.8718 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.6944 2.7718 4.1271 34 1 7.3776 2.5047 -1.4540 35 1 5.8896 3.0419 -2.2697 36 1 4.8848 3.4728 0.0114 37 1 6.4778 3.1170 0.7214 38 1 6.2806 4.5095 -0.3696 39 1 5.8798 0.7268 -3.2431 40 1 5.6240 -0.6801 -2.1831 41 1 7.4641 -1.6338 -0.9184 42 1 9.8990 -1.9741 -0.7825 43 1 11.4229 -0.4589 -1.9845 44 1 10.5123 1.4016 -3.3159 45 1 8.0769 1.7364 -3.4593 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609568891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:53 Heat of formation + Delta-G solvation = -23.107468 kcal Electronic energy + Delta-G solvation = -23993.978650 eV Core-core repulsion = 20782.965247 eV Total energy + Delta-G solvation = -3211.013403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.66124 -38.74013 -35.60944 -34.65495 -32.95713 -31.75093 -31.38279 -30.70780 -28.36136 -26.16850 -25.02172 -23.58776 -22.54951 -21.66901 -21.10067 -20.31883 -18.72207 -16.84367 -16.64723 -16.19668 -15.36632 -15.00276 -14.84869 -14.53422 -14.15351 -14.00070 -13.38499 -13.22972 -13.12087 -13.04711 -12.67398 -12.60735 -12.24438 -12.13091 -11.94824 -11.63936 -11.47583 -11.28142 -11.00669 -10.97314 -10.78256 -10.69770 -10.53756 -10.42371 -10.17417 -10.01521 -9.80416 -9.70324 -9.11825 -8.74477 -8.54648 -8.36627 -7.76469 -6.45182 -4.04289 1.54258 1.57057 3.02263 3.19935 3.26971 3.72864 3.95451 4.09658 4.39522 4.91239 5.03161 5.07654 5.16900 5.29395 5.43646 5.57409 5.60451 5.66403 5.69255 5.76110 5.77240 5.89073 6.01565 6.05048 6.11043 6.23287 6.25885 6.28596 6.33993 6.37536 6.40741 6.43212 6.58288 6.61245 6.64247 6.66148 6.72975 6.76331 6.89286 6.91791 6.98615 7.19238 7.29250 7.40190 8.09071 8.25413 8.96458 9.36685 9.70489 10.63203 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.005201 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.330808 B = 5381.780666 C = 5942.263003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.100 3.900 4 N -0.465 5.465 5 C -0.338 4.338 6 H 0.105 0.895 7 C 0.071 3.929 8 N -0.861 5.861 9 Si 0.867 3.133 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.259 1.259 13 C 0.489 3.511 14 O -0.599 6.599 15 C -0.086 4.086 16 H 0.097 0.903 17 C -0.102 4.102 18 C -0.153 4.153 19 C -0.066 4.066 20 C -0.066 4.066 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.133 4.133 24 C -0.122 4.122 25 C -0.115 4.115 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.275 0.725 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.969 -3.072 -7.097 9.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.023 4.023 4 N -0.184 5.184 5 C -0.465 4.465 6 H 0.123 0.877 7 C -0.136 4.136 8 N -0.496 5.496 9 Si 0.695 3.305 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.183 1.183 13 C 0.279 3.721 14 O -0.484 6.484 15 C -0.107 4.107 16 H 0.115 0.885 17 C -0.140 4.140 18 C -0.210 4.210 19 C -0.104 4.104 20 C -0.066 4.066 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.151 4.151 24 C -0.140 4.140 25 C -0.133 4.133 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.701 -2.969 -7.383 9.789 hybrid contribution -0.589 0.782 0.231 1.006 sum 5.113 -2.187 -7.152 9.059 Atomic orbital electron populations 1.21704 0.96410 1.01024 1.01361 1.21762 0.94796 0.98016 1.02348 1.21667 0.82808 0.96653 1.01146 1.43803 1.03778 1.64538 1.06318 1.18933 1.11278 1.25509 0.90792 0.87723 1.25283 0.96689 0.96820 0.94836 1.69692 1.42002 1.38773 0.99168 0.87170 0.80721 0.82978 0.79672 1.20163 1.21470 1.18341 1.20378 0.89226 0.79297 0.83240 1.90523 1.70534 1.55911 1.31459 1.21090 0.93132 0.96669 0.99778 0.88512 1.21419 0.99728 0.93993 0.98874 1.21960 1.04343 0.96984 0.97750 1.20493 0.90008 1.00096 0.99805 1.20000 0.95988 0.94601 0.95980 1.21116 0.95273 0.98120 0.98878 1.21102 0.93564 0.99520 0.99582 1.21057 0.99327 0.96086 0.98599 1.21090 0.95269 0.98062 0.99610 1.21089 0.93152 0.99159 0.99948 0.93070 0.93054 0.93011 0.92120 0.91355 0.91278 0.91878 0.91495 0.91855 0.92715 0.90474 0.92052 0.94806 0.90398 0.91213 0.86058 0.86413 0.86637 0.86496 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 37.16 0.37 -1.96 16 2 C -0.13 -2.52 6.21 -26.73 -0.17 -2.68 16 3 C 0.10 2.21 3.98 -4.04 -0.02 2.19 16 4 N -0.46 -10.84 1.91 -114.82 -0.22 -11.06 16 5 C -0.34 -8.35 6.60 -14.93 -0.10 -8.44 16 6 H 0.11 2.72 6.44 -52.49 -0.34 2.39 16 7 C 0.07 1.80 5.14 -17.47 -0.09 1.71 16 8 N -0.86 -23.05 13.95 55.50 0.77 -22.27 16 9 Si 0.87 20.18 23.84 -169.99 -4.05 16.13 16 10 H -0.27 -6.18 6.53 56.52 0.37 -5.81 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.26 -6.14 6.82 56.52 0.39 -5.75 16 13 C 0.49 11.06 5.90 -10.98 -0.06 11.00 16 14 O -0.60 -14.67 16.02 5.55 0.09 -14.59 16 15 C -0.09 -1.65 1.83 -91.77 -0.17 -1.82 16 16 H 0.10 1.97 6.09 -51.93 -0.32 1.65 16 17 C -0.10 -1.85 5.12 -26.73 -0.14 -1.99 16 18 C -0.15 -3.03 8.70 37.16 0.32 -2.71 16 19 C -0.07 -1.11 4.42 -27.88 -0.12 -1.24 16 20 C -0.07 -0.98 4.72 -104.62 -0.49 -1.47 16 21 C -0.12 -1.64 9.70 -39.58 -0.38 -2.02 16 22 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 23 C -0.13 -1.57 10.05 -39.58 -0.40 -1.96 16 24 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 25 C -0.12 -1.57 7.87 -39.58 -0.31 -1.88 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.07 1.56 3.52 -51.93 -0.18 1.38 16 32 H 0.06 1.40 7.54 -51.93 -0.39 1.01 16 33 H 0.27 6.95 8.32 -40.82 -0.34 6.61 16 34 H 0.06 1.03 5.88 -51.93 -0.31 0.72 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.74 3.62 -51.93 -0.19 1.55 16 37 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.33 7.96 -51.92 -0.41 0.91 16 40 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 41 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 45 H 0.12 1.53 7.98 -52.49 -0.42 1.11 16 LS Contribution 349.15 15.07 5.26 5.26 Total: -1.00 -27.77 349.15 -7.93 -35.70 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.23 Total: 7.89 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -2.55 Total: -17.05 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.56 Total: -33.33 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.09 Total: -14.59 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.05 Total: 16.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.77 -7.93 -35.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609568891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.588 kcal (2) G-P(sol) polarization free energy of solvation -27.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds