Wall clock time and date at job start Tue Mar 31 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47253 * 2 1 4 4 N 1.46495 * 109.46881 * 180.02562 * 3 2 1 5 5 C 1.37100 * 120.00509 * 264.04167 * 4 3 2 6 6 H 1.07999 * 120.00502 * 142.13113 * 5 4 3 7 7 C 1.38950 * 119.99496 * 322.14043 * 5 4 3 8 8 N 1.31412 * 119.99811 * 157.91264 * 7 5 4 9 9 Si 1.86796 * 120.00331 * 337.90560 * 7 5 4 10 10 H 1.48505 * 109.47028 * 92.05738 * 9 7 5 11 11 H 1.48497 * 109.47613 * 212.05468 * 9 7 5 12 12 H 1.48505 * 109.47115 * 332.05931 * 9 7 5 13 13 C 1.34781 * 120.00051 * 84.05000 * 4 3 2 14 14 O 1.21292 * 119.99903 * 4.85041 * 13 4 3 15 15 C 1.50703 * 120.00062 * 184.85777 * 13 4 3 16 16 H 1.08996 * 109.47273 * 25.10607 * 15 13 4 17 17 C 1.52995 * 109.47031 * 265.10429 * 15 13 4 18 18 C 1.52999 * 109.47221 * 65.56939 * 17 15 13 19 19 C 1.52999 * 109.46974 * 145.10218 * 15 13 4 20 20 C 1.50705 * 109.47249 * 184.99631 * 19 15 13 21 21 C 1.38235 * 119.99783 * 89.99812 * 20 19 15 22 22 C 1.38236 * 119.99787 * 179.97438 * 21 20 19 23 23 C 1.38230 * 119.99954 * 359.97438 * 22 21 20 24 24 C 1.38236 * 120.00180 * 0.27780 * 23 22 21 25 25 C 1.38231 * 119.99860 * 359.51311 * 24 23 22 26 26 H 1.08998 * 109.47023 * 59.99953 * 1 2 3 27 27 H 1.08998 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46649 * 299.99403 * 1 2 3 29 29 H 1.09006 * 109.47045 * 240.00293 * 2 1 3 30 30 H 1.08997 * 109.47675 * 120.00423 * 2 1 3 31 31 H 1.08997 * 109.46374 * 60.00534 * 3 2 1 32 32 H 1.08990 * 109.47132 * 300.00349 * 3 2 1 33 33 H 0.97008 * 119.99997 * 185.01126 * 8 7 5 34 34 H 1.08998 * 109.47347 * 185.57356 * 17 15 13 35 35 H 1.09005 * 109.46900 * 305.57094 * 17 15 13 36 36 H 1.09000 * 109.47310 * 307.55897 * 18 17 15 37 37 H 1.09000 * 109.46924 * 67.56237 * 18 17 15 38 38 H 1.09001 * 109.47173 * 187.56322 * 18 17 15 39 39 H 1.09008 * 109.47149 * 65.00048 * 19 15 13 40 40 H 1.08995 * 109.47737 * 304.99932 * 19 15 13 41 41 H 1.08002 * 120.00059 * 359.97438 * 21 20 19 42 42 H 1.08000 * 119.99530 * 180.02562 * 22 21 20 43 43 H 1.07999 * 119.99464 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.99590 * 179.72189 * 24 23 22 45 45 H 1.08001 * 119.99973 * 180.27637 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1911 1.5655 1.1800 6 1 5.1006 1.0046 1.3370 7 6 3.7162 2.4117 2.1745 8 7 4.0816 2.2279 3.4233 9 14 2.5584 3.8106 1.7363 10 1 1.1529 3.3486 1.8649 11 1 2.7903 4.9521 2.6574 12 1 2.8114 4.2431 0.3384 13 6 4.1784 1.3216 -1.1619 14 8 3.5748 1.3014 -2.2137 15 6 5.6814 1.2113 -1.1534 16 1 6.0107 0.8077 -0.1959 17 6 6.2956 2.5971 -1.3611 18 6 5.9606 3.4882 -0.1634 19 6 6.1307 0.2800 -2.2810 20 6 7.6210 0.0722 -2.1972 21 6 8.1325 -0.9693 -1.4457 22 6 9.4995 -1.1601 -1.3692 23 6 10.3549 -0.3099 -2.0446 24 6 9.8436 0.7347 -2.7918 25 6 8.4765 0.9230 -2.8718 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.6944 2.7718 4.1271 34 1 7.3776 2.5047 -1.4540 35 1 5.8896 3.0419 -2.2697 36 1 4.8848 3.4728 0.0114 37 1 6.4778 3.1170 0.7214 38 1 6.2806 4.5095 -0.3696 39 1 5.8798 0.7268 -3.2431 40 1 5.6240 -0.6801 -2.1831 41 1 7.4641 -1.6338 -0.9184 42 1 9.8990 -1.9741 -0.7825 43 1 11.4229 -0.4589 -1.9845 44 1 10.5123 1.4016 -3.3159 45 1 8.0769 1.7364 -3.4593 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609568891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:53 Heat of formation + Delta-G solvation = -35.859933 kcal Electronic energy + Delta-G solvation = -23994.531638 eV Core-core repulsion = 20782.965247 eV Total energy + Delta-G solvation = -3211.566391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24976 -39.99763 -37.30905 -36.29243 -34.62404 -33.47345 -32.79865 -31.69896 -29.73683 -27.75677 -26.85449 -25.05085 -23.71018 -23.06497 -22.47485 -21.70276 -20.56035 -18.52268 -18.29876 -17.50968 -17.07409 -16.41002 -16.10614 -15.91627 -15.85429 -15.49556 -14.92002 -14.73071 -14.57967 -14.39391 -14.20750 -13.89136 -13.72139 -13.51259 -13.41248 -13.31873 -13.20238 -12.79434 -12.54991 -12.48127 -12.26683 -12.01666 -11.87830 -11.82538 -11.72073 -11.70035 -11.50965 -11.37638 -10.99098 -10.33265 -9.72398 -9.67602 -9.50385 -8.44676 -6.04251 0.51703 0.57743 1.14820 1.29331 1.38393 1.91192 2.16288 2.59885 2.95872 3.02428 3.80851 3.91907 3.98469 4.10084 4.13354 4.22938 4.24137 4.27174 4.37429 4.38816 4.49841 4.54011 4.58386 4.69270 4.72676 4.74881 4.78829 4.86928 4.92766 5.06867 5.08523 5.11015 5.15187 5.21995 5.25785 5.26571 5.31534 5.38560 5.52891 5.64647 5.66246 5.69140 5.83177 6.11088 6.20566 6.30397 7.00391 7.45558 7.81839 8.67118 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.005201 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.330808 B = 5381.780666 C = 5942.263003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.094 3.906 4 N -0.474 5.474 5 C -0.323 4.323 6 H 0.085 0.915 7 C 0.042 3.958 8 N -0.896 5.896 9 Si 0.906 3.094 10 H -0.261 1.261 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.485 3.515 14 O -0.619 6.619 15 C -0.080 4.080 16 H 0.082 0.918 17 C -0.094 4.094 18 C -0.151 4.151 19 C -0.055 4.055 20 C -0.084 4.084 21 C -0.133 4.133 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.125 4.125 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.278 0.722 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.117 0.883 42 H 0.138 0.862 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -2.941 -8.038 11.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.029 4.029 4 N -0.194 5.194 5 C -0.450 4.450 6 H 0.103 0.897 7 C -0.162 4.162 8 N -0.533 5.533 9 Si 0.733 3.267 10 H -0.187 1.187 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.276 3.724 14 O -0.505 6.505 15 C -0.101 4.101 16 H 0.100 0.900 17 C -0.132 4.132 18 C -0.208 4.208 19 C -0.093 4.093 20 C -0.084 4.084 21 C -0.151 4.151 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.143 4.143 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.135 0.865 42 H 0.156 0.844 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.687 -2.844 -8.325 11.051 hybrid contribution -0.819 0.695 0.476 1.175 sum 5.868 -2.149 -7.849 10.033 Atomic orbital electron populations 1.21675 0.93398 1.02857 1.01967 1.21688 0.97418 0.95803 1.01341 1.21789 0.82149 0.98404 1.00567 1.43940 1.04489 1.64815 1.06140 1.18716 1.10599 1.24694 0.91023 0.89702 1.25633 0.97995 0.98001 0.94616 1.69745 1.43681 1.39969 0.99904 0.86531 0.80301 0.81106 0.78794 1.18690 1.21277 1.19224 1.20967 0.90637 0.78189 0.82655 1.90497 1.71344 1.56691 1.31969 1.21064 0.90776 0.98120 1.00169 0.89968 1.21380 1.01036 0.92675 0.98066 1.21899 1.02235 0.98694 0.98005 1.20327 0.91790 0.98804 0.98346 1.19860 0.94707 0.96044 0.97812 1.21234 0.96382 0.98246 0.99278 1.21395 0.92867 1.00287 0.99700 1.21464 1.00811 0.95206 0.97311 1.21440 0.94913 0.98403 0.99278 1.21244 0.93915 0.99164 0.99943 0.92240 0.90667 0.92614 0.92961 0.92435 0.91835 0.92240 0.91200 0.89528 0.92519 0.93303 0.93291 0.92612 0.90797 0.92166 0.86496 0.84370 0.83703 0.83776 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.91 71.98 0.71 -3.51 16 2 C -0.12 -4.74 6.21 30.60 0.19 -4.55 16 3 C 0.09 4.13 3.98 86.38 0.34 4.47 16 4 N -0.47 -22.49 1.91 -635.55 -1.21 -23.70 16 5 C -0.32 -16.30 6.60 84.04 0.55 -15.75 16 6 H 0.09 4.59 6.44 -2.91 -0.02 4.58 16 7 C 0.04 2.15 5.14 84.93 0.44 2.59 16 8 N -0.90 -48.63 13.95 21.66 0.30 -48.32 16 9 Si 0.91 41.52 23.84 68.60 1.64 43.16 16 10 H -0.26 -11.28 6.53 99.48 0.65 -10.63 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.55 6.82 99.48 0.68 -11.87 16 13 C 0.48 22.29 5.90 87.66 0.52 22.80 16 14 O -0.62 -30.59 16.02 -3.07 -0.05 -30.64 16 15 C -0.08 -3.14 1.83 -11.54 -0.02 -3.16 16 16 H 0.08 3.45 6.09 -2.39 -0.01 3.44 16 17 C -0.09 -3.34 5.12 30.59 0.16 -3.18 16 18 C -0.15 -5.94 8.70 71.98 0.63 -5.32 16 19 C -0.05 -1.86 4.42 29.85 0.13 -1.73 16 20 C -0.08 -2.46 4.72 -19.86 -0.09 -2.56 16 21 C -0.13 -3.70 9.70 22.27 0.22 -3.48 16 22 C -0.12 -2.87 10.05 22.27 0.22 -2.64 16 23 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 24 C -0.12 -2.60 10.05 22.27 0.22 -2.37 16 25 C -0.12 -3.16 7.87 22.27 0.18 -2.99 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.06 2.85 3.52 -2.39 -0.01 2.85 16 32 H 0.06 2.64 7.54 -2.39 -0.02 2.62 16 33 H 0.28 14.21 8.32 -92.70 -0.77 13.44 16 34 H 0.09 2.69 5.88 -2.39 -0.01 2.68 16 35 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.05 2.20 3.62 -2.39 -0.01 2.19 16 37 H 0.05 2.01 8.06 -2.39 -0.02 1.99 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 2.53 7.96 -2.38 -0.02 2.51 16 40 H 0.06 2.10 8.09 -2.39 -0.02 2.08 16 41 H 0.12 3.21 8.06 -2.91 -0.02 3.19 16 42 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 43 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 45 H 0.13 2.98 7.98 -2.91 -0.02 2.96 16 Total: -1.00 -59.61 349.15 6.17 -53.45 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.87 Total: 29.87 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 4.62 Total: -23.81 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -0.91 Total: -72.02 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.05 Total: -30.64 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.64 Total: 43.16 kcal Total: -59.61 6.17 -53.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609568891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.587 kcal (2) G-P(sol) polarization free energy of solvation -59.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds