Wall clock time and date at job start Tue Mar 31 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34773 * 119.99879 * 84.99781 * 13 3 2 15 15 O 1.21550 * 120.00557 * 359.97438 * 14 13 3 16 16 C 1.47855 * 119.99622 * 179.97438 * 14 13 3 17 17 C 1.39573 * 120.14385 * 359.72367 * 16 14 13 18 18 C 1.37955 * 119.84976 * 179.74689 * 17 16 14 19 19 C 1.38365 * 120.14541 * 0.52952 * 18 17 16 20 20 C 1.50699 * 119.85300 * 179.72319 * 19 18 17 21 21 C 1.53004 * 109.47196 * 270.02241 * 20 19 18 22 22 C 1.53002 * 109.47124 * 64.99800 * 21 20 19 23 23 C 1.52999 * 109.47315 * 185.00296 * 21 20 19 24 24 C 1.38358 * 120.29044 * 359.74288 * 19 18 17 25 25 C 1.37956 * 120.14544 * 359.97438 * 24 19 18 26 26 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 27 27 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 28 28 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 30 30 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 31 31 H 0.97003 * 119.99675 * 354.92508 * 8 7 5 32 32 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 33 33 H 1.07996 * 120.07301 * 359.97438 * 17 16 14 34 34 H 1.08004 * 119.93099 * 180.27687 * 18 17 16 35 35 H 1.09007 * 109.47239 * 30.01829 * 20 19 18 36 36 H 1.08995 * 109.47371 * 150.02216 * 20 19 18 37 37 H 1.09005 * 109.46806 * 305.00129 * 21 20 19 38 38 H 1.09005 * 109.47010 * 60.00454 * 22 21 20 39 39 H 1.08998 * 109.46913 * 180.02562 * 22 21 20 40 40 H 1.08997 * 109.47068 * 300.00227 * 22 21 20 41 41 H 1.08993 * 109.47211 * 59.99748 * 23 21 20 42 42 H 1.09001 * 109.46684 * 179.97438 * 23 21 20 43 43 H 1.09000 * 109.46638 * 299.99913 * 23 21 20 44 44 H 1.08000 * 119.92523 * 179.97438 * 24 19 18 45 45 H 1.08000 * 120.07018 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6598 -1.3861 15 8 -0.3370 2.6304 -0.4588 16 6 0.0693 3.3172 -2.6551 17 6 0.9709 3.3577 -3.7199 18 6 0.6091 3.9680 -4.9030 19 6 -0.6402 4.5487 -5.0317 20 6 -1.0263 5.2191 -6.3250 21 6 -0.6262 6.6950 -6.2737 22 6 0.8978 6.8080 -6.1983 23 6 -1.1286 7.4037 -7.5331 24 6 -1.5364 4.5169 -3.9781 25 6 -1.1893 3.9047 -2.7915 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8787 0.5738 0.4634 32 1 2.2909 2.1165 -1.9977 33 1 1.9480 2.9091 -3.6190 34 1 1.3040 3.9962 -5.7293 35 1 -0.5127 4.7321 -7.1541 36 1 -2.1039 5.1395 -6.4680 37 1 -1.0691 7.1610 -5.3934 38 1 1.3406 6.3419 -7.0785 39 1 1.1827 7.8594 -6.1612 40 1 1.2556 6.3031 -5.3010 41 1 -2.2142 7.3232 -7.5868 42 1 -0.8439 8.4552 -7.4962 43 1 -0.6857 6.9376 -8.4133 44 1 -2.5099 4.9723 -4.0848 45 1 -1.8897 3.8809 -1.9697 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613038725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:32 Heat of formation + Delta-G solvation = -43.538475 kcal Electronic energy + Delta-G solvation = -22843.764639 eV Core-core repulsion = 19631.865281 eV Total energy + Delta-G solvation = -3211.899358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.03069 -38.62571 -36.28205 -35.20216 -32.63393 -31.96314 -31.08952 -30.72634 -27.60255 -27.38349 -26.52918 -22.87906 -22.67520 -22.15011 -20.53476 -20.17988 -19.46619 -18.17965 -16.95585 -15.90303 -15.75124 -15.13858 -14.91351 -14.66855 -14.41914 -14.27447 -13.74210 -13.50372 -13.29598 -13.00441 -12.70854 -12.54180 -12.48126 -12.40806 -12.16246 -12.04937 -11.79363 -11.64606 -11.15964 -11.02274 -10.95302 -10.85910 -10.78462 -10.69727 -10.45496 -9.87314 -9.70420 -9.24931 -9.09630 -8.96075 -8.67314 -8.31851 -8.05080 -6.59203 -4.21613 0.97690 1.39469 3.22511 3.41782 3.45951 3.61582 3.97253 4.09753 4.44336 4.49023 4.56043 4.69109 4.83754 4.95386 5.00672 5.13209 5.19774 5.32380 5.35716 5.37604 5.42999 5.54731 5.57073 5.63430 5.73886 5.78546 5.94512 6.00971 6.04662 6.08179 6.09143 6.11211 6.28093 6.35562 6.47265 6.52319 6.72365 6.80844 6.91395 6.97525 7.06770 7.37884 7.41890 7.67369 8.24069 8.48281 8.70309 8.97922 9.45383 10.79530 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027151 B = 0.003392 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.007171 B = 8253.541698 C = 8790.325659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.248 3.752 4 H 0.045 0.955 5 C -0.622 4.622 6 H 0.062 0.938 7 C 0.045 3.955 8 N -0.894 5.894 9 Si 1.034 2.966 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.284 1.284 13 N -0.695 5.695 14 C 0.542 3.458 15 O -0.548 6.548 16 C -0.127 4.127 17 C -0.086 4.086 18 C -0.125 4.125 19 C -0.065 4.065 20 C -0.078 4.078 21 C -0.092 4.092 22 C -0.153 4.153 23 C -0.147 4.147 24 C -0.129 4.129 25 C -0.062 4.062 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.270 0.730 32 H 0.391 0.609 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.124 0.876 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.108 9.425 -16.729 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.144 3.856 4 H 0.062 0.938 5 C -0.660 4.660 6 H 0.080 0.920 7 C -0.163 4.163 8 N -0.526 5.526 9 Si 0.861 3.139 10 H -0.210 1.210 11 H -0.193 1.193 12 H -0.210 1.210 13 N -0.343 5.343 14 C 0.328 3.672 15 O -0.428 6.428 16 C -0.130 4.130 17 C -0.105 4.105 18 C -0.143 4.143 19 C -0.066 4.066 20 C -0.115 4.115 21 C -0.110 4.110 22 C -0.210 4.210 23 C -0.205 4.205 24 C -0.147 4.147 25 C -0.081 4.081 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.225 0.775 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.142 0.858 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.496 9.027 -14.422 21.110 hybrid contribution 0.393 0.329 -2.037 2.101 sum -12.104 9.356 -16.459 22.471 Atomic orbital electron populations 1.21894 0.97358 0.98851 1.02055 1.22201 0.93783 0.99650 1.01104 1.19140 0.95801 0.88572 0.82064 0.93758 1.22043 0.89688 1.49468 1.04789 0.92034 1.25641 0.96848 0.91948 1.01823 1.70835 1.10522 1.40187 1.31042 0.84186 0.76453 0.77418 0.75886 1.20966 1.19266 1.20974 1.46233 1.14366 1.55536 1.18173 1.18253 0.82818 0.79154 0.86998 1.90720 1.50999 1.60312 1.40778 1.20265 0.95709 1.02033 0.94989 1.21385 0.98971 0.97507 0.92638 1.20947 0.96261 0.99313 0.97735 1.19994 0.94011 0.96898 0.95650 1.20725 1.01537 0.94826 0.94425 1.21088 0.96639 0.94593 0.98700 1.21941 0.95084 1.01665 1.02290 1.21851 1.00894 1.00268 0.97439 1.20969 0.99698 1.01012 0.92998 1.21263 0.95284 0.94161 0.97395 0.92898 0.93275 0.95107 0.93189 0.92114 0.91962 0.77485 0.85531 0.85793 0.90891 0.90928 0.91013 0.92745 0.92859 0.91891 0.92724 0.92635 0.92666 0.85833 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.53 37.16 0.32 -2.68 16 2 C -0.13 -2.91 5.03 -26.73 -0.13 -3.04 16 3 C 0.25 5.97 1.78 -69.08 -0.12 5.85 16 4 H 0.04 1.17 5.99 -51.93 -0.31 0.85 16 5 C -0.62 -16.82 8.97 -34.44 -0.31 -17.13 16 6 H 0.06 1.73 7.96 -52.49 -0.42 1.32 16 7 C 0.04 1.25 5.25 -17.82 -0.09 1.16 16 8 N -0.89 -26.52 13.70 55.43 0.76 -25.76 16 9 Si 1.03 25.10 26.33 -169.99 -4.48 20.63 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.20 5.88 56.52 0.33 -5.87 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.70 -14.39 4.98 -55.87 -0.28 -14.66 16 14 C 0.54 10.78 6.37 -12.33 -0.08 10.70 16 15 O -0.55 -12.40 13.48 5.32 0.07 -12.32 16 16 C -0.13 -2.03 5.87 -104.97 -0.62 -2.64 16 17 C -0.09 -1.16 9.54 -39.19 -0.37 -1.54 16 18 C -0.12 -1.39 7.93 -39.64 -0.31 -1.71 16 19 C -0.07 -0.68 4.72 -104.53 -0.49 -1.18 16 20 C -0.08 -0.62 4.83 -27.88 -0.13 -0.75 16 21 C -0.09 -0.70 2.91 -90.62 -0.26 -0.96 16 22 C -0.15 -1.23 8.75 37.16 0.33 -0.90 16 23 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 24 C -0.13 -1.47 9.68 -39.64 -0.38 -1.85 16 25 C -0.06 -0.88 9.60 -39.19 -0.38 -1.26 16 26 H 0.05 1.15 7.88 -51.93 -0.41 0.74 16 27 H 0.05 1.02 5.63 -51.93 -0.29 0.73 16 28 H 0.03 0.56 8.14 -51.94 -0.42 0.13 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.41 5.64 -51.93 -0.29 1.12 16 31 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 32 H 0.39 7.24 6.56 -40.82 -0.27 6.98 16 33 H 0.13 1.59 6.41 -52.49 -0.34 1.26 16 34 H 0.12 1.13 8.03 -52.48 -0.42 0.71 16 35 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.07 0.51 8.08 -51.93 -0.42 0.10 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.59 6.26 -51.93 -0.33 0.27 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.13 1.93 7.65 -52.49 -0.40 1.53 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -30.68 353.65 -8.65 -39.33 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.34 Total: 5.97 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -2.71 Total: -18.51 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.48 Total: -40.43 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.07 Total: -12.32 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -4.48 Total: 20.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.68 -8.65 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.210 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds